Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
A2ML1	144568	genome.wustl.edu	37	12	9020914	9020914	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9020914	9020914	C	T	SNP	A2ML1	NM_144670	human	genbank	57_37b	+1	validated	missense	c.4022	p.P1341L	0.000	superfamily_Alpha-macroglobulin receptor domain	HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep	-	no_errors
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431	human	genbank	57_37b	-1	reviewed	missense	c.49	p.E17K	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	
APOB48R	55911	genome.wustl.edu	37	16	28507295	28507295	+	Silent	SNP	G	G	A	rs9745758	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	28507295	28507295	G	A	SNP	APOB48R	NM_018690	human	genbank	57_37b	+1	reviewed	silent	c.933	p.E311	0.000	NULL	NULL	-	
AQP7P1	375719	genome.wustl.edu	37	9	67289275	67289275	+	RNA	SNP	G	G	T	rs75062937	byCluster	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	67289275	67289275	G	T	SNP	AQP7P1	NR_002817	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.110	-	-	-	
BSN	8927	genome.wustl.edu	37	3	49692929	49692929	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49692929	49692929	G	A	SNP	BSN	NM_003458	human	genbank	57_37b	+1	reviewed	silent	c.5940	p.L1980	0.025	NULL	HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF	-	no_errors
C19orf39	126074	genome.wustl.edu	37	19	11486514	11486514	+	Missense_Mutation	SNP	A	A	G	rs317926	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11486514	11486514	A	G	SNP	C19orf39	NM_175871	human	genbank	57_37b	+1	validated	missense	c.512	p.D171G	0.000	NULL	superfamily_SSF52540	-	
C22orf46	79640	genome.wustl.edu	37	22	42091027	42091028	+	Frame_Shift_Ins	INS	-	-	AG	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	42091027	42091028	-	AG	INS	C22orf46	ENST00000356843	human	ensembl	57_37b	+1	known	frame_shift_ins	c.837_838	p.G281fs	0.986:0.973	NULL	NULL	-	no_errors
C8orf12	83656	genome.wustl.edu	37	8	11292542	11292542	+	RNA	SNP	C	T	T	rs2280803	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	11292542	11292542	C	T	SNP	C8orf12	NR_026814	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.000	-	-	-	
CBFB	865	genome.wustl.edu	37	16	67070634	67070634	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67070634	67070634	C	A	SNP	CBFB	NM_022845	human	genbank	57_37b	+1	reviewed	silent	c.258	p.V86	1.000	HMMPfam_CBF_beta,superfamily_CBF_beta	HMMPfam_CBF_beta,superfamily_CBF_beta	-	no_errors
CCL7	6354	genome.wustl.edu	37	17	32598251	32598251	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	32598251	32598251	A	C	SNP	CCL7	NM_006273	human	genbank	57_37b	+1	reviewed	missense	c.163	p.T55P	0.987	HMMPfam_IL8,superfamily_Chemokine_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CC	HMMPfam_IL8,superfamily_Chemokine_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CC	-	no_errors
CHRD	8646	genome.wustl.edu	37	3	184100846	184100846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	184100846	184100846	G	A	SNP	CHRD	NM_003741	human	genbank	57_37b	+1	reviewed	missense	c.1108	p.E370K	1.000	HMMPfam_CHRD,HMMSmart_SM00754	HMMPfam_VWC,HMMSmart_SM00214,HMMPfam_CHRD,HMMSmart_SM00754,PatternScan_VWFC_1	-	no_errors
CSH2	1443	genome.wustl.edu	37	17	61950968	61950968	+	Missense_Mutation	SNP	C	C	G	rs41295025	byFrequency	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	61950968	61950968	C	G	SNP	CSH2	NM_020991	human	genbank	57_37b	-1	reviewed	missense	c.7	p.A3P	0.998	NULL	HMMPfam_Hormone_1,superfamily_4-helical cytokines,PatternScan_SOMATOTROPIN_1,PatternScan_SOMATOTROPIN_2	-	
ENSG00000206769	0	genome.wustl.edu	37	18	59058895	59058895	+	RNA	SNP	C	C	T	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	59058895	59058895	C	T	SNP	ENSG00000206769	ENST00000384042	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.040	-	-	-	no_errors
ENSG00000207053	0	genome.wustl.edu	37	20	34516557	34516557	+	RNA	SNP	G	G	A	rs74580133	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	34516557	34516557	G	A	SNP	ENSG00000207053	ENST00000384325	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.002	-	-	-	
ENSG00000237940	0	genome.wustl.edu	37	2	242916600	242916600	+	Splice_Site	SNP	G	C	C	rs76484076	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	242916600	242916600	G	C	SNP	ENSG00000237940	ENST00000451070	human	ensembl	57_37b	+1	known	splice_site	c.NULL	NULL	0.023	-	-	-	
