Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADAMTSL3	57188	genome.wustl.edu	37	15	84700109	84700109	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	84700109	84700109	G	A	SNP	ADAMTSL3	NM_207517	human	genbank	57_37b	+1	validated	missense	c.4679	p.R1560H	0.000	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_PLAC	-	no_errors
BSN	8927	genome.wustl.edu	37	3	49694979	49694979	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49694979	49694979	G	A	SNP	BSN	NM_003458	human	genbank	57_37b	+1	reviewed	missense	c.7990	p.V2664M	0.996	NULL	HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF	-	no_errors
CBFB	865	genome.wustl.edu	37	16	67100664	67100664	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67100664	67100664	G	A	SNP	CBFB	NM_022845	human	genbank	57_37b	+1	reviewed	missense	c.362	p.G121D	1.000	HMMPfam_CBF_beta,superfamily_CBF_beta	HMMPfam_CBF_beta,superfamily_CBF_beta	-	no_errors
CNGB1	1258	genome.wustl.edu	37	16	57951250	57951250	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57951250	57951250	G	A	SNP	CNGB1	NM_001297	human	genbank	57_37b	-1	reviewed	silent	c.2088	p.Y696	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	no_errors
CSNK1G3	1456	genome.wustl.edu	37	5	122911423	122911423	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	122911423	122911423	A	G	SNP	CSNK1G3	NM_001044723	human	genbank	57_37b	+1	validated	missense	c.439	p.I147V	1.000	superfamily_Kinase_like,HMMPfam_Pkinase	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ENSG00000186445	0	genome.wustl.edu	37	14	20181469	20181469	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20181469	20181469	C	A	SNP	ENSG00000186445	ENST00000334072	human	ensembl	57_37b	-1	known	missense	c.607	p.D203Y	0.634	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
ENSG00000246421	0	genome.wustl.edu	37	21	46306607	46306607	+	RNA	SNP	C	C	T	rs5030673	byCluster;byFrequency;by1000genomes	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46306607	46306607	C	T	SNP	ENSG00000246421	ENST00000500049	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	
FAM171B	165215	genome.wustl.edu	37	2	187559047	187559047	+	Silent	SNP	G	G	A	rs73979342	byCluster;byFrequency;by1000genomes	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	187559047	187559047	G	A	SNP	FAM171B	NM_177454	human	genbank	57_37b	+1	validated	silent	c.147	p.Q49	0.634	NULL	HMMPfam_UPF0560	-	
GRHL2	79977	genome.wustl.edu	37	8	102571041	102571041	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	102571041	102571041	G	T	SNP	GRHL2	NM_024915	human	genbank	57_37b	+1	reviewed	splice_site	c.678+1	e4+1	1.000	-	-	-	no_errors
HELZ	9931	genome.wustl.edu	37	17	65157188	65157188	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	65157188	65157188	A	C	SNP	HELZ	NM_014877	human	genbank	57_37b	-1	validated	missense	c.1900	p.W634G	1.000	superfamily_SSF52540	superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF52540,HMMPfam_PAM2	-	no_errors
HIST1H1C	3006	genome.wustl.edu	37	6	26056062	26056062	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26056062	26056062	T	C	SNP	HIST1H1C	NM_005319	human	genbank	57_37b	-1	reviewed	missense	c.595	p.K199E	1.000	NULL	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Linker_histone"	-	no_errors
IGSF1	3547	genome.wustl.edu	37	X	130410201	130410201	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	130410201	130410201	A	T	SNP	IGSF1	NM_001555	human	genbank	57_37b	-1	reviewed	missense	c.2630	p.L877H	1.000	superfamily_Immunoglobulin	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408	-	no_errors
ITIH5	80760	genome.wustl.edu	37	10	7618501	7618501	+	Silent	SNP	A	A	G	rs2275068	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	7618501	7618501	A	G	SNP	ITIH5	NM_030569	human	genbank	57_37b	-1	validated	silent	c.1893	p.D631	0.000	NULL	HMMSmart_SM00609,HMMPfam_VIT,HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_ITI_HC_C	-	
KIAA1409	57578	genome.wustl.edu	37	14	94088964	94088964	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	94088964	94088964	G	T	SNP	KIAA1409	NM_020818	human	genbank	57_37b	+1	validated	missense	c.4854	p.E1618D	1.000	NULL	NULL	-	no_errors
