Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AACS	65985	genome.wustl.edu	37	12	125576043	125576043	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	125576043	125576043	T	A	SNP	AACS	NM_023928	human	genbank	57_37b	+1	validated	missense	c.544	p.S182T	1.000	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors
ACTR1A	10121	genome.wustl.edu	37	10	104247996	104247996	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	104247996	104247996	C	T	SNP	ACTR1A	NM_005736	human	genbank	57_37b	-1	reviewed	missense	c.226	p.E76K	1.000	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
ANKRD30B	374860	genome.wustl.edu	37	18	14803817	14803817	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	14803817	14803817	T	G	SNP	ANKRD30B	NM_001145029	human	genbank	57_37b	+1	validated	missense	c.2278	p.L760V	0.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
AP2M1	1173	genome.wustl.edu	37	3	183899476	183899489	+	Splice_Site	DEL	GCTTGCAGCGGGAA	GCTTGCAGCGGGAA	-	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	GCTTGCAGCGGGAA	GCTTGCAGCGGGAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	183899476	183899489	GCTTGCAGCGGGAA	-	DEL	AP2M1	NM_004068	human	genbank	57_37b	+1	reviewed	splice_site_del	c.708-8_708-1	e7-1	0.000:0.000:0.000:0.005:0.064:0.364:1.000:1.000:0.589:1.000:1.000:0.996:1.000:1.000	-	-	(deletion:intron[183899015,183899483], cds_exon[183899484,183899603])	no_errors
ARHGAP17	55114	genome.wustl.edu	37	16	24979688	24979688	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	24979688	24979688	C	G	SNP	ARHGAP17	NM_001006634	human	genbank	57_37b	-1	validated	missense	c.445	p.D149H	1.000	HMMPfam_BAR,HMMSmart_SM00721	HMMPfam_BAR,HMMSmart_SM00721,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,PatternScan_AA_TRNA_LIGASE_I	-	no_errors
ARHGEF1	9138	genome.wustl.edu	37	19	42410774	42410774	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42410774	42410774	T	C	SNP	ARHGEF1	NM_199002	human	genbank	57_37b	+1	reviewed	splice_site	c.2700+2	e27+2	0.991	-	-	-	no_errors
ARL6	84100	genome.wustl.edu	37	3	97506865	97506865	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	97506865	97506865	C	A	SNP	ARL6	NM_032146	human	genbank	57_37b	+1	reviewed	missense	c.381	p.F127L	1.000	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ARMC9	80210	genome.wustl.edu	37	2	232156119	232156119	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	232156119	232156119	C	T	SNP	ARMC9	NM_025139	human	genbank	57_37b	+1	validated	silent	c.1680	p.I560	1.000	superfamily_ARM-type_fold	HMMSmart_LisH,superfamily_ARM-type_fold	-	no_errors
BMPR2	659	genome.wustl.edu	37	2	203242213	203242213	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	203242213	203242213	C	T	SNP	BMPR2	NM_001204	human	genbank	57_37b	+1	reviewed	nonsense	c.16	p.Q6*	0.233	NULL	PatternScan_PROTEIN_KINASE_ST,superfamily_SSF57302,HMMPfam_Activin_recp,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
BTN3A1	11119	genome.wustl.edu	37	6	26412970	26412970	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26412970	26412970	A	G	SNP	BTN3A1	NM_194441	human	genbank	57_37b	+1	validated	silent	c.1056	p.K352	0.000	NULL	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406	-	no_errors
C10orf81	79949	genome.wustl.edu	37	10	115540387	115540387	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	115540387	115540387	C	G	SNP	C10orf81	ENST00000369312	human	ensembl	57_37b	+1	known	missense	c.948	p.I316M	1.000	NULL	NULL	-	no_errors
CARS2	79587	genome.wustl.edu	37	13	111319757	111319759	+	In_Frame_Del	DEL	ATG	ATG	-	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	ATG	ATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	111319757	111319759	ATG	-	DEL	CARS2	NM_024537	human	genbank	57_37b	-1	validated	in_frame_del	c.849_847	p.H283in_frame_del	0.835:1.000:1.000	superfamily_SSF52374,HMMPfam_tRNA-synt_1e	PatternScan_AA_TRNA_LIGASE_I,superfamily_SSF52374,HMMPfam_tRNA-synt_1e,superfamily_tRNAsyn_1a_bind	(deletion:cds_exon[111319687,111319820])	no_errors
CCDC144B	284047	genome.wustl.edu	37	17	18528551	18528551	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18528551	18528551	G	A	SNP	CCDC144B	ENST00000285176	human	ensembl	57_37b	-1	known	silent	c.210	p.D70	0.059	NULL	NULL	-	no_errors
