Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ANKRD20B	729171	genome.wustl.edu	37	2	95464577	95464577	+	RNA	SNP	T	T	C	rs10193770	byCluster;byFrequency;by2Hit2Allele	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	95464577	95464577	T	C	SNP	ANKRD20B	NR_003366	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.019	-	-	-	
CCNI2	645121	genome.wustl.edu	37	5	132084048	132084048	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	132084048	132084048	T	C	SNP	CCNI2	NM_001039780	human	genbank	57_37b	+1	provisional	missense	c.439	p.C147R	0.036	superfamily_Cyclin_like	PatternScan_CYCLINS,superfamily_Cyclin_like,HMMSmart_CYCLIN,HMMPfam_Cyclin_N	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68772218	68772218	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68772218	68772218	C	T	SNP	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	nonsense	c.67	p.Q23*	0.982	superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
DEPDC1	55635	genome.wustl.edu	37	1	68954121	68954121	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	68954121	68954121	T	-	DEL	DEPDC1	NM_001114120	human	genbank	57_37b	-1	validated	frame_shift_del	c.657	p.Q219fs	0.702	NULL	superfamily_SSF46785,HMMPfam_DEP,HMMSmart_DEP,superfamily_Rho_GAP,HMMPfam_RhoGAP	(deletion:cds_exon[68954057,68954187])	no_errors
ENSG00000214433	0	genome.wustl.edu	37	15	90838041	90838041	+	Missense_Mutation	SNP	G	G	A	rs7183871	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	90838041	90838041	G	A	SNP	ENSG00000214433	ENST00000338706	human	ensembl	57_37b	+1	known	missense	c.209	p.G70E	0.995	NULL	NULL	-	
ENSG00000247772	0	genome.wustl.edu	37	11	47378902	47378903	+	RNA	DEL	CA	CA	-	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47378902	47378903	CA	-	DEL	ENSG00000247772	ENST00000499849	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.758:0.754	-	-	(deletion:rna[47376886,47379300])	no_errors
FLYWCH1	84256	genome.wustl.edu	37	16	2983810	2983810	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2983810	2983810	T	G	SNP	FLYWCH1	NM_032296	human	genbank	57_37b	+1	validated	missense	c.1340	p.V447G	1.000	HMMPfam_FLYWCH	HMMPfam_FLYWCH	-	no_errors
GLI4	2738	genome.wustl.edu	37	8	144356931	144356931	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144356931	144356931	A	G	SNP	GLI4	NM_138465	human	genbank	57_37b	+1	validated	missense	c.182	p.D61G	0.026	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
GRID2IP	392862	genome.wustl.edu	37	7	6545509	6545509	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6545509	6545509	C	A	SNP	GRID2IP	NM_001145118	human	genbank	57_37b	-1	validated	silent	c.2574	p.L858	1.000	superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	-	no_errors
HNF1A	6927	genome.wustl.edu	37	12	121435587	121435587	+	Silent	SNP	G	G	T	rs2259816	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	121435587	121435587	G	T	SNP	HNF1A	ENST00000340577	human	ensembl	57_37b	+1	known	silent	c.1620	p.V540	0.000	HMMPfam_HNF-1A_C	superfamily_Dimerization cofactor of HNF-1 alpha,HMMPfam_HNF-1_N,superfamily_lambda repressor-like DNA-binding domains,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_HNF-1B_C,HMMPfam_HNF-1A_C	-	
KCNF1	3754	genome.wustl.edu	37	2	11053551	11053551	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	11053551	11053551	G	A	SNP	KCNF1	NM_002236	human	genbank	57_37b	+1	reviewed	silent	c.999	p.V333	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_POZ domain,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
KIR3DL2	3812	genome.wustl.edu	37	19	55363677	55363677	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55363677	55363677	C	T	SNP	KIR3DL2	NM_006737	human	genbank	57_37b	+1	reviewed	missense	c.295	p.R99C	0.000	superfamily_SSF48726,HMMSmart_IG	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors
KLHL36	79786	genome.wustl.edu	37	16	84691044	84691044	+	Silent	SNP	C	C	T	rs3751762	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84691044	84691044	C	T	SNP	KLHL36	NM_024731	human	genbank	57_37b	+1	provisional	silent	c.631	p.L211	1.000	HMMPfam_BACK	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1	-	
LOC392435	392435	genome.wustl.edu	37	X	27851021	27851021	+	Silent	SNP	A	A	G	rs1008846	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	27851021	27851021	A	G	SNP	LOC392435	XM_002343800	human	genbank	57_37b	+1	model	silent	c.693	p.E231	0.220	HMMPfam_MAGE	HMMPfam_MAGE	-	
LOC441666	441666	genome.wustl.edu	37	10	42831804	42831804	+	RNA	SNP	A	A	G	rs12268972	byCluster;byFrequency;by2Hit2Allele	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	42831804	42831804	A	G	SNP	LOC441666	NR_024380	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.010	-	-	-	
MGMT	4255	genome.wustl.edu	37	10	131565093	131565093	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	131565093	131565093	C	T	SNP	MGMT	NM_002412	human	genbank	57_37b	+1	validated	silent	c.549	p.S183	0.984	superfamily_MethylDNA_cys_mtrans_DNA_bd,HMMPfam_DNA_binding_1	HMMPfam_Methyltransf_1N,superfamily_SSF53155,PatternScan_THIOL_PROTEASE_HIS,superfamily_MethylDNA_cys_mtrans_DNA_bd,HMMPfam_DNA_binding_1,PatternScan_MGMT	-	no_errors
MYH7	4625	genome.wustl.edu	37	14	23899017	23899017	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23899017	23899017	G	A	SNP	MYH7	NM_000257	human	genbank	57_37b	-1	reviewed	missense	c.1105	p.R369W	0.995	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1	-	no_errors
OBSCN	84033	genome.wustl.edu	37	1	228559663	228559663	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228559663	228559663	C	T	SNP	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	missense	c.21184	p.P7062S	0.000	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
PCDHGB8P	56120	genome.wustl.edu	37	5	140807343	140807343	+	RNA	SNP	G	G	A	rs3828681	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140807343	140807343	G	A	SNP	PCDHGB8P	NR_001297	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.000	-	-	-	
PIK3CA	5290	genome.wustl.edu	37	3	178936083	178936083	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936083	178936083	A	G	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1625	p.E542G	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	G	rs104886003	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G						Unknown	Unknown	Phase_IV	Capture			1	Illumina GAIIx	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-
PITPNM3	83394	genome.wustl.edu	37	17	6380354	6380354	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	6380354	6380354	G	A	SNP	PITPNM3	NM_031220	human	genbank	57_37b	-1	reviewed	silent	c.1080	p.L360	0.992	NULL	HMMPfam_DDHD,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775	-	no_errors
PNMA2	10687	genome.wustl.edu	37	8	26365666	26365666	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	26365666	26365666	C	G	SNP	PNMA2	NM_007257	human	genbank	57_37b	-1	validated	missense	c.606	p.K202N	1.000	NULL	HMMPfam_Retrotrans_gag	-	no_errors
PPP1R16B	26051	genome.wustl.edu	37	20	37546989	37546989	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	37546989	37546989	G	A	SNP	PPP1R16B	NM_015568	human	genbank	57_37b	+1	reviewed	missense	c.1384	p.V462M	0.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
TAGLN	6876	genome.wustl.edu	37	11	117075033	117075033	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117075033	117075033	C	A	SNP	TAGLN	NM_001001522	human	genbank	57_37b	+1	reviewed	silent	c.564	p.A188	0.934	PatternScan_CALPONIN_1,HMMPfam_Calponin	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,PatternScan_CALPONIN_1,HMMPfam_Calponin	-	no_errors
TSC2	7249	genome.wustl.edu	37	16	2134569	2134569	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2134569	2134569	C	G	SNP	TSC2	NM_000548	human	genbank	57_37b	+1	reviewed	missense	c.4346	p.S1449C	0.007	NULL	superfamily_ARM repeat,HMMPfam_Tuberin,superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP	-	no_errors
