Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AKAP4	8852	genome.wustl.edu	37	X	49957345	49957345	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49957345	49957345	C	T	SNP	AKAP4	NM_003886	human	genbank	57_37b	-1	reviewed	silent	c.2019	p.A673	0.012	HMMSmart_SM00807,HMMPfam_AKAP_110	HMMSmart_SM00807,HMMPfam_RII_binding_1,HMMPfam_AKAP_110	-	no_errors
ARSE	415	genome.wustl.edu	37	X	2853148	2853148	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	2853148	2853148	G	A	SNP	ARSE	NM_000047	human	genbank	57_37b	-1	reviewed	missense	c.1495	p.P499S	0.820	superfamily_Alkaline_phosphatase_core,HMMPfam_Sulfatase	superfamily_Alkaline_phosphatase_core,HMMPfam_Sulfatase,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors
BST2	684	genome.wustl.edu	37	19	17516273	17516273	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17516273	17516273	C	G	SNP	BST2	NM_004335	human	genbank	57_37b	-1	reviewed	missense	c.112	p.G38R	0.000	NULL	NULL	-	no_errors
CACNA1H	8912	genome.wustl.edu	37	16	1251803	1251803	+	Silent	SNP	C	C	T	rs9922076	byCluster;by2Hit2Allele;by1000genomes	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1251803	1251803	C	T	SNP	CACNA1H	NM_021098	human	genbank	57_37b	+1	reviewed	silent	c.1353	p.S451	0.085	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	
CORO6	84940	genome.wustl.edu	37	17	27948434	27948434	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27948434	27948434	G	A	SNP	CORO6	NM_032854	human	genbank	57_37b	-1	validated	silent	c.6	p.S2	1.000	NULL	HMMPfam_DUF1899,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_DUF1900	-	no_errors
CREB3L3	84699	genome.wustl.edu	37	19	4171690	4171690	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4171690	4171690	C	T	SNP	CREB3L3	ENST00000252587	human	ensembl	57_37b	+1	known	missense	c.776	p.A259V	0.427	NULL	superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1,HMMSmart_BRLZ,PatternScan_BZIP_BASIC	-	no_errors
CROCC	9696	genome.wustl.edu	37	1	17249200	17249200	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17249200	17249200	G	A	SNP	CROCC	NM_014675	human	genbank	57_37b	+1	validated	missense	c.103	p.A35T	0.001	NULL	superfamily_Prefoldin	-	no_errors
DCLK2	166614	genome.wustl.edu	37	4	151153908	151153908	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	151153908	151153908	C	T	SNP	DCLK2	NM_001040260	human	genbank	57_37b	+1	validated	silent	c.1494	p.N498	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Doublecortin (DC),HMMSmart_SM00537,HMMPfam_DCX,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
DEFA4	1669	genome.wustl.edu	37	8	6794318	6794318	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	6794318	6794318	C	T	SNP	DEFA4	NM_001925	human	genbank	57_37b	-1	reviewed	missense	c.104	p.R35H	0.000	HMMPfam_Defensin_propep	HMMPfam_Defensin_propep,HMMSmart_SM00048,HMMPfam_Defensin_1,PatternScan_DEFENSIN	-	no_errors
DLGAP2	9228	genome.wustl.edu	37	8	1497608	1497608	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	1497608	1497608	C	T	SNP	DLGAP2	NM_004745	human	genbank	57_37b	+1	reviewed	missense	c.749	p.A250V	0.006	NULL	HMMPfam_GKAP	-	no_errors
DNASE2	1777	genome.wustl.edu	37	19	12991929	12991929	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12991929	12991929	C	G	SNP	DNASE2	NM_001375	human	genbank	57_37b	-1	reviewed	missense	c.124	p.G42R	0.014	HMMPfam_DNase_II	HMMPfam_DNase_II,PatternScan_AKH	-	no_errors
DOC2A	8448	genome.wustl.edu	37	16	30018123	30018123	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30018123	30018123	C	T	SNP	DOC2A	NM_003586	human	genbank	57_37b	-1	reviewed	silent	c.861	p.S287	0.008	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
DPPA2	151871	genome.wustl.edu	37	3	109031471	109031471	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	109031471	109031471	G	A	SNP	DPPA2	NM_138815	human	genbank	57_37b	-1	validated	silent	c.102	p.D34	0.001	NULL	HMMSmart_SAP	-	no_errors
DUOX2	50506	genome.wustl.edu	37	15	45396252	45396252	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	45396252	45396252	C	T	SNP	DUOX2	NM_014080	human	genbank	57_37b	-1	reviewed	splice_site	c.2561-1	e19-1	1.000	-	-	-	no_errors
ELAVL1	1994	genome.wustl.edu	37	19	8032461	8032461	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8032461	8032461	G	A	SNP	ELAVL1	NM_001419	human	genbank	57_37b	-1	reviewed	missense	c.644	p.A215V	1.000	superfamily_RNA-binding domain RBD	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
FDX1L	112812	genome.wustl.edu	37	19	10426422	10426422	+	Silent	SNP	A	A	C	rs378395	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10426422	10426422	A	C	SNP	FDX1L	NM_001031734	human	genbank	57_37b	-1	validated	silent	c.159	p.A53	0.000	NULL	superfamily_Ferredoxin,HMMPfam_Fer2,PatternScan_ADX	-	