KIAA1984	84960	genome.wustl.edu	37	9	139701290	139701291	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139701290	139701291	-	C	INS	KIAA1984	NM_001039374	human	genbank	57_37b	+1	validated	frame_shift_ins	c.1360_1361	p.R454fs	0.000:0.000	NULL	NULL	-	no_errors
LOC654780	654780	genome.wustl.edu	37	16	84228613	84228613	+	RNA	DEL	T	T	-	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84228613	84228613	T	-	DEL	LOC654780	XR_040612	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.005	-	-	(deletion:rna[84228363,84228762])	no_errors
LRP2	4036	genome.wustl.edu	37	2	170030640	170030640	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170030640	170030640	G	A	SNP	LRP2	NM_004525	human	genbank	57_37b	-1	reviewed	silent	c.10803	p.C3601	0.975	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_2,superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1	-	no_errors
MAT1A	4143	genome.wustl.edu	37	10	82034842	82034842	+	Silent	SNP	A	A	G	rs10887711	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	82034842	82034842	A	G	SNP	MAT1A	NM_000429	human	genbank	57_37b	-1	reviewed	silent	c.882	p.A294	0.000	HMMPfam_S-AdoMet_synt_C,superfamily_S-AdoMet_synt	HMMPfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synt,HMMPfam_S-AdoMet_synt_M,PatternScan_ADOMET_SYNTHETASE_1,HMMPfam_S-AdoMet_synt_C,PatternScan_ADOMET_SYNTHETASE_2	-	
MIR548H4	0	genome.wustl.edu	37	8	26906434	26906438	+	RNA	DEL	TAAAG	TAAAG	-	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	TAAAG	TAAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	26906434	26906438	TAAAG	-	DEL	MIR548H4	ENST00000408689	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.003:0.006:0.031:0.044:0.062	-	-	(deletion:rna[26906370,26906480])	no_errors
MYO5B	4645	genome.wustl.edu	37	18	47432808	47432808	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	47432808	47432808	G	A	SNP	MYO5B	NM_001080467	human	genbank	57_37b	-1	reviewed	missense	c.2395	p.R799W	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_DIL	-	no_errors
OR10H2	26538	genome.wustl.edu	37	19	15839336	15839336	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15839336	15839336	G	A	SNP	OR10H2	NM_013939	human	genbank	57_37b	+1	validated	silent	c.483	p.S161	0.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
OTUD6A	139562	genome.wustl.edu	37	X	69282426	69282426	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	69282426	69282426	G	A	SNP	OTUD6A	NM_207320	human	genbank	57_37b	+1	provisional	missense	c.52	p.E18K	0.034	NULL	superfamily_SSF54001,HMMPfam_OTU	-	no_errors
PIGQ	9091	genome.wustl.edu	37	16	630902	630902	+	Silent	SNP	C	C	G	rs1045274	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	630902	630902	C	G	SNP	PIGQ	NM_148920	human	genbank	57_37b	+1	reviewed	silent	c.1461	p.L487	0.918	NULL	HMMPfam_Gpi1	-	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PRPF4B	8899	genome.wustl.edu	37	6	4049302	4049302	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	4049302	4049302	A	G	SNP	PRPF4B	NM_003913	human	genbank	57_37b	+1	reviewed	missense	c.1988	p.N663S	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
PRRX1	5396	genome.wustl.edu	37	1	170695530	170695530	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	170695530	170695530	C	T	SNP	PRRX1	NM_022716	human	genbank	57_37b	+1	reviewed	missense	c.587	p.A196V	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR	-	no_errors
RAPGEF4	11069	genome.wustl.edu	37	2	173891808	173891808	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	173891808	173891808	G	C	SNP	RAPGEF4	NM_007023	human	genbank	57_37b	+1	validated	splice_site	c.2380-1	e25-1	1.000	-	-	-	no_errors
SACS	26278	genome.wustl.edu	37	13	23912580	23912580	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	23912580	23912580	G	C	SNP	SACS	NM_014363	human	genbank	57_37b	-1	reviewed	missense	c.5435	p.T1812R	1.000	NULL	superfamily_Ubiquitin-like,HMMPfam_ubiquitin,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,superfamily_Chaperone J-domain,HMMPfam_HEPN,superfamily_Nucleotidyltransferase substrate binding subunit/domain,HMMSmart_SM00748	-	no_errors
SIPA1L2	57568	genome.wustl.edu	37	1	232651059	232651059	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	232651059	232651059	T	G	SNP	SIPA1L2	NM_020808	human	genbank	57_37b	-1	validated	missense	c.27	p.E9D	1.000	NULL	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
