Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AGGF1	55109	genome.wustl.edu	37	5	76349814	76349814	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	76349814	76349814	G	A	SNP	AGGF1	NM_018046	human	genbank	57_37b	+1	validated	missense	c.1492	p.V498I	0.003	superfamily_SMAD/FHA domain,HMMPfam_FHA	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors
ATG9A	79065	genome.wustl.edu	37	2	220087161	220087161	+	Missense_Mutation	SNP	A	G	G	rs73993548	byCluster;by1000genomes	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220087161	220087161	A	G	SNP	ATG9A	ENST00000446716	human	ensembl	57_37b	-1	known	missense	c.106	p.Y36H	0.995	NULL	NULL	-	
BAHCC1	57597	genome.wustl.edu	37	17	79422327	79422327	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79422327	79422327	G	C	SNP	BAHCC1	ENST00000436173	human	ensembl	57_37b	+1	known	missense	c.4480	p.E1494Q	0.986	NULL	HMMPfam_BAH,HMMSmart_SM00439	-	no_errors
C19orf40	91442	genome.wustl.edu	37	19	33464469	33464469	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	33464469	33464469	G	A	SNP	C19orf40	NM_152266	human	genbank	57_37b	+1	validated	splice_site	c.243+1	e2+1	1.000	-	-	-	no_errors
C19orf51	352909	genome.wustl.edu	37	19	55672470	55672470	+	Missense_Mutation	SNP	T	T	C	rs2365725	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55672470	55672470	T	C	SNP	C19orf51	NM_178837	human	genbank	57_37b	-1	validated	missense	c.1016	p.E339G	0.566	NULL	NULL	-	
CLEC4E	26253	genome.wustl.edu	37	12	8692538	8692539	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8692538	8692539	CT	-	DEL	CLEC4E	NM_014358	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.43_42	p.G15fs	0.000:0.000	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	(deletion:cds_exon[8692451,8692543])	no_errors
CLEC4E	26253	genome.wustl.edu	37	12	8692543	8692543	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8692543	8692543	T	A	SNP	CLEC4E	NM_014358	human	genbank	57_37b	-1	reviewed	missense	c.38	p.E13V	0.221	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors
COL18A1	80781	genome.wustl.edu	37	21	46888236	46888236	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46888236	46888236	G	A	SNP	COL18A1	NM_130444	human	genbank	57_37b	+1	reviewed	missense	c.1432	p.D478N	0.975	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210	HMMPfam_DUF959,HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_C-type lectin-like,HMMPfam_Endostatin	-	no_errors
CSGALNACT1	55790	genome.wustl.edu	37	8	19263493	19263493	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	19263493	19263493	C	T	SNP	CSGALNACT1	NM_001130518	human	genbank	57_37b	-1	validated	missense	c.1397	p.R466Q	1.000	HMMPfam_CHGN,superfamily_SSF53448	HMMPfam_CHGN,superfamily_SSF53448	-	no_errors
CSPG4	1464	genome.wustl.edu	37	15	75982872	75982872	+	Silent	SNP	G	G	A	rs61754538	byCluster;by1000genomes	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	75982872	75982872	G	A	SNP	CSPG4	NM_001897	human	genbank	57_37b	-1	reviewed	silent	c.534	p.R178	0.984	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	
CTSL2	1515	genome.wustl.edu	37	9	99798887	99798887	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	99798887	99798887	C	G	SNP	CTSL2	NM_001333	human	genbank	57_37b	-1	reviewed	missense	c.539	p.G180A	1.000	superfamily_SSF54001,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1	superfamily_SSF54001,HMMPfam_Inhibitor_I29,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN	-	no_errors
DEPDC7	91614	genome.wustl.edu	37	11	33047294	33047294	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	33047294	33047294	C	T	SNP	DEPDC7	NM_001077242	human	genbank	57_37b	+1	validated	nonsense	c.163	p.R55*	0.980	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049"	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049"	-	no_errors
DTNB	1838	genome.wustl.edu	37	2	25861892	25861892	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	25861892	25861892	G	A	SNP	DTNB	NM_021907	human	genbank	57_37b	-1	reviewed	nonsense	c.139	p.R47*	1.000	superfamily_EF-hand,HMMPfam_efhand_1	superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1	-	no_errors
ENSG00000222830	0	genome.wustl.edu	37	15	78209131	78209131	+	RNA	SNP	T	T	C	rs7161792	byCluster;by1000genomes	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78209131	78209131	T	C	SNP	ENSG00000222830	ENST00000410898	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.002	-	-	-	
