Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ANKRD34B	340120	genome.wustl.edu	37	5	79855031	79855031	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	79855031	79855031	C	A	SNP	ANKRD34B	NM_001004441	human	genbank	57_37b	-1	validated	missense	c.808	p.D270Y	0.998	NULL	HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank	-	no_errors
ATAD5	79915	genome.wustl.edu	37	17	29221047	29221047	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	29221047	29221047	A	G	SNP	ATAD5	NM_024857	human	genbank	57_37b	+1	provisional	missense	c.5176	p.K1726E	0.997	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	-	no_errors
C3orf56	285311	genome.wustl.edu	37	3	126916433	126916434	+	RNA	INS	-	-	TTC	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	126916433	126916434	-	TTC	INS	C3orf56	XR_078289	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.043:0.029	-	-	-	no_errors
COL4A2	1284	genome.wustl.edu	37	13	111156284	111156284	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	111156284	111156284	G	A	SNP	COL4A2	NM_001846	human	genbank	57_37b	+1	reviewed	missense	c.4229	p.R1410Q	0.352	NULL	HMMPfam_Collagen,HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold	-	no_errors
COL7A1	1294	genome.wustl.edu	37	3	48612280	48612280	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48612280	48612280	C	A	SNP	COL7A1	NM_000094	human	genbank	57_37b	-1	reviewed	missense	c.6298	p.G2100C	0.720	NULL	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,HMMPfam_Collagen,superfamily_BPTI-like,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors
CSNK2A2	1459	genome.wustl.edu	37	16	58200581	58200581	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	58200581	58200581	C	G	SNP	CSNK2A2	NM_001896	human	genbank	57_37b	-1	validated	missense	c.734	p.R245P	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ENSG00000211562	0	genome.wustl.edu	37	8	48802690	48802691	+	RNA	INS	-	-	ATA	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	48802690	48802691	-	ATA	INS	ENSG00000211562	ENST00000390136	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000:0.002	-	-	-	no_errors
ENSG00000245029	0	genome.wustl.edu	37	1	16889890	16889891	+	RNA	DEL	TG	TG	-	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16889890	16889891	TG	-	DEL	ENSG00000245029	ENST00000500210	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001:0.000	-	-	(deletion:rna[16888923,16890082])	no_errors
ENSG00000245914	0	genome.wustl.edu	37	3	13414992	13414992	+	RNA	SNP	T	T	C	rs6774485	byCluster;byHapMap;by1000genomes	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	13414992	13414992	T	C	SNP	ENSG00000245914	ENST00000500340	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
ENSG00000246721	0	genome.wustl.edu	37	4	68529224	68529224	+	RNA	SNP	A	A	T	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	68529224	68529224	A	T	SNP	ENSG00000246721	ENST00000429659	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
GNAS	2778	genome.wustl.edu	37	20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	rs11554273	byCluster	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	57484420	57484420	C	T	SNP	GNAS	NM_080425	human	genbank	57_37b	+1	reviewed	missense	c.2530	p.R844C	1.000	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Transducin (alpha subunit) insertion domain	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Transducin (alpha subunit) insertion domain	-	
HRNR	388697	genome.wustl.edu	37	1	152191578	152191578	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152191578	152191578	G	A	SNP	HRNR	NM_001009931	human	genbank	57_37b	-1	validated	nonsense	c.2527	p.R843*	0.000	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK	-	no_errors
KIAA1009	22832	genome.wustl.edu	37	6	84922694	84922694	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	84922694	84922694	C	T	SNP	KIAA1009	NM_014895	human	genbank	57_37b	-1	validated	silent	c.552	p.S184	0.752	NULL	NULL	-	no_errors
KIAA1429	25962	genome.wustl.edu	37	8	95508070	95508070	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	95508070	95508070	A	G	SNP	KIAA1429	NM_015496	human	genbank	57_37b	-1	validated	missense	c.4433	p.V1478A	0.999	NULL	NULL	-	no_errors
LOC338651	0	genome.wustl.edu	37	11	1619859	1619859	+	RNA	SNP	C	C	A	rs41351448	byCluster;byFrequency	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1619859	1619859	C	A	SNP	LOC338651	NR_021489	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-	
LOC402360	402360	genome.wustl.edu	37	9	23682669	23682669	+	Missense_Mutation	SNP	G	G	A	rs2217504	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	23682669	23682669	G	A	SNP	LOC402360	XM_002342894	human	genbank	57_37b	+1	model	missense	c.710	p.S237N	0.048	NULL	HMMPfam_Nop,superfamily_Nop domain	-	
