Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACVR1B	91	genome.wustl.edu	37	12	52387803	52387803	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52387803	52387803	G	A	SNP	ACVR1B	NM_004302	human	genbank	57_37b	+1	reviewed	missense	c.1427	p.C476Y	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_Snake toxin-like,HMMPfam_Activin_recp,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
AHNAK2	113146	genome.wustl.edu	37	14	105420635	105420635	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105420635	105420635	G	A	SNP	AHNAK2	NM_138420	human	genbank	57_37b	-1	validated	nonsense	c.1153	p.R385*	0.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_Involucrin	-	no_errors
ANK1	286	genome.wustl.edu	37	8	41552742	41552742	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41552742	41552742	C	T	SNP	ANK1	NM_001142446	human	genbank	57_37b	-1	reviewed	missense	c.3191	p.R1064H	1.000	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,HMMSmart_ZU5,HMMSmart_DEATH,superfamily_DEATH_like,HMMPfam_Death	-	no_errors
ANKRD26	22852	genome.wustl.edu	37	10	27326874	27326874	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	27326874	27326874	C	T	SNP	ANKRD26	NM_014915	human	genbank	57_37b	-1	validated	missense	c.2485	p.V829M	0.000	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
APOL1	8542	genome.wustl.edu	37	22	36661744	36661744	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	36661744	36661744	C	T	SNP	APOL1	NM_145343	human	genbank	57_37b	+1	reviewed	nonsense	c.910	p.R304*	0.000	HMMPfam_ApoL	HMMPfam_ApoL	-	no_errors
BRWD3	254065	genome.wustl.edu	37	X	79932420	79932420	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	79932420	79932420	T	A	SNP	BRWD3	NM_153252	human	genbank	57_37b	-1	validated	missense	c.5097	p.R1699S	1.000	NULL	HMMSmart_SM00320,HMMPfam_WD40,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	-	no_errors
C1orf222	339457	genome.wustl.edu	37	1	1886756	1886757	+	Frame_Shift_Ins	INS	-	-	CTGGTGCGCGT	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1886756	1886757	-	CTGGTGCGCGT	INS	C1orf222	ENST00000434971	human	ensembl	57_37b	-1	known	frame_shift_ins	c.2383_2382	p.R794fs	0.000:0.001	NULL	NULL	-	no_errors
C1orf55	163859	genome.wustl.edu	37	1	226173176	226173176	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	226173176	226173176	C	G	SNP	C1orf55	NM_152608	human	genbank	57_37b	-1	validated	missense	c.1183	p.E395Q	0.977	NULL	NULL	-	no_errors
C3orf71	646450	genome.wustl.edu	37	3	48956169	48956169	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48956169	48956169	C	G	SNP	C3orf71	NM_001123040	human	genbank	57_37b	-1	predicted	missense	c.414	p.L138F	0.000	NULL	NULL	-	no_errors
CACNA1D	776	genome.wustl.edu	37	3	53842707	53842707	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	53842707	53842707	C	T	SNP	CACNA1D	NM_000720	human	genbank	57_37b	+1	validated	silent	c.5841	p.C1947	1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
CCDC61	729440	genome.wustl.edu	37	19	46498353	46498353	+	Silent	SNP	C	C	G	rs892217	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46498353	46498353	C	G	SNP	CCDC61	NM_001080402	human	genbank	57_37b	+1	provisional	silent	c.15	p.T5	0.000	NULL	NULL	-	
CDH22	64405	genome.wustl.edu	37	20	44815292	44815292	+	Missense_Mutation	SNP	C	C	T	rs117065621	by1000genomes	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	44815292	44815292	C	T	SNP	CDH22	NM_021248	human	genbank	57_37b	-1	reviewed	missense	c.1598	p.R533H	0.999	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	
CHPF	79586	genome.wustl.edu	37	2	220404537	220404537	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220404537	220404537	G	A	SNP	CHPF	NM_024536	human	genbank	57_37b	-1	validated	silent	c.1896	p.A632	1.000	HMMPfam_CHGN	HMMPfam_CHGN	-	no_errors