ENSG00000244937	0	genome.wustl.edu	37	15	83361080	83361080	+	RNA	SNP	C	C	A	rs17158366	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	83361080	83361080	C	A	SNP	ENSG00000244937	ENST00000499050	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.975	-	-	-	
ENSG00000245549	0	genome.wustl.edu	37	1	16950807	16950807	+	RNA	SNP	C	C	T	rs11590427	byCluster;byHapMap	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16950807	16950807	C	T	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.483	-	-	-	
EPHB2	2048	genome.wustl.edu	37	1	23222000	23222000	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	23222000	23222000	C	T	SNP	EPHB2	NM_004442	human	genbank	57_37b	+1	reviewed	missense	c.1627	p.L543F	1.000	NULL	superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_1	-	no_errors
FAM71F2	346653	genome.wustl.edu	37	7	128317709	128317709	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128317709	128317709	C	T	SNP	FAM71F2	NM_001012454	human	genbank	57_37b	+1	validated	silent	c.457	p.L153	1.000	NULL	NULL	-	no_errors
FLJ46321	389763	genome.wustl.edu	37	9	84605378	84605378	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	84605378	84605378	G	T	SNP	FLJ46321	NM_001001670	human	genbank	57_37b	+1	validated	missense	c.279	p.R93S	0.003	NULL	NULL	-	no_errors
GLIS2	84662	genome.wustl.edu	37	16	4387424	4387424	+	Missense_Mutation	SNP	A	G	G	rs8057701	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4387424	4387424	A	G	SNP	GLIS2	NM_032575	human	genbank	57_37b	+1	reviewed	missense	c.1474	p.T492A	1.000	NULL	superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	
GPR125	166647	genome.wustl.edu	37	4	22390523	22390523	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	22390523	22390523	G	A	SNP	GPR125	NM_145290	human	genbank	57_37b	-1	validated	missense	c.2771	p.A924V	1.000	HMMPfam_7tm_2	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_Hormone receptor domain (HRM Pfam 02793),HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
GPR179	440435	genome.wustl.edu	37	17	36491083	36491083	+	Missense_Mutation	SNP	C	T	T	rs4550493	by1000genomes	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36491083	36491083	C	T	SNP	GPR179	NM_001004334	human	genbank	57_37b	-1	validated	missense	c.1478	p.R493H	0.924	HMMPfam_7tm_3	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMSmart_EGF,HMMPfam_7tm_3	-	
IP6K2	51447	genome.wustl.edu	37	3	48732632	48732633	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48732632	48732633	-	C	INS	IP6K2	NM_001005909	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.93_92	p.C31fs	0.631:1.000	superfamily_SAICAR synthase-like	superfamily_SAICAR synthase-like,HMMPfam_IPK	-	no_errors
KRT28	162605	genome.wustl.edu	37	17	38954517	38954517	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38954517	38954517	C	G	SNP	KRT28	NM_181535	human	genbank	57_37b	-1	reviewed	missense	c.660	p.E220D	0.999	HMMPfam_Filament	HMMPfam_Filament	-	no_errors
LOC100132598	0	genome.wustl.edu	37	13	19308401	19308401	+	Missense_Mutation	SNP	A	A	G	rs4463943	byCluster	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	19308401	19308401	A	G	SNP	LOC100132598	XM_001714168	human	genbank	57_37b	+1	model	missense	c.512	p.Y171C	0.453	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	
LOC100288508	0	genome.wustl.edu	37	21	47546385	47546386	+	Frame_Shift_Ins	INS	-	-	GGCCC	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47546385	47546386	-	GGCCC	INS	LOC100288508	XM_002343757	human	genbank	57_37b	-1	model	frame_shift_ins	c.560_559	p.Q187fs	0.000:0.000	NULL	NULL	-	no_errors
LOC440300	440300	genome.wustl.edu	37	15	84859462	84859462	+	RNA	SNP	A	A	G	rs76773663	byFrequency	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	84859462	84859462	A	G	SNP	LOC440300	XR_078504	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.003	-	-	-	
MAP2K4	6416	genome.wustl.edu	37	17	12011227	12011228	+	Splice_Site	INS	-	-	T	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	12011227	12011228	-	T	INS	MAP2K4	NM_003010	human	genbank	57_37b	+1	reviewed	splice_site_ins	c.633+1_633+1	e5+1	1.000:1.000	-	-	-	no_errors
MIA3	375056	genome.wustl.edu	37	1	222801435	222801435	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	222801435	222801435	G	A	SNP	MIA3	NM_198551	human	genbank	57_37b	+1	validated	silent	c.873	p.E291	0.929	NULL	superfamily_SH3-domain,HMMPfam_SH3_2	-	no_errors