MAGEC1	9947	genome.wustl.edu	37	X	140994265	140994265	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	140994265	140994265	G	A	SNP	MAGEC1	NM_005462	human	genbank	57_37b	+1	reviewed	missense	c.1075	p.E359K	0.021	NULL	HMMPfam_MAGE	-	no_errors
MCAM	4162	genome.wustl.edu	37	11	119185677	119185677	+	Missense_Mutation	SNP	T	C	C	rs34587557	byCluster;byFrequency;by1000genomes	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	119185677	119185677	T	C	SNP	MCAM	NM_006500	human	genbank	57_37b	-1	validated	missense	c.266	p.E89G	1.000	HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin	HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig	-	
PLCXD2	257068	genome.wustl.edu	37	3	111432878	111432878	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	111432878	111432878	C	T	SNP	PLCXD2	NM_001134478	human	genbank	57_37b	+1	validated	missense	c.769	p.R257W	0.000	superfamily_PLC-like phosphodiesterases	superfamily_PLC-like phosphodiesterases,HMMSmart_SM00148	-	no_errors
PQLC2	54896	genome.wustl.edu	37	1	19652874	19652874	+	Missense_Mutation	SNP	G	G	A	rs41264079	byCluster;by1000genomes	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19652874	19652874	G	A	SNP	PQLC2	NM_001040125	human	genbank	57_37b	+1	validated	missense	c.518	p.G173D	0.000	NULL	HMMPfam_PQ-loop,HMMSmart_SM00679	-	
PREPL	9581	genome.wustl.edu	37	2	44556197	44556197	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	44556197	44556197	G	A	SNP	PREPL	NM_006036	human	genbank	57_37b	-1	reviewed	nonsense	c.1408	p.Q470*	0.619	superfamily_alpha/beta-Hydrolases	HMMPfam_Peptidase_S9_N,superfamily_Prolyl oligopeptidase N-terminal domain,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9	-	no_errors
PTPN14	5784	genome.wustl.edu	37	1	214557496	214557496	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	214557496	214557496	G	A	SNP	PTPN14	NM_005401	human	genbank	57_37b	-1	reviewed	missense	c.1702	p.P568S	1.000	NULL	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
RAB30	27314	genome.wustl.edu	37	11	82698729	82698729	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	82698729	82698729	G	A	SNP	RAB30	NM_014488	human	genbank	57_37b	-1	provisional	silent	c.261	p.L87	0.997	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors
REEP4	80346	genome.wustl.edu	37	8	21997738	21997738	+	Silent	SNP	A	T	T	rs35574275	byCluster;byFrequency;by1000genomes	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	21997738	21997738	A	T	SNP	REEP4	NM_025232	human	genbank	57_37b	-1	provisional	silent	c.129	p.I43	0.711	HMMPfam_TB2_DP1_HVA22	HMMPfam_TB2_DP1_HVA22	-	
RETSAT	54884	genome.wustl.edu	37	2	85571455	85571455	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	85571455	85571455	A	T	SNP	RETSAT	NM_017750	human	genbank	57_37b	-1	validated	missense	c.1273	p.S425T	0.004	superfamily_FAD/NAD(P)-binding domain	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_2,PatternScan_RCC1_2	-	no_errors
RYR3	6263	genome.wustl.edu	37	15	33795930	33795930	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	33795930	33795930	C	T	SNP	RYR3	NM_001036	human	genbank	57_37b	+1	validated	silent	c.270	p.G90	1.000	HMMPfam_Ins145_P3_rec	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
SVEP1	79987	genome.wustl.edu	37	9	113189893	113189893	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	113189893	113189893	C	T	SNP	SVEP1	NM_153366	human	genbank	57_37b	-1	validated	missense	c.5953	p.V1985I	0.984	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Growth factor receptor domain,PatternScan_EGF_2,HMMPfam_GCC2_GCC3,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_HYR,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Pentaxin,HMMPfam_EGF_CA,HMMPfam_EGF_2	-	no_errors
TMPRSS11B	132724	genome.wustl.edu	37	4	69101719	69101719	+	Splice_Site	DEL	C	C	-	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	69101719	69101719	C	-	DEL	TMPRSS11B	NM_182502	human	genbank	57_37b	-1	validated	splice_site_del	c.308+1	e4+1	0.861	-	-	(deletion:intron[69100342,69101719])	no_errors
TRPM3	80036	genome.wustl.edu	37	9	73442886	73442886	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	73442886	73442886	C	A	SNP	TRPM3	NM_001007471	human	genbank	57_37b	-1	reviewed	missense	c.850	p.V284F	0.997	NULL	HMMPfam_Ion_trans	-	no_errors
TTC4	7268	genome.wustl.edu	37	1	55194092	55194092	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55194092	55194092	T	C	SNP	TTC4	NM_004623	human	genbank	57_37b	+1	validated	missense	c.668	p.L223P	1.000	NULL	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
VGLL3	389136	genome.wustl.edu	37	3	87018135	87018135	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	87018135	87018135	G	A	SNP	VGLL3	NM_016206	human	genbank	57_37b	-1	validated	missense	c.542	p.A181V	0.714	NULL	HMMPfam_Vg_Tdu,HMMSmart_SM00711	-	no_errors