SLC17A7	57030	genome.wustl.edu	37	19	49938068	49938069	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49938068	49938069	-	A	INS	SLC17A7	NM_020309	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.506_505	p.Y169fs	1.000:1.000	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors
STK11IP	114790	genome.wustl.edu	37	2	220471821	220471821	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220471821	220471821	C	T	SNP	STK11IP	ENST00000456909	human	ensembl	57_37b	+1	known	missense	c.1181	p.T394M	0.945	NULL	superfamily_Outer arm dynein light chain 1,HMMPfam_LRR_1	-	no_errors
SYNE2	23224	genome.wustl.edu	37	14	64625506	64625506	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	64625506	64625506	A	G	SNP	SYNE2	NM_182914	human	genbank	57_37b	+1	reviewed	missense	c.15956	p.N5319S	0.676	HMMSmart_SPEC,superfamily_Spectrin	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH	-	no_errors
TBL1XR1	79718	genome.wustl.edu	37	3	176769296	176769297	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	176769296	176769297	TA	-	DEL	TBL1XR1	NM_024665	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.423_422	p.I141fs	1.000:1.000	NULL	HMMSmart_LisH,HMMPfam_LisH,HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	(deletion:cds_exon[176769292,176769514])	no_errors
TBL1XR1	79718	genome.wustl.edu	37	3	176769299	176769300	+	Frame_Shift_Ins	INS	-	-	TG	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	176769299	176769300	-	TG	INS	TBL1XR1	NM_024665	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.420_419	p.A142fs	0.264:0.288	NULL	HMMSmart_WD40,HMMSmart_LisH,superfamily_WD40_like,HMMPfam_LisH,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
TRHDE	29953	genome.wustl.edu	37	12	72866866	72866866	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	72866866	72866866	C	T	SNP	TRHDE	NM_013381	human	genbank	57_37b	+1	reviewed	missense	c.1355	p.T452M	1.000	HMMPfam_Peptidase_M1,superfamily_SSF55486	superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE	-	no_errors
TRPV3	162514	genome.wustl.edu	37	17	3431412	3431412	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	3431412	3431412	C	T	SNP	TRPV3	NM_145068	human	genbank	57_37b	-1	reviewed	silent	c.1410	p.P470	0.936	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans	-	no_errors
TTC4	7268	genome.wustl.edu	37	1	55183238	55183238	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55183238	55183238	A	G	SNP	TTC4	NM_004623	human	genbank	57_37b	+1	validated	silent	c.303	p.S101	0.003	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
TUFT1	7286	genome.wustl.edu	37	1	151512895	151512895	+	Missense_Mutation	SNP	A	A	G	rs3828054	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151512895	151512895	A	G	SNP	TUFT1	NM_020127	human	genbank	57_37b	+1	validated	missense	c.53	p.Q18R	0.763	NULL	NULL	-	
TYK2	7297	genome.wustl.edu	37	19	10469975	10469975	+	Missense_Mutation	SNP	A	A	C	rs12720356	byCluster;byFrequency;by1000genomes	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10469975	10469975	A	C	SNP	TYK2	NM_003331	human	genbank	57_37b	-1	reviewed	missense	c.2051	p.I684S	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550,HMMSmart_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	
UBE4B	10277	genome.wustl.edu	37	1	10231364	10231364	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	10231364	10231364	G	A	SNP	UBE4B	NM_001105562	human	genbank	57_37b	+1	reviewed	missense	c.3502	p.A1168T	1.000	HMMPfam_Ufd2P_core	HMMPfam_Ufd2P_core,superfamily_RING/U-box,HMMPfam_U-box,HMMSmart_SM00504	-	no_errors
WNK3	65267	genome.wustl.edu	37	X	54275401	54275401	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	54275401	54275401	A	G	SNP	WNK3	NM_020922	human	genbank	57_37b	-1	validated	missense	c.3380	p.I1127T	0.260	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ZNF275	10838	genome.wustl.edu	37	X	152613112	152613112	+	Silent	SNP	C	C	T	rs7066295	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	152613112	152613112	C	T	SNP	ZNF275	NM_001080485	human	genbank	57_37b	+1	validated	silent	c.969	p.C323	0.177	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	