MS4A4E	643680	genome.wustl.edu	37	11	59980598	59980598	+	Missense_Mutation	SNP	C	C	T	rs7929057	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	59980598	59980598	C	T	SNP	MS4A4E	XM_931886	human	genbank	57_37b	-1	model	missense	c.407	p.G136D	0.001	HMMPfam_CD20	HMMPfam_CD20	-	
MSLNL	0	genome.wustl.edu	37	16	830787	830788	+	Frame_Shift_Ins	INS	-	-	CT	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	830787	830788	-	CT	INS	MSLNL	NM_001025190	human	genbank	57_37b	-1	provisional	frame_shift_ins	c.214_213	p.R71fs	0.244:0.795	NULL	HMMPfam_Mesothelin	-	no_errors
MYST4	23522	genome.wustl.edu	37	10	76739051	76739051	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	76739051	76739051	G	A	SNP	MYST4	NM_012330	human	genbank	57_37b	+1	validated	missense	c.2185	p.E729K	1.000	superfamily_Acyl-CoA N-acyltransferases (Nat)	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_MOZ_SAS"	-	no_errors
NCRNA00105	80161	genome.wustl.edu	37	X	1531852	1531853	+	RNA	DEL	AG	AG	-	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	1531852	1531853	AG	-	DEL	NCRNA00105	NR_026710	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000:0.000	-	-	(deletion:rna[1531636,1532479])	no_errors
PARP14	54625	genome.wustl.edu	37	3	122399872	122399872	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122399872	122399872	C	T	SNP	PARP14	NM_017554	human	genbank	57_37b	+1	validated	missense	c.142	p.P48S	0.104	NULL	superfamily_Macro domain-like,HMMSmart_SM00506,HMMPfam_Macro,superfamily_ADP-ribosylation,HMMPfam_PARP	-	no_errors
PDGFRB	5159	genome.wustl.edu	37	5	149510159	149510159	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	149510159	149510159	C	T	SNP	PDGFRB	NM_002609	human	genbank	57_37b	-1	reviewed	missense	c.1310	p.R437H	0.850	NULL	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	
PPP1R14A	94274	genome.wustl.edu	37	19	38743550	38743554	+	Frame_Shift_Del	DEL	CTCTC	CTCTC	-	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	CTCTC	CTCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38743550	38743554	CTCTC	-	DEL	PPP1R14A	NM_033256	human	genbank	57_37b	-1	provisional	frame_shift_del	c.266_262	p.E88fs	0.995:0.995:0.993:1.000:1.000	HMMPfam_PP1_inhibitor,superfamily_Myosin phosphatase inhibitor 17kDa protein CPI-17	HMMPfam_PP1_inhibitor,superfamily_Myosin phosphatase inhibitor 17kDa protein CPI-17	(deletion:cds_exon[38743534,38743614])	no_errors
PSEN2	5664	genome.wustl.edu	37	1	227069706	227069706	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	227069706	227069706	A	G	SNP	PSEN2	NM_000447	human	genbank	57_37b	+1	reviewed	missense	c.98	p.E33G	0.998	NULL	HMMPfam_Presenilin,HMMSmart_SM00730	-	no_errors
PTPN22	26191	genome.wustl.edu	37	1	114397570	114397570	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	114397570	114397570	A	C	SNP	PTPN22	NM_015967	human	genbank	57_37b	-1	reviewed	missense	c.642	p.C214W	0.978	superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase	superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
RNF135	84282	genome.wustl.edu	37	17	29325839	29325839	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	29325839	29325839	C	T	SNP	RNF135	NM_032322	human	genbank	57_37b	+1	reviewed	missense	c.929	p.S310F	0.997	HMMPfam_SPRY	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_PRY,HMMPfam_SPRY	-	no_errors
RTL1	388015	genome.wustl.edu	37	14	101348922	101348922	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	101348922	101348922	A	G	SNP	RTL1	NM_001134888	human	genbank	57_37b	-1	reviewed	missense	c.2204	p.V735A	0.956	superfamily_DNA/RNA polymerases	HMMPfam_Retrotrans_gag,superfamily_Acid proteases,superfamily_DNA/RNA polymerases	-	no_errors
SEC24A	10802	genome.wustl.edu	37	5	134059307	134059307	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	134059307	134059307	C	T	SNP	SEC24A	NM_021982	human	genbank	57_37b	+1	validated	silent	c.3114	p.F1038	0.973	superfamily_C-terminal gelsolin-like domain of Sec23/24,HMMPfam_Gelsolin	superfamily_beta-sandwich domain of Sec23/24,HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,superfamily_vWA-like,HMMPfam_Sec23_BS,superfamily_Helical domain of Sec23/24,HMMPfam_Sec23_helical,superfamily_C-terminal gelsolin-like domain of Sec23/24,HMMPfam_Gelsolin	-	no_errors
SH3PXD2B	285590	genome.wustl.edu	37	5	171766429	171766429	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	171766429	171766429	A	C	SNP	SH3PXD2B	NM_001017995	human	genbank	57_37b	-1	validated	missense	c.1680	p.I560M	0.000	NULL	superfamily_PX,HMMPfam_PX,HMMSmart_PX,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3	-	no_errors