CEP63	80254	genome.wustl.edu	37	3	134268924	134268924	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	134268924	134268924	A	G	SNP	CEP63	NM_025180	human	genbank	57_37b	+1	reviewed	missense	c.1202	p.Q401R	1.000	NULL	NULL	-	no_errors
CIITA	4261	genome.wustl.edu	37	16	11000848	11000848	+	Missense_Mutation	SNP	G	G	C	rs4774	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	11000848	11000848	G	C	SNP	CIITA	NM_000246	human	genbank	57_37b	+1	reviewed	missense	c.1499	p.G500A	0.009	HMMPfam_NACHT	HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368,HMMPfam_LRR_1	-	
CNGB1	1258	genome.wustl.edu	37	16	57965655	57965655	+	Silent	SNP	G	G	T	rs75406397	byCluster;byFrequency;by1000genomes	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57965655	57965655	G	T	SNP	CNGB1	NM_001297	human	genbank	57_37b	-1	reviewed	silent	c.1500	p.T500	0.998	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	
CPZ	8532	genome.wustl.edu	37	4	8620195	8620195	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	8620195	8620195	G	A	SNP	CPZ	NM_001014447	human	genbank	57_37b	+1	reviewed	missense	c.1543	p.G515S	1.000	HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain	HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain	-	no_errors
CSPP1	79848	genome.wustl.edu	37	8	68024243	68024243	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	68024243	68024243	A	G	SNP	CSPP1	NM_001077204	human	genbank	57_37b	+1	validated	missense	c.1262	p.E421G	1.000	NULL	NULL	-	no_errors
CYP27C1	339761	genome.wustl.edu	37	2	127952909	127952909	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	127952909	127952909	A	G	SNP	CYP27C1	NM_001001665	human	genbank	57_37b	-1	reviewed	splice_site	c.719+2	e4+2	1.000	-	-	-	no_errors
DDX26B	203522	genome.wustl.edu	37	X	134713802	134713802	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	134713802	134713802	G	C	SNP	DDX26B	NM_182540	human	genbank	57_37b	+1	validated	missense	c.2098	p.E700Q	0.008	NULL	superfamily_vWA-like,PatternScan_DEAD_ATP_HELICASE	-	no_errors
DHPS	1725	genome.wustl.edu	37	19	12788192	12788192	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12788192	12788192	T	G	SNP	DHPS	NM_001930	human	genbank	57_37b	-1	reviewed	missense	c.697	p.S233R	1.000	superfamily_DHS-like NAD/FAD-binding domain,HMMPfam_DS	superfamily_DHS-like NAD/FAD-binding domain,HMMPfam_DS	-	no_errors
DNAJA3	9093	genome.wustl.edu	37	16	4476089	4476089	+	Missense_Mutation	SNP	T	T	C	rs1139652	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4476089	4476089	T	C	SNP	DNAJA3	ENST00000431375	human	ensembl	57_37b	+1	known	missense	c.97	p.Y33H	1.000	NULL	superfamily_HSP40/DnaJ peptide-binding domain,superfamily_DnaJ/Hsp40 cysteine-rich domain,HMMPfam_DnaJ_CXXCXGXG,HMMPfam_DnaJ_C	-	
EIF3I	8668	genome.wustl.edu	37	1	32694340	32694340	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32694340	32694340	A	G	SNP	EIF3I	NM_003757	human	genbank	57_37b	+1	validated	missense	c.652	p.T218A	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
ENSG00000216173	0	genome.wustl.edu	37	14	99828629	99828632	+	RNA	DEL	TGTG	TGTG	-	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	TGTG	TGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	99828629	99828632	TGTG	-	DEL	ENSG00000216173	ENST00000401354	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	(deletion:rna[99828628,99828716])	no_errors
ENSG00000236421	0	genome.wustl.edu	37	16	15082151	15082151	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	15082151	15082151	G	A	SNP	ENSG00000236421	ENST00000329923	human	ensembl	57_37b	-1	known	missense	c.1867	p.P623S	1.000	HMMPfam_DUF2152	HMMPfam_DUF2152	-	no_errors
ENSG00000246098	0	genome.wustl.edu	37	12	123810015	123810015	+	RNA	SNP	A	A	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123810015	123810015	A	C	SNP	ENSG00000246098	ENST00000500160	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.309	-	-	-	no_errors
ENSG00000246304	0	genome.wustl.edu	37	5	138729667	138729667	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	138729667	138729667	C	G	SNP	ENSG00000246304	ENST00000499862	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors
