Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
APOBEC3A	200315	genome.wustl.edu	37	22	39357438	39357438	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	39357438	39357438	G	A	SNP	APOBEC3A	NM_145699	human	genbank	57_37b	+1	validated	missense	c.221	p.R74H	0.001	HMMPfam_APOBEC_N,superfamily_Cytidine_deaminase-like,PatternScan_CYT_DCMP_DEAMINASES	HMMPfam_APOBEC_N,superfamily_Cytidine_deaminase-like,PatternScan_CYT_DCMP_DEAMINASES,HMMPfam_APOBEC_C	-	no_errors
C1orf101	257044	genome.wustl.edu	37	1	244735733	244735733	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	244735733	244735733	A	T	SNP	C1orf101	NM_001130957	human	genbank	57_37b	+1	validated	missense	c.1609	p.T537S	0.000	NULL	NULL	-	no_errors
C7orf31	136895	genome.wustl.edu	37	7	25176162	25176162	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	25176162	25176162	T	C	SNP	C7orf31	NM_138811	human	genbank	57_37b	-1	validated	missense	c.1202	p.E401G	0.392	NULL	NULL	-	no_errors
CA6	765	genome.wustl.edu	37	1	9034421	9034421	+	Missense_Mutation	SNP	G	A	A	rs3765964	byCluster;byFrequency;by1000genomes	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	9034421	9034421	G	A	SNP	CA6	ENST00000377436	human	ensembl	57_37b	+1	known	missense	c.860	p.G287E	0.000	NULL	superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1	-	
CENPE	1062	genome.wustl.edu	37	4	104062041	104062041	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	104062041	104062041	C	A	SNP	CENPE	NM_001813	human	genbank	57_37b	-1	validated	missense	c.5684	p.R1895I	0.002	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,PatternScan_AA_TRNA_LIGASE_I	-	no_errors
CLEC19A	0	genome.wustl.edu	37	16	19310092	19310092	+	Silent	SNP	T	C	C	rs1548450	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	19310092	19310092	T	C	SNP	CLEC19A	ENST00000399195	human	ensembl	57_37b	+1	known	silent	c.186	p.A62	0.000	superfamily_C-type_lectin_fold,HMMSmart_CLECT,HMMPfam_Lectin_C	superfamily_C-type_lectin_fold,HMMSmart_CLECT,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	
CSGALNACT1	55790	genome.wustl.edu	37	8	19263003	19263003	+	RNA	SNP	G	G	A	rs3802330	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	19263003	19263003	G	A	SNP	CSGALNACT1	NR_024040	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.005	-	-	-	
DCAF12L2	340578	genome.wustl.edu	37	X	125298649	125298649	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	125298649	125298649	T	A	SNP	DCAF12L2	NM_001013628	human	genbank	57_37b	-1	provisional	missense	c.1259	p.Y420F	1.000	NULL	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors
DLG1	1739	genome.wustl.edu	37	3	196867092	196867092	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	196867092	196867092	T	G	SNP	DLG1	NM_004087	human	genbank	57_37b	-1	validated	missense	c.731	p.N244T	1.000	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	HMMPfam_L27_1,superfamily_L27 domain,HMMSmart_SM00569,HMMPfam_MAGUK_N_PEST,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_PDZ_assoc,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C	-	no_errors
DNAH9	1770	genome.wustl.edu	37	17	11865565	11865565	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	11865565	11865565	G	A	SNP	DNAH9	NM_001372	human	genbank	57_37b	+1	reviewed	missense	c.13225	p.D4409N	1.000	HMMPfam_Dynein_heavy	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2	-	no_errors
DOCK6	57572	genome.wustl.edu	37	19	11325233	11325234	+	Frame_Shift_Ins	INS	-	-	CCAT	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11325233	11325234	-	CCAT	INS	DOCK6	NM_020812	human	genbank	57_37b	-1	validated	frame_shift_ins	c.4199_4198	p.V1400fs	1.000:1.000	NULL	HMMPfam_Ded_cyto	-	no_errors
ENSG00000207502	0	genome.wustl.edu	37	1	116164626	116164626	+	RNA	SNP	C	T	T	rs4411131	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	116164626	116164626	C	T	SNP	ENSG00000207502	ENST00000384771	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.021	-	-	-	
ENSG00000229508	0	genome.wustl.edu	37	7	57128882	57128882	+	Splice_Site	SNP	C	C	G	rs74953039	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	57128882	57128882	C	G	SNP	ENSG00000229508	ENST00000418422	human	ensembl	57_37b	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	
ENSG00000247256	0	genome.wustl.edu	37	13	28016521	28016521	+	RNA	SNP	G	G	A	rs7988222	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	28016521	28016521	G	A	SNP	ENSG00000247256	ENST00000500313	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
FAM122B	159090	genome.wustl.edu	37	X	133923290	133923290	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	133923290	133923290	C	T	SNP	FAM122B	NM_145284	human	genbank	57_37b	-1	validated	missense	c.184	p.G62S	1.000	NULL	NULL	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8111433	8111434	CA	-	DEL	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	(deletion:intron[8106102,8111435])	no_errors