GPATCH3	63906	genome.wustl.edu	37	1	27219895	27219895	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	27219895	27219895	C	A	SNP	GPATCH3	NM_022078	human	genbank	57_37b	-1	validated	missense	c.1096	p.V366L	0.867	NULL	HMMSmart_G_patch,HMMPfam_G-patch	-	no_errors
HOXA1	3198	genome.wustl.edu	37	7	27134949	27134949	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	27134949	27134949	C	T	SNP	HOXA1	NM_005522	human	genbank	57_37b	-1	reviewed	missense	c.583	p.A195T	0.610	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
KALRN	8997	genome.wustl.edu	37	3	124380761	124380761	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	124380761	124380761	C	T	SNP	KALRN	NM_001024660	human	genbank	57_37b	+1	reviewed	silent	c.6328	p.L2110	1.000	superfamily_DBL homology domain (DH-domain)	superfamily_CRAL/TRIO domain,HMMSmart_SM00516,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMSmart_SM00233,HMMPfam_PH,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
KCTD16	57528	genome.wustl.edu	37	5	143853657	143853657	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	143853657	143853657	T	C	SNP	KCTD16	NM_020768	human	genbank	57_37b	+1	validated	silent	c.1267	p.L423	0.927	NULL	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra	-	no_errors
KIAA0802	23255	genome.wustl.edu	37	18	8796377	8796377	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	8796377	8796377	C	T	SNP	KIAA0802	NM_015210	human	genbank	57_37b	+1	predicted	missense	c.2158	p.L720F	1.000	NULL	NULL	-	no_errors
KRT80	144501	genome.wustl.edu	37	12	52579389	52579389	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52579389	52579389	C	T	SNP	KRT80	ENST00000301446	human	ensembl	57_37b	-1	known	missense	c.94	p.A32T	0.000	NULL	HMMPfam_Filament	-	no_errors
LIMA1	51474	genome.wustl.edu	37	12	50616346	50616346	+	Silent	SNP	A	A	G	rs3812825	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	50616346	50616346	A	G	SNP	LIMA1	ENST00000420992	human	ensembl	57_37b	-1	known	silent	c.72	p.T24	1.000	NULL	superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	
LOC100289317	0	genome.wustl.edu	37	22	45724194	45724194	+	Silent	SNP	T	T	C	rs113755814	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	45724194	45724194	T	C	SNP	LOC100289317	XM_002343782	human	genbank	57_37b	-1	model	silent	c.48	p.P16	0.143	NULL	NULL	-	
LOC203510	0	genome.wustl.edu	37	X	111933403	111933403	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	111933403	111933403	G	T	SNP	LOC203510	XM_001723892	human	genbank	57_37b	+1	model	missense	c.261	p.K87N	1.000	superfamily_HMG-box	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors
MEOX2	4223	genome.wustl.edu	37	7	15666489	15666489	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	15666489	15666489	C	T	SNP	MEOX2	NM_005924	human	genbank	57_37b	-1	reviewed	missense	c.572	p.R191K	1.000	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
MRPL24	79590	genome.wustl.edu	37	1	156708153	156708153	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156708153	156708153	G	A	SNP	MRPL24	NM_024540	human	genbank	57_37b	-1	reviewed	silent	c.261	p.V87	0.013	superfamily_Transl_SH3_like,HMMPfam_KOW	superfamily_Transl_SH3_like,HMMSmart_KOW,HMMPfam_KOW,PatternScan_RIBOSOMAL_L24	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9061379	9061379	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9061379	9061379	T	C	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	silent	c.26067	p.T8689	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
NLRP8	126205	genome.wustl.edu	37	19	56466066	56466066	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56466066	56466066	C	T	SNP	NLRP8	NM_176811	human	genbank	57_37b	+1	provisional	silent	c.642	p.I214	0.001	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
OTOF	9381	genome.wustl.edu	37	2	26706481	26706481	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	26706481	26706481	C	T	SNP	OTOF	NM_194248	human	genbank	57_37b	-1	reviewed	missense	c.1241	p.R414H	1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerB	-	no_errors
PAX8	7849	genome.wustl.edu	37	2	113993061	113993061	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	113993061	113993061	G	A	SNP	PAX8	NM_003466	human	genbank	57_37b	-1	reviewed	nonsense	c.997	p.Q333*	1.000	NULL	HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like,PatternScan_PAIRED_1	-	no_errors
PCNT	5116	genome.wustl.edu	37	21	47819611	47819611	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47819611	47819611	T	C	SNP	PCNT	NM_006031	human	genbank	57_37b	+1	reviewed	silent	c.4692	p.I1564	0.000	NULL	HMMPfam_PACT_coil_coil	-	no_errors