EPHA6	285220	genome.wustl.edu	37	3	97356897	97356897	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	97356897	97356897	G	T	SNP	EPHA6	NM_001080448	human	genbank	57_37b	+1	provisional	missense	c.2755	p.D919Y	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,superfamily_Growth factor receptor domain,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
GALNT5	11227	genome.wustl.edu	37	2	158152231	158152231	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	158152231	158152231	C	A	SNP	GALNT5	NM_014568	human	genbank	57_37b	+1	provisional	missense	c.1798	p.P600T	1.000	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2	superfamily_Nucleotide-diphospho-sugar transferases,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin	-	no_errors
HIVEP3	59269	genome.wustl.edu	37	1	41976178	41976178	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	41976178	41976178	C	T	SNP	HIVEP3	NM_024503	human	genbank	57_37b	-1	validated	missense	c.7165	p.G2389R	0.893	NULL	PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
IGSF9B	22997	genome.wustl.edu	37	11	133807856	133807856	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	133807856	133807856	G	T	SNP	IGSF9B	NM_014987	human	genbank	57_37b	-1	validated	missense	c.410	p.A137D	1.000	superfamily_SSF48726	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_fn3	-	no_errors
IHH	3549	genome.wustl.edu	37	2	219920037	219920037	+	Silent	SNP	A	A	G	rs394452	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	219920037	219920037	A	G	SNP	IHH	NM_002181	human	genbank	57_37b	-1	reviewed	silent	c.1128	p.T376	0.461	HMMPfam_Hint	HMMPfam_HH_signal,superfamily_Hedgehog/DD-peptidase,HMMPfam_Hint,HMMSmart_SM00306,superfamily_Hedgehog/intein (Hint) domain,HMMSmart_SM00305	-	
ITGA8	8516	genome.wustl.edu	37	10	15573048	15573048	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	15573048	15573048	C	A	SNP	ITGA8	NM_003638	human	genbank	57_37b	-1	provisional	splice_site	c.2982+1	e28+1	0.996	-	-	-	no_errors
ITGAD	3681	genome.wustl.edu	37	16	31425771	31425771	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31425771	31425771	G	C	SNP	ITGAD	NM_005353	human	genbank	57_37b	+1	validated	splice_site	c.1997-1	e17-1	0.961	-	-	-	no_errors
ITGAX	3687	genome.wustl.edu	37	16	31373963	31373963	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31373963	31373963	G	T	SNP	ITGAX	NM_000887	human	genbank	57_37b	+1	reviewed	silent	c.1248	p.G416	0.154	superfamily_SSF69318,HMMSmart_Int_alpha	superfamily_SSF69318,HMMSmart_Int_alpha,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
KIAA0907	22889	genome.wustl.edu	37	1	155903461	155903461	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155903461	155903461	T	C	SNP	KIAA0907	NM_014949	human	genbank	57_37b	-1	predicted	missense	c.218	p.K73R	1.000	NULL	superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
LAMA5	3911	genome.wustl.edu	37	20	60913127	60913127	+	Silent	SNP	A	A	G	rs8124907	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60913127	60913127	A	G	SNP	LAMA5	NM_005560	human	genbank	57_37b	-1	reviewed	silent	c.1836	p.A612	0.001	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_LAM_1	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	
LAMB4	22798	genome.wustl.edu	37	7	107746436	107746436	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	107746436	107746436	C	G	SNP	LAMB4	NM_007356	human	genbank	57_37b	-1	validated	missense	c.696	p.K232N	0.970	HMMSmart_SM00136,HMMPfam_Laminin_N	HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2	-	no_errors
LILRA5	353514	genome.wustl.edu	37	19	54822884	54822884	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54822884	54822884	A	G	SNP	LILRA5	NM_021250	human	genbank	57_37b	-1	reviewed	missense	c.512	p.F171S	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
LOC283116	283116	genome.wustl.edu	37	11	49053370	49053370	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	49053370	49053370	G	A	SNP	LOC283116	XM_208043	human	genbank	57_37b	+1	model	missense	c.219	p.M73I	0.855	superfamily_SSF57850	PatternScan_ZF_RING_1,superfamily_SSF57850,HMMPfam_zf-C3HC4,HMMSmart_RING,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_SPRY	-	no_errors