CNTN5	53942	genome.wustl.edu	37	11	99690286	99690286	+	Missense_Mutation	SNP	T	T	G	rs10790978	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	99690286	99690286	T	G	SNP	CNTN5	NM_014361	human	genbank	57_37b	+1	reviewed	missense	c.67	p.S23A	0.999	NULL	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_V-set,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	
CROCCL1	84809	genome.wustl.edu	37	1	16946434	16946434	+	RNA	SNP	C	C	T	rs367060	byFrequency;by2Hit2Allele	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16946434	16946434	C	T	SNP	CROCCL1	NR_026752	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.987	-	-	-	
CTNND2	1501	genome.wustl.edu	37	5	11346597	11346597	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	11346597	11346597	C	A	SNP	CTNND2	NM_001332	human	genbank	57_37b	-1	validated	missense	c.1515	p.Q505H	1.000	NULL	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors
DACH2	117154	genome.wustl.edu	37	X	86071092	86071092	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	86071092	86071092	T	C	SNP	DACH2	NM_053281	human	genbank	57_37b	+1	reviewed	silent	c.1740	p.A580	1.000	NULL	HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain	-	no_errors
ENSG00000246436	0	genome.wustl.edu	37	X	135863261	135863261	+	RNA	SNP	G	G	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135863261	135863261	G	T	SNP	ENSG00000246436	ENST00000500435	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.002	-	-	-	no_errors
ENSG00000247060	0	genome.wustl.edu	37	9	111845503	111845503	+	RNA	SNP	C	C	G	rs7049112	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	111845503	111845503	C	G	SNP	ENSG00000247060	ENST00000502151	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
FAM75C1	441452	genome.wustl.edu	37	9	90538208	90538208	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	90538208	90538208	G	A	SNP	FAM75C1	NM_001145124	human	genbank	57_37b	+1	validated	missense	c.3386	p.S1129N	0.003	NULL	NULL	-	no_errors
FAT1	2195	genome.wustl.edu	37	4	187525601	187525601	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	187525601	187525601	G	A	SNP	FAT1	NM_005245	human	genbank	57_37b	-1	reviewed	missense	c.10478	p.P3493L	0.998	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_CADHERIN_1,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors
G6PD	2539	genome.wustl.edu	37	X	153761953	153761953	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153761953	153761953	A	T	SNP	G6PD	ENST00000369620	human	ensembl	57_37b	-1	known	silent	c.840	p.G280	0.000	HMMPfam_G6PD_C	superfamily_NAD(P)-bd,HMMPfam_G6PD_N,PatternScan_G6P_DEHYDROGENASE,superfamily_SSF55347,HMMPfam_G6PD_C	-	no_errors
HADHB	3032	genome.wustl.edu	37	2	26505908	26505908	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	26505908	26505908	A	T	SNP	HADHB	NM_000183	human	genbank	57_37b	+1	reviewed	missense	c.1050	p.Q350H	0.999	superfamily_Thiolase-like,HMMPfam_Thiolase_C	superfamily_Thiolase-like,HMMPfam_Thiolase_N,PatternScan_THIOLASE_1,HMMPfam_Thiolase_C,PatternScan_THIOLASE_2,PatternScan_THIOLASE_3	-	no_errors
HAUS8	93323	genome.wustl.edu	37	19	17169452	17169452	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17169452	17169452	C	G	SNP	HAUS8	NM_033417	human	genbank	57_37b	-1	validated	missense	c.552	p.E184D	0.056	NULL	NULL	-	no_errors
HDAC6	10013	genome.wustl.edu	37	X	48672895	48672895	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48672895	48672895	C	T	SNP	HDAC6	NM_006044	human	genbank	57_37b	+1	reviewed	silent	c.855	p.P285	1.000	superfamily_SSF52768,HMMPfam_Hist_deacetyl	superfamily_SSF52768,HMMPfam_Hist_deacetyl,HMMSmart_ZnF_UBP,HMMPfam_zf-UBP	-	no_errors
JAK1	3716	genome.wustl.edu	37	1	65301180	65301180	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	65301180	65301180	T	G	SNP	JAK1	NM_002227	human	genbank	57_37b	-1	reviewed	missense	c.3268	p.K1090Q	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550,HMMSmart_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