GFM2	84340	genome.wustl.edu	37	5	74026192	74026192	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	74026192	74026192	A	G	SNP	GFM2	NM_032380	human	genbank	57_37b	-1	reviewed	missense	c.1619	p.I540T	1.000	superfamily_EF-G C-terminal domain-like	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,superfamily_EF-G C-terminal domain-like,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_EFG_IV,HMMPfam_EFG_C	-	no_errors
LARS2	23395	genome.wustl.edu	37	3	45583431	45583431	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	45583431	45583431	G	T	SNP	LARS2	NM_015340	human	genbank	57_37b	+1	reviewed	missense	c.2515	p.V839F	0.921	HMMPfam_Anticodon_1	superfamily_SSF52374,HMMPfam_tRNA-synt_1g,PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS_IleRS_edit,HMMPfam_tRNA-synt_1,superfamily_tRNAsyn_1a_bind,HMMPfam_Anticodon_1	-	no_errors
LPP	4026	genome.wustl.edu	37	3	188592262	188592262	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	188592262	188592262	C	G	SNP	LPP	NM_005578	human	genbank	57_37b	+1	validated	missense	c.1834	p.L612V	1.000	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
MED12	9968	genome.wustl.edu	37	X	70340968	70340968	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70340968	70340968	A	T	SNP	MED12	NM_005120	human	genbank	57_37b	+1	reviewed	missense	c.701	p.D234V	1.000	NULL	HMMPfam_Med12	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9063372	9063372	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9063372	9063372	T	C	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.24074	p.N8025S	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
NCL	4691	genome.wustl.edu	37	2	232326283	232326283	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	232326283	232326283	T	C	SNP	NCL	NM_005381	human	genbank	57_37b	-1	reviewed	missense	c.581	p.D194G	0.098	HMMPfam_FYDLN_acid	HMMPfam_FYDLN_acid,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
NOL6	65083	genome.wustl.edu	37	9	33464042	33464042	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	33464042	33464042	G	A	SNP	NOL6	NM_022917	human	genbank	57_37b	-1	reviewed	missense	c.2897	p.S966L	0.834	HMMPfam_Nrap	HMMPfam_Nrap	-	no_errors
PBXIP1	57326	genome.wustl.edu	37	1	154919991	154919991	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154919991	154919991	G	C	SNP	PBXIP1	NM_020524	human	genbank	57_37b	-1	provisional	missense	c.772	p.P258A	0.000	NULL	NULL	-	no_errors
PCDHA7	56141	genome.wustl.edu	37	5	140215913	140215913	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140215913	140215913	G	T	SNP	PCDHA7	NM_018910	human	genbank	57_37b	+1	reviewed	missense	c.1945	p.V649L	0.847	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
POLR1D	51082	genome.wustl.edu	37	13	28197146	28197146	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	28197146	28197146	C	T	SNP	POLR1D	NM_015972	human	genbank	57_37b	+1	provisional	missense	c.161	p.S54F	1.000	superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,PatternScan_RNA_POL_L_13KD	superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,PatternScan_RNA_POL_L_13KD	-	no_errors
PSMB6	5694	genome.wustl.edu	37	17	4701319	4701319	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4701319	4701319	A	G	SNP	PSMB6	NM_002798	human	genbank	57_37b	+1	reviewed	missense	c.448	p.M150V	1.000	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome,PatternScan_PROTEASOME_B	-	no_errors
SCN7A	6332	genome.wustl.edu	37	2	167328839	167328839	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	167328839	167328839	A	C	SNP	SCN7A	NM_002976	human	genbank	57_37b	-1	validated	missense	c.560	p.V187G	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc	-	no_errors
SLC9A6	10479	genome.wustl.edu	37	X	135126695	135126695	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135126695	135126695	A	T	SNP	SLC9A6	NM_001042537	human	genbank	57_37b	+1	validated	missense	c.1918	p.N640Y	1.000	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
SLITRK2	84631	genome.wustl.edu	37	X	144905128	144905129	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	144905128	144905129	-	T	INS	SLITRK2	NM_001144003	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1185_1186	p.L395fs	0.927:0.740	superfamily_L domain-like	HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRNT	-	no_errors
STXBP5	134957	genome.wustl.edu	37	6	147684477	147684477	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	147684477	147684477	T	A	SNP	STXBP5	NM_001127715	human	genbank	57_37b	+1	reviewed	missense	c.2552	p.I851K	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1,HMMPfam_WD40,HMMPfam_LLGL	-	no_errors
WDR72	256764	genome.wustl.edu	37	15	53907944	53907944	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	53907944	53907944	T	C	SNP	WDR72	NM_182758	human	genbank	57_37b	-1	validated	missense	c.2459	p.N820S	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
ZDHHC19	131540	genome.wustl.edu	37	3	195925458	195925458	+	Silent	SNP	A	C	C	rs1106480	byCluster;byFrequency;by1000genomes	TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195925458	195925458	A	C	SNP	ZDHHC19	ENST00000397544	human	ensembl	57_37b	-1	known	silent	c.777	p.A259	0.000	PatternScan_C_TYPE_LECTIN_1	HMMPfam_zf-DHHC,PatternScan_C_TYPE_LECTIN_1	-	