LOC401433	401433	genome.wustl.edu	37	7	151074354	151074354	+	RNA	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151074354	151074354	A	G	SNP	LOC401433	XR_017935	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.369	-	-	-	no_errors
LOC654780	654780	genome.wustl.edu	37	16	84228613	84228613	+	RNA	DEL	T	T	-	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84228613	84228613	T	-	DEL	LOC654780	XR_040612	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.005	-	-	(deletion:rna[84228363,84228762])	no_errors
LRP2	4036	genome.wustl.edu	37	2	170011097	170011097	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170011097	170011097	C	G	SNP	LRP2	NM_004525	human	genbank	57_37b	-1	reviewed	missense	c.12168	p.L4056F	0.997	superfamily_SSF63825	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_2,superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1	-	no_errors
LRP2	4036	genome.wustl.edu	37	2	170063488	170063488	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170063488	170063488	C	T	SNP	LRP2	NM_004525	human	genbank	57_37b	-1	reviewed	missense	c.6742	p.V2248I	0.022	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
METTL14	57721	genome.wustl.edu	37	4	119609080	119609080	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	119609080	119609080	G	C	SNP	METTL14	NM_020961	human	genbank	57_37b	+1	provisional	missense	c.69	p.L23F	1.000	NULL	HMMPfam_MT-A70	-	no_errors
MUC5B	727897	genome.wustl.edu	37	11	1264014	1264014	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1264014	1264014	G	C	SNP	MUC5B	NM_002458	human	genbank	57_37b	+1	validated	silent	c.5913	p.L1971	0.000	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1	-	no_errors
NECAB1	64168	genome.wustl.edu	37	8	91937819	91937819	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	91937819	91937819	G	T	SNP	NECAB1	NM_022351	human	genbank	57_37b	+1	validated	missense	c.551	p.S184I	0.997	NULL	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Dimeric alpha beta barrel,HMMPfam_ABM	-	no_errors
NECAP2	55707	genome.wustl.edu	37	1	16770220	16770220	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16770220	16770220	G	T	SNP	NECAP2	NM_001145277	human	genbank	57_37b	+1	reviewed	missense	c.186	p.R62S	0.990	HMMPfam_DUF1681	HMMPfam_DUF1681	-	no_errors
NEDD9	4739	genome.wustl.edu	37	6	11190312	11190312	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	11190312	11190312	T	A	SNP	NEDD9	NM_001142393	human	genbank	57_37b	-1	validated	missense	c.1790	p.Q597L	0.133	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_Serine_rich	-	no_errors
NUP88	4927	genome.wustl.edu	37	17	5289552	5289552	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	5289552	5289552	C	G	SNP	NUP88	NM_002532	human	genbank	57_37b	-1	reviewed	missense	c.2200	p.D734H	1.000	HMMPfam_Nup88	HMMPfam_Nup88	-	no_errors
OR4A5	81318	genome.wustl.edu	37	11	51411671	51411671	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	51411671	51411671	G	C	SNP	OR4A5	NM_001005272	human	genbank	57_37b	-1	validated	missense	c.725	p.T242S	0.001	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,PatternScan_LECTIN_LEGUME_ALPHA,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR5L2	26338	genome.wustl.edu	37	11	55594925	55594925	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55594925	55594925	T	G	SNP	OR5L2	NM_001004739	human	genbank	57_37b	+1	provisional	missense	c.231	p.I77M	0.044	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OXGR1	27199	genome.wustl.edu	37	13	97639673	97639673	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	97639673	97639673	T	C	SNP	OXGR1	NM_080818	human	genbank	57_37b	-1	reviewed	missense	c.341	p.H114R	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
PARP8	79668	genome.wustl.edu	37	5	50055554	50055554	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	50055554	50055554	A	T	SNP	PARP8	NM_024615	human	genbank	57_37b	+1	provisional	nonsense	c.262	p.R88*	1.000	NULL	superfamily_ADP-ribosylation,HMMPfam_PARP	-	no_errors
PDE2A	5138	genome.wustl.edu	37	11	72300269	72300269	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	72300269	72300269	C	G	SNP	PDE2A	NM_002599	human	genbank	57_37b	-1	validated	missense	c.889	p.G297R	1.000	superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065	superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
PEAR1	375033	genome.wustl.edu	37	1	156883814	156883814	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156883814	156883814	T	A	SNP	PEAR1	NM_001080471	human	genbank	57_37b	+1	provisional	missense	c.2884	p.W962R	0.084	NULL	HMMPfam_EMI,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_Grow_fac_recept	-	no_errors
PHKB	5257	genome.wustl.edu	37	16	47531346	47531346	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	47531346	47531346	C	T	SNP	PHKB	NM_000293	human	genbank	57_37b	+1	reviewed	missense	c.113	p.P38L	0.992	HMMPfam_PHK_AB	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases	-	no_errors
PLS1	5357	genome.wustl.edu	37	3	142403210	142403210	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	142403210	142403210	C	T	SNP	PLS1	NM_001145319	human	genbank	57_37b	+1	reviewed	silent	c.861	p.T287	0.905	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2	-	no_errors
PRR23B	0	genome.wustl.edu	37	3	138738845	138738845	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	138738845	138738845	C	T	SNP	PRR23B	NM_001013650	human	genbank	57_37b	-1	validated	missense	c.659	p.R220H	0.000	HMMPfam_DUF2476	HMMPfam_DUF2476	-	no_errors
PSMA5	5686	genome.wustl.edu	37	1	109952632	109952632	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	109952632	109952632	A	C	SNP	PSMA5	NM_002790	human	genbank	57_37b	-1	reviewed	missense	c.566	p.M189R	1.000	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome_A_N,PatternScan_PROTEASOME_A,HMMPfam_Proteasome	-	no_errors
PTGIS	5740	genome.wustl.edu	37	20	48124493	48124493	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	48124493	48124493	T	A	SNP	PTGIS	NM_000961	human	genbank	57_37b	-1	reviewed	missense	c.1467	p.E489D	0.056	superfamily_Cytochrome_P450,HMMPfam_p450	PatternScan_CYTOCHROME_P450,superfamily_Cytochrome_P450,HMMPfam_p450	-	no_errors
PTPN14	5784	genome.wustl.edu	37	1	214557148	214557148	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	214557148	214557148	G	C	SNP	PTPN14	NM_005401	human	genbank	57_37b	-1	reviewed	missense	c.2050	p.H684D	0.989	NULL	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
RERE	473	genome.wustl.edu	37	1	8421203	8421203	+	Silent	SNP	T	C	C	rs13596	byCluster;by2Hit2Allele;by1000genomes	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	8421203	8421203	T	C	SNP	RERE	NM_001042681	human	genbank	57_37b	-1	reviewed	silent	c.2364	p.P788	0.002	HMMPfam_Atrophin-1	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,HMMSmart_SM00401,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_GATA,HMMPfam_Atrophin-1	-	
RIMBP2	23504	genome.wustl.edu	37	12	130927134	130927134	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	130927134	130927134	G	A	SNP	RIMBP2	NM_015347	human	genbank	57_37b	-1	validated	missense	c.712	p.R238W	0.780	superfamily_SH3-domain	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	-	no_errors
RSPO2	340419	genome.wustl.edu	37	8	109001415	109001415	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	109001415	109001415	C	A	SNP	RSPO2	NM_178565	human	genbank	57_37b	-1	validated	missense	c.152	p.G51V	1.000	superfamily_Growth factor receptor domain,HMMSmart_SM00261	superfamily_Growth factor receptor domain,HMMSmart_SM00261,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209	-	no_errors
RTN4RL2	349667	genome.wustl.edu	37	11	57235332	57235332	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	57235332	57235332	C	T	SNP	RTN4RL2	NM_178570	human	genbank	57_37b	+1	provisional	silent	c.282	p.L94	1.000	superfamily_SSF52058	superfamily_SSF52058,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT	-	no_errors
SGK269	79834	genome.wustl.edu	37	15	77406585	77406585	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	77406585	77406585	G	A	SNP	SGK269	NM_024776	human	genbank	57_37b	-1	validated	silent	c.5154	p.S1718	1.000	NULL	PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
SIPA1L2	57568	genome.wustl.edu	37	1	232650538	232650538	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	232650538	232650538	T	C	SNP	SIPA1L2	NM_020808	human	genbank	57_37b	-1	validated	missense	c.548	p.N183S	1.000	NULL	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