KCNT2	343450	genome.wustl.edu	37	1	196311258	196311258	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	196311258	196311258	C	T	SNP	KCNT2	NM_198503	human	genbank	57_37b	-1	validated	missense	c.1504	p.E502K	1.000	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_BK_channel_a	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_BK_channel_a	-	no_errors
LILRA3	11026	genome.wustl.edu	37	19	54802507	54802507	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54802507	54802507	C	T	SNP	LILRA3	NM_006865	human	genbank	57_37b	-1	validated	missense	c.934	p.D312N	0.038	superfamily_SSF48726,HMMSmart_IG	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors
LOC653111	653111	genome.wustl.edu	37	11	89774388	89774388	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	89774388	89774388	G	T	SNP	LOC653111	XM_926073	human	genbank	57_37b	+1	model	missense	c.1029	p.W343C	0.984	HMMPfam_SPRY,HMMSmart_SM00449	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors
LUZP2	338645	genome.wustl.edu	37	11	25098915	25098915	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	25098915	25098915	C	T	SNP	LUZP2	NM_001009909	human	genbank	57_37b	+1	validated	missense	c.899	p.P300L	0.000	NULL	NULL	-	no_errors
NCOA3	8202	genome.wustl.edu	37	20	46264773	46264773	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	46264773	46264773	T	G	SNP	NCOA3	NM_181659	human	genbank	57_37b	+1	reviewed	missense	c.1643	p.L548W	0.999	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_SRC-1,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_Nuc_rec_co-act,HMMPfam_DUF1518	-	no_errors
NHS	4810	genome.wustl.edu	37	X	17745318	17745318	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	17745318	17745318	C	T	SNP	NHS	NM_198270	human	genbank	57_37b	+1	reviewed	missense	c.3029	p.T1010M	1.000	NULL	NULL	-	no_errors
OPHN1	4983	genome.wustl.edu	37	X	67339171	67339171	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	67339171	67339171	G	C	SNP	OPHN1	NM_002547	human	genbank	57_37b	-1	reviewed	missense	c.1280	p.P427R	1.000	superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors
PCDH19	57526	genome.wustl.edu	37	X	99657715	99657715	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	99657715	99657715	G	A	SNP	PCDH19	NM_001105243	human	genbank	57_37b	-1	validated	missense	c.2282	p.T761I	1.000	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCF11	51585	genome.wustl.edu	37	11	82877733	82877733	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	82877733	82877733	A	G	SNP	PCF11	NM_015885	human	genbank	57_37b	+1	validated	silent	c.1794	p.K598	1.000	NULL	superfamily_ENTH/VHS domain,HMMSmart_SM00582,HMMPfam_DUF618	-	no_errors
PDZD8	118987	genome.wustl.edu	37	10	119043132	119043132	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	119043132	119043132	A	G	SNP	PDZD8	NM_173791	human	genbank	57_37b	-1	provisional	missense	c.3112	p.F1038L	1.000	NULL	PatternScan_ZF_DAG_PE_1,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SSF57889,HMMPfam_C1_1,HMMSmart_C1	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	
PLCXD1	55344	genome.wustl.edu	37	X	209780	209780	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	209780	209780	C	T	SNP	PLCXD1	NM_018390	human	genbank	57_37b	+1	validated	missense	c.628	p.R210W	0.101	superfamily_PLC-like_Pdiesterase_TIM-brl	superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors
PMS2	5395	genome.wustl.edu	37	7	6031635	6031635	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6031635	6031635	T	C	SNP	PMS2	NM_000535	human	genbank	57_37b	-1	reviewed	silent	c.957	p.P319	0.966	superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_DNA_mis_repair	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_DNA_mis_repair,HMMPfam_MutL_C	-	no_errors
POU4F2	5458	genome.wustl.edu	37	4	147561836	147561836	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	147561836	147561836	G	A	SNP	POU4F2	NM_004575	human	genbank	57_37b	+1	validated	missense	c.1106	p.R369Q	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