SI	6476	genome.wustl.edu	37	3	164716394	164716394	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	164716394	164716394	G	A	SNP	SI	NM_001041	human	genbank	57_37b	-1	validated	nonsense	c.4474	p.R1492*	0.728	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases	HMMSmart_SM00018,superfamily_Trefoil,HMMPfam_Trefoil,PatternScan_P_TREFOIL,HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2	-	no_errors
SMARCA2	6595	genome.wustl.edu	37	9	2116045	2116045	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	2116045	2116045	A	G	SNP	SMARCA2	NM_003070	human	genbank	57_37b	+1	reviewed	missense	c.3680	p.N1227S	1.000	NULL	HMMPfam_QLQ,HMMPfam_HSA,HMMSmart_SM00573,HMMPfam_BRK,HMMSmart_SM00592,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
SVEP1	79987	genome.wustl.edu	37	9	113169979	113169979	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	113169979	113169979	A	G	SNP	SVEP1	NM_153366	human	genbank	57_37b	-1	validated	missense	c.7901	p.F2634S	0.087	NULL	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Growth factor receptor domain,PatternScan_EGF_2,HMMPfam_GCC2_GCC3,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_HYR,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Pentaxin,HMMPfam_EGF_CA,HMMPfam_EGF_2	-	no_errors
SYNE2	23224	genome.wustl.edu	37	14	64636985	64636985	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	64636985	64636985	G	A	SNP	SYNE2	NM_182914	human	genbank	57_37b	+1	reviewed	silent	c.17040	p.R5680	0.150	superfamily_Spectrin,HMMSmart_SPEC	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH	-	no_errors
TARS2	80222	genome.wustl.edu	37	1	150479529	150479529	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150479529	150479529	G	A	SNP	TARS2	NM_025150	human	genbank	57_37b	+1	provisional	missense	c.2146	p.E716K	0.997	NULL	HMMPfam_TGS,superfamily_TGS-like,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA_SAD,superfamily_SSF55681,HMMPfam_tRNA-synt_2b,superfamily_Anticodon_bd,HMMPfam_HGTP_anticodon	-	no_errors
TBK1	29110	genome.wustl.edu	37	12	64875760	64875760	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	64875760	64875760	A	G	SNP	TBK1	NM_013254	human	genbank	57_37b	+1	reviewed	silent	c.951	p.Q317	1.000	NULL	HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
TMC5	79838	genome.wustl.edu	37	16	19451502	19451502	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	19451502	19451502	C	G	SNP	TMC5	NM_001105248	human	genbank	57_37b	+1	validated	missense	c.142	p.P48A	0.001	NULL	HMMPfam_TMC	-	no_errors
TNFRSF18	8784	genome.wustl.edu	37	1	1139202	1139202	+	Silent	SNP	T	C	C	rs2298213	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1139202	1139202	T	C	SNP	TNFRSF18	NM_148901	human	genbank	57_37b	-1	reviewed	silent	c.537	p.P179	0.000	NULL	NULL	-	
TP53	7157	genome.wustl.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578190	7578190	T	G	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.659	p.Y220S	0.998	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TSPAN1	10103	genome.wustl.edu	37	1	46650495	46650495	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	46650495	46650495	C	G	SNP	TSPAN1	NM_005727	human	genbank	57_37b	+1	reviewed	missense	c.378	p.I126M	0.997	HMMPfam_Tetraspannin	HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin	-	no_errors
UPK3A	7380	genome.wustl.edu	37	22	45681971	45681971	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	45681971	45681971	G	A	SNP	UPK3A	NM_006953	human	genbank	57_37b	+1	reviewed	missense	c.202	p.D68N	0.004	NULL	NULL	-	no_errors
VPREB1	7441	genome.wustl.edu	37	22	22599458	22599458	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	22599458	22599458	C	T	SNP	VPREB1	NM_007128	human	genbank	57_37b	+1	reviewed	silent	c.147	p.I49	0.000	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	-	no_errors
WDR7	23335	genome.wustl.edu	37	18	54385232	54385232	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	54385232	54385232	A	T	SNP	WDR7	NM_015285	human	genbank	57_37b	+1	reviewed	missense	c.1616	p.D539V	1.000	superfamily_Prolyl oligopeptidase N-terminal domain,HMMSmart_SM00320	HMMSmart_SM00320,HMMPfam_WD40,superfamily_Prolyl oligopeptidase N-terminal domain,PatternScan_WD_REPEATS_1,superfamily_WD40 repeat-like	-	no_errors