PGBD5	79605	genome.wustl.edu	37	1	230468761	230468761	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	230468761	230468761	C	T	SNP	PGBD5	NM_024554	human	genbank	57_37b	-1	reviewed	missense	c.1192	p.A398T	0.644	NULL	NULL	-	no_errors
PITPNM1	9600	genome.wustl.edu	37	11	67266164	67266164	+	Missense_Mutation	SNP	C	C	T	rs61755426	byCluster;by1000genomes	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67266164	67266164	C	T	SNP	PITPNM1	NM_004910	human	genbank	57_37b	-1	validated	missense	c.1387	p.V463I	0.861	NULL	HMMPfam_IP_trans,superfamily_Bet v1-like,HMMPfam_DDHD,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775	-	
QARS	5859	genome.wustl.edu	37	3	49135886	49135886	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49135886	49135886	C	G	SNP	QARS	NM_005051	human	genbank	57_37b	-1	reviewed	missense	c.1984	p.E662Q	1.000	HMMPfam_tRNA-synt_1c_C,superfamily_Ribosomal_L25rel	HMMPfam_tRNA_synt_1c_R1,HMMPfam_tRNA_synt_1c_R2,superfamily_SSF52374,HMMPfam_tRNA-synt_1c,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA-synt_1c_C,superfamily_Ribosomal_L25rel	-	no_errors
RAD54L2	23132	genome.wustl.edu	37	3	51664777	51664777	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	51664777	51664777	G	A	SNP	RAD54L2	NM_015106	human	genbank	57_37b	+1	validated	missense	c.655	p.E219K	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
RBMXL3	139804	genome.wustl.edu	37	X	114426666	114426666	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	114426666	114426666	G	A	SNP	RBMXL3	NM_001145346	human	genbank	57_37b	+1	provisional	missense	c.2662	p.E888K	0.999	NULL	HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1	-	no_errors
SCN7A	6332	genome.wustl.edu	37	2	167298248	167298248	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	167298248	167298248	C	A	SNP	SCN7A	NM_002976	human	genbank	57_37b	-1	validated	missense	c.1815	p.K605N	0.954	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc	-	no_errors
SEMA4A	64218	genome.wustl.edu	37	1	156146568	156146573	+	In_Frame_Del	DEL	TCCTCT	TCCTCT	-	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	TCCTCT	TCCTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156146568	156146573	TCCTCT	-	DEL	SEMA4A	NM_022367	human	genbank	57_37b	+1	provisional	in_frame_del	c.2066_2071	p.LF690in_frame_del	0.961:0.932:0.996:0.996:0.962:0.898	NULL	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold	(deletion:cds_exon[156146196,156146788])	no_errors
SLC28A3	64078	genome.wustl.edu	37	9	86894959	86894959	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	86894959	86894959	T	C	SNP	SLC28A3	NM_022127	human	genbank	57_37b	-1	provisional	missense	c.1759	p.I587V	1.000	HMMPfam_Nucleos_tra2_C	HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C	-	no_errors
TBP	6908	genome.wustl.edu	37	6	170871216	170871216	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	170871216	170871216	C	G	SNP	TBP	NM_003194	human	genbank	57_37b	+1	reviewed	missense	c.392	p.P131R	1.000	NULL	superfamily_TFIID_C/glycos_N,HMMPfam_TBP,PatternScan_TFIID	-	no_errors
TRIP12	9320	genome.wustl.edu	37	2	230678717	230678717	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	230678717	230678717	C	T	SNP	TRIP12	NM_004238	human	genbank	57_37b	-1	provisional	missense	c.1711	p.E571K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_WWE,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
TRMT1	55687	genome.wustl.edu	37	19	13218608	13218608	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	13218608	13218608	G	A	SNP	TRMT1	NM_001136035	human	genbank	57_37b	-1	validated	missense	c.1463	p.T488M	0.998	HMMPfam_TRM	HMMPfam_TRM,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH	-	no_errors
TTBK1	84630	genome.wustl.edu	37	6	43214504	43214504	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43214504	43214504	G	A	SNP	TTBK1	NM_032538	human	genbank	57_37b	+1	validated	missense	c.106	p.V36M	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
TTLL12	23170	genome.wustl.edu	37	22	43569738	43569738	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	43569738	43569738	G	A	SNP	TTLL12	NM_015140	human	genbank	57_37b	-1	provisional	nonsense	c.1324	p.R442*	1.000	HMMPfam_TTL	HMMPfam_TTL	-	no_errors
WDR19	57728	genome.wustl.edu	37	4	39247000	39247000	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	39247000	39247000	G	T	SNP	WDR19	NM_025132	human	genbank	57_37b	+1	reviewed	missense	c.2657	p.G886V	1.000	superfamily_TPR-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase,superfamily_TPR-like,HMMPfam_Clathrin	-	no_errors
YIPF6	286451	genome.wustl.edu	37	X	67718953	67718953	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	67718953	67718953	G	A	SNP	YIPF6	NM_173834	human	genbank	57_37b	+1	provisional	silent	c.45	p.S15	0.030	NULL	HMMPfam_Yip1	-	no_errors