PPARGC1B	133522	genome.wustl.edu	37	5	149212267	149212267	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	149212267	149212267	C	T	SNP	PPARGC1B	NM_133263	human	genbank	57_37b	+1	reviewed	nonsense	c.631	p.R211*	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
PRPF4	9128	genome.wustl.edu	37	9	116050502	116050502	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	116050502	116050502	G	-	DEL	PRPF4	NM_004697	human	genbank	57_37b	+1	provisional	frame_shift_del	c.983	p.V329fs	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_PEROXIDASE_2	HMMSmart_SM00500,HMMPfam_PRP4,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_PEROXIDASE_2,PatternScan_WD_REPEATS_1	(deletion:cds_exon[116050455,116050544])	no_errors
PRUNE	58497	genome.wustl.edu	37	1	151001299	151001299	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151001299	151001299	A	G	SNP	PRUNE	NM_021222	human	genbank	57_37b	+1	provisional	missense	c.812	p.H271R	0.005	superfamily_DHH phosphoesterases,HMMPfam_DHHA2	HMMPfam_DHH,superfamily_DHH phosphoesterases,HMMPfam_DHHA2,PatternScan_GLYCOSYL_HYDROL_F5	-	no_errors
PSMA8	143471	genome.wustl.edu	37	18	23731889	23731889	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	23731889	23731889	G	T	SNP	PSMA8	NM_144662	human	genbank	57_37b	+1	validated	silent	c.315	p.T105	0.913	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome_A_N,PatternScan_PROTEASOME_A,HMMPfam_Proteasome	-	no_errors
RAB11FIP5	26056	genome.wustl.edu	37	2	73316121	73316121	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	73316121	73316121	G	A	SNP	RAB11FIP5	NM_015470	human	genbank	57_37b	-1	validated	silent	c.754	p.L252	0.967	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_RBD-FIP	-	no_errors
SHD	56961	genome.wustl.edu	37	19	4283129	4283129	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4283129	4283129	C	T	SNP	SHD	NM_020209	human	genbank	57_37b	+1	validated	missense	c.482	p.S161F	0.001	NULL	superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2	-	no_errors
SLC9A10	285335	genome.wustl.edu	37	3	111988846	111988846	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	111988846	111988846	T	G	SNP	SLC9A10	NM_183061	human	genbank	57_37b	-1	validated	missense	c.692	p.Q231P	0.087	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,PatternScan_WD_REPEATS_1,superfamily_cAMP-binding domain-like,HMMPfam_cNMP_binding	-	no_errors
TATDN3	128387	genome.wustl.edu	37	1	212965284	212965284	+	Silent	SNP	C	C	G	rs61736926	byCluster;byFrequency;by1000genomes	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	212965284	212965284	C	G	SNP	TATDN3	NM_001042552	human	genbank	57_37b	+1	validated	silent	c.21	p.G7	0.000	superfamily_Metallo-dependent hydrolases	superfamily_Metallo-dependent hydrolases,HMMPfam_TatD_DNase	-	
TCF20	6942	genome.wustl.edu	37	22	42609296	42609298	+	In_Frame_Del	DEL	GTT	GTT	-	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	GTT	GTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	42609296	42609298	GTT	-	DEL	TCF20	NM_005650	human	genbank	57_37b	-1	reviewed	in_frame_del	c.2016_2014	p.N672in_frame_del	0.563:0.551:0.499	NULL	HMMSmart_SM00249	(deletion:cds_exon[42605657,42611311])	no_errors
TOX4	9878	genome.wustl.edu	37	14	21961324	21961324	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21961324	21961324	G	T	SNP	TOX4	NM_014828	human	genbank	57_37b	+1	validated	nonsense	c.1549	p.E517*	1.000	NULL	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors
TTC15	51112	genome.wustl.edu	37	2	3392295	3392295	+	Missense_Mutation	SNP	A	A	G	rs11686212	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	3392295	3392295	A	G	SNP	TTC15	NM_016030	human	genbank	57_37b	+1	validated	missense	c.901	p.S301G	1.000	NULL	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	-	
ZNF639	51193	genome.wustl.edu	37	3	179051631	179051631	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	179051631	179051631	G	T	SNP	ZNF639	NM_016331	human	genbank	57_37b	+1	provisional	missense	c.879	p.Q293H	1.000	superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors
