Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
APC	324	genome.wustl.edu	37	5	112177283	112177283	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	112177283	112177283	G	A	SNP	APC	NM_000038	human	genbank	57_37b	+1	reviewed	missense	c.5992	p.E1998K	1.000	NULL	superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm,HMMPfam_APC_15aa,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_APC_basic,HMMPfam_EB1_binding	-	no_errors
ARHGAP26	23092	genome.wustl.edu	37	5	142150475	142150475	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	142150475	142150475	T	C	SNP	ARHGAP26	NM_015071	human	genbank	57_37b	+1	reviewed	missense	c.149	p.L50P	1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,PatternScan_IG_MHC	-	no_errors
C2CD4C	126567	genome.wustl.edu	37	19	407900	407900	+	Silent	SNP	A	A	G	rs10411998	byCluster;by1000genomes	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	407900	407900	A	G	SNP	C2CD4C	NM_001136263	human	genbank	57_37b	-1	validated	silent	c.462	p.A154	0.999	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	
CARD16	114769	genome.wustl.edu	37	11	104915136	104915136	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	104915136	104915136	G	A	SNP	CARD16	NM_001017534	human	genbank	57_37b	-1	validated	missense	c.257	p.T86M	0.000	HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD	HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD	-	no_errors
ENSG00000246026	0	genome.wustl.edu	37	18	43668334	43668334	+	RNA	SNP	A	A	T	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	43668334	43668334	A	T	SNP	ENSG00000246026	ENST00000501936	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.569	-	-	-	no_errors
HIATL2	84278	genome.wustl.edu	37	9	99711835	99711835	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	99711835	99711835	A	T	SNP	HIATL2	ENST00000375223	human	ensembl	57_37b	-1	known	splice_site	c.395+2	e4+2	1.000	-	-	-	no_errors
KDM4A	9682	genome.wustl.edu	37	1	44137307	44137307	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	44137307	44137307	C	T	SNP	KDM4A	NM_014663	human	genbank	57_37b	+1	reviewed	missense	c.1495	p.L499F	0.950	NULL	HMMSmart_SM00545,HMMPfam_JmjN,HMMSmart_SM00558,HMMPfam_JmjC,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT	-	no_errors
LOC100130803	0	genome.wustl.edu	37	5	29600826	29600826	+	Missense_Mutation	SNP	G	G	A	rs71623705	byCluster;by1000genomes	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	29600826	29600826	G	A	SNP	LOC100130803	XM_001722411	human	genbank	57_37b	+1	model	missense	c.113	p.R38H	0.987	superfamily_Ubiquitin-like	superfamily_Ubiquitin-like	-	
LOC100131582	0	genome.wustl.edu	37	16	706067	706067	+	RNA	SNP	G	G	A	rs9932866	byCluster;byHapMap;by1000genomes	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	706067	706067	G	A	SNP	LOC100131582	XR_078511	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.000	-	-	-	
LOC100289074	0	genome.wustl.edu	37	17	81083247	81083247	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	81083247	81083247	G	A	SNP	LOC100289074	XM_002343591	human	genbank	57_37b	+1	model	missense	c.1144	p.D382N	0.024	NULL	NULL	-	no_errors
MAGIX	79917	genome.wustl.edu	37	X	49021218	49021218	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49021218	49021218	A	T	SNP	MAGIX	NM_024859	human	genbank	57_37b	+1	validated	silent	c.297	p.T99	0.000	superfamily_PDZ domain-like	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
MIR486	0	genome.wustl.edu	37	8	41517976	41517976	+	RNA	SNP	G	G	T	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41517976	41517976	G	T	SNP	MIR486	ENST00000408108	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
PDCD6IP	10015	genome.wustl.edu	37	3	33855109	33855109	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	33855109	33855109	C	T	SNP	PDCD6IP	NM_013374	human	genbank	57_37b	+1	validated	missense	c.323	p.S108F	1.000	HMMPfam_BRO1	HMMPfam_BRO1	-	no_errors
PHACTR3	116154	genome.wustl.edu	37	20	58322833	58322833	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	58322833	58322833	G	A	SNP	PHACTR3	NM_080672	human	genbank	57_37b	+1	reviewed	missense	c.301	p.G101S	0.037	HMMSmart_SM00707	HMMSmart_SM00707,HMMPfam_RPEL	-	no_errors
PRIC285	85441	genome.wustl.edu	37	20	62195087	62195087	+	Silent	SNP	A	A	G	rs310630	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62195087	62195087	A	G	SNP	PRIC285	NM_001037335	human	genbank	57_37b	-1	reviewed	silent	c.5088	p.S1696	0.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_RNB,PatternScan_RIBONUCLEASE_II	-	
PRKD2	25865	genome.wustl.edu	37	19	47204110	47204110	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47204110	47204110	T	C	SNP	PRKD2	NM_001079880	human	genbank	57_37b	-1	reviewed	missense	c.1067	p.E356G	0.854	NULL	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
RGPD3	653489	genome.wustl.edu	37	2	107041128	107041128	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	107041128	107041128	G	A	SNP	RGPD3	NM_001144013	human	genbank	57_37b	-1	provisional	silent	c.3295	p.L1099	1.000	superfamily_SSF50729,HMMPfam_Ran_BP1	superfamily_SSF48452,HMMPfam_TPR_1,superfamily_SSF50729,HMMPfam_Ran_BP1,HMMSmart_RanBD,HMMPfam_GRIP,HMMSmart_Grip	-	no_errors
SLC1A6	6511	genome.wustl.edu	37	19	15063812	15063812	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15063812	15063812	A	G	SNP	SLC1A6	NM_005071	human	genbank	57_37b	-1	provisional	missense	c.1427	p.M476T	1.000	HMMPfam_SDF	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2	-	no_errors
SYNE2	23224	genome.wustl.edu	37	14	64557671	64557671	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	64557671	64557671	A	G	SNP	SYNE2	NM_182914	human	genbank	57_37b	+1	reviewed	missense	c.11881	p.M3961V	0.003	NULL	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH	-	no_errors
ZNF565	147929	genome.wustl.edu	37	19	36673496	36673496	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36673496	36673496	G	A	SNP	ZNF565	NM_001042474	human	genbank	57_37b	-1	validated	missense	c.1372	p.R458C	0.007	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