SLC45A3	85414	genome.wustl.edu	37	1	205628387	205628387	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205628387	205628387	C	G	SNP	SLC45A3	NM_033102	human	genbank	57_37b	-1	validated	missense	c.1637	p.S546T	0.826	NULL	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	-	no_errors
SPEG	10290	genome.wustl.edu	37	2	220333886	220333886	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220333886	220333886	T	A	SNP	SPEG	NM_005876	human	genbank	57_37b	+1	validated	missense	c.3500	p.L1167Q	1.000	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00219	-	no_errors
SPG20	23111	genome.wustl.edu	37	13	36886528	36886528	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	36886528	36886528	A	G	SNP	SPG20	NM_001142294	human	genbank	57_37b	-1	reviewed	missense	c.1570	p.S524P	1.000	NULL	HMMSmart_MIT,HMMPfam_MIT	-	no_errors
SSPO	23145	genome.wustl.edu	37	7	149500337	149500337	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	149500337	149500337	T	G	SNP	SSPO	ENST00000378016	human	ensembl	57_37b	+1	known	nonsense	c.7863	p.Y2621*	0.108	superfamily_Serine proterase inhibitors	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_VWC,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_BPTI_KUNITZ_1,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_EGF_1,PatternScan_VWFC_1	-	no_errors
SYT17	51760	genome.wustl.edu	37	16	19278387	19278387	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	19278387	19278387	G	T	SNP	SYT17	NM_016524	human	genbank	57_37b	+1	validated	nonsense	c.1414	p.E472*	1.000	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
TMUB2	79089	genome.wustl.edu	37	17	42265092	42265092	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42265092	42265092	C	G	SNP	TMUB2	NM_001076674	human	genbank	57_37b	+1	validated	missense	c.16	p.L6V	0.999	NULL	superfamily_Ubiquitin-like,HMMSmart_SM00213,HMMPfam_ubiquitin	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578190	7578190	T	C	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.659	p.Y220C	0.998	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
UAP1	6675	genome.wustl.edu	37	1	162557384	162557384	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	162557384	162557384	C	G	SNP	UAP1	NM_003115	human	genbank	57_37b	+1	validated	missense	c.954	p.D318E	0.996	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_UDPGP	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_UDPGP	-	no_errors
UGT2B4	7363	genome.wustl.edu	37	4	70361460	70361460	+	Missense_Mutation	SNP	C	C	G	rs41299974	byCluster;by1000genomes	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	70361460	70361460	C	G	SNP	UGT2B4	NM_021139	human	genbank	57_37b	-1	validated	missense	c.120	p.K40N	0.047	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	
USP36	57602	genome.wustl.edu	37	17	76803593	76803593	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	76803593	76803593	C	T	SNP	USP36	NM_025090	human	genbank	57_37b	-1	validated	silent	c.1533	p.S511	0.012	NULL	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_IG_MHC	-	no_errors
ZDHHC8P1	0	genome.wustl.edu	37	22	23742018	23742018	+	RNA	SNP	A	A	G	rs13054421	byCluster;by1000genomes	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	23742018	23742018	A	G	SNP	ZDHHC8P1	NR_003950	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.792	-	-	-	
ZNF169	169841	genome.wustl.edu	37	9	97063282	97063282	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	97063282	97063282	C	A	SNP	ZNF169	NM_194320	human	genbank	57_37b	+1	validated	missense	c.1442	p.T481K	0.687	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF37A	7587	genome.wustl.edu	37	10	38407207	38407207	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	38407207	38407207	A	G	SNP	ZNF37A	NM_001007094	human	genbank	57_37b	+1	validated	silent	c.1128	p.T376	0.975	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZSWIM3	140831	genome.wustl.edu	37	20	44506036	44506036	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	44506036	44506036	A	G	SNP	ZSWIM3	NM_080752	human	genbank	57_37b	+1	validated	missense	c.839	p.K280R	1.000	HMMPfam_MULE	HMMPfam_MULE,HMMPfam_SWIM,HMMSmart_ZnF_PMZ	-	no_errors