ENSG00000239811	0	genome.wustl.edu	37	6	160913932	160913932	+	Missense_Mutation	SNP	G	G	A	rs7749199	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	160913932	160913932	G	A	SNP	ENSG00000239811	ENST00000447327	human	ensembl	57_37b	-1	known	missense	c.272	p.T91M	0.836	superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle	superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1	-	
ENSG00000243372	0	genome.wustl.edu	37	3	133383854	133383854	+	RNA	SNP	A	A	G	rs6774104	byCluster;by2Hit2Allele;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	133383854	133383854	A	G	SNP	ENSG00000243372	ENST00000496287	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.008	-	-	-	
ENSG00000244792	0	genome.wustl.edu	37	2	3589686	3589686	+	RNA	SNP	G	C	C	rs77611558	byFrequency;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	3589686	3589686	G	C	SNP	ENSG00000244792	ENST00000501490	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	
ENSG00000245666	0	genome.wustl.edu	37	14	102354585	102354585	+	RNA	SNP	A	G	G	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	102354585	102354585	A	G	SNP	ENSG00000245666	ENST00000501273	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000245954	0	genome.wustl.edu	37	4	153022292	153022292	+	RNA	SNP	G	G	A	rs6535836	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	153022292	153022292	G	A	SNP	ENSG00000245954	ENST00000499452	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.001	-	-	-	
ENSG00000245987	0	genome.wustl.edu	37	2	153031941	153031941	+	RNA	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	153031941	153031941	G	A	SNP	ENSG00000245987	ENST00000501582	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000246034	0	genome.wustl.edu	37	6	42197707	42197707	+	RNA	SNP	C	T	T	rs61612642	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42197707	42197707	C	T	SNP	ENSG00000246034	ENST00000501362	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	
ENSG00000246858	0	genome.wustl.edu	37	9	138702759	138702759	+	RNA	SNP	G	A	A	rs113455852	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	138702759	138702759	G	A	SNP	ENSG00000246858	ENST00000502096	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.005	-	-	-	
ENSG00000247049	0	genome.wustl.edu	37	5	180650658	180650658	+	RNA	SNP	A	G	G	rs2546392	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	180650658	180650658	A	G	SNP	ENSG00000247049	ENST00000499096	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.000	-	-	-	
ENSG00000247076	0	genome.wustl.edu	37	8	134057156	134057156	+	RNA	SNP	C	C	T	rs2293208	byHapMap	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	134057156	134057156	C	T	SNP	ENSG00000247076	ENST00000500587	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
ENSG00000247356	0	genome.wustl.edu	37	19	46274972	46274972	+	RNA	SNP	A	A	C	rs915915	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46274972	46274972	A	C	SNP	ENSG00000247356	ENST00000501006	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.044	-	-	-	
ENSG00000247548	0	genome.wustl.edu	37	14	73711953	73711953	+	Splice_Site	SNP	C	A	A	rs61986932	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	73711953	73711953	C	A	SNP	ENSG00000247548	ENST00000501793	human	ensembl	57_37b	-1	novel	splice_site	c.NULL	NULL	0.002	-	-	-	
ENSG00000247626	0	genome.wustl.edu	37	2	198572076	198572077	+	RNA	INS	-	-	TTC	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	198572076	198572077	-	TTC	INS	ENSG00000247626	ENST00000499940	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
FCGBP	8857	genome.wustl.edu	37	19	40407987	40407987	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40407987	40407987	G	A	SNP	FCGBP	NM_003890	human	genbank	57_37b	-1	validated	silent	c.4734	p.A1578	0.119	superfamily_Cysrich_TIL,HMMPfam_TIL	HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC	-	no_errors
FUT2	2524	genome.wustl.edu	37	19	49206674	49206674	+	Nonsense_Mutation	SNP	G	G	A	rs601338	byCluster;byFrequency;by2Hit2Allele	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49206674	49206674	G	A	SNP	FUT2	NM_000511	human	genbank	57_37b	+1	reviewed	nonsense	c.461	p.W154*	1.000	HMMPfam_Glyco_transf_11	HMMPfam_Glyco_transf_11	-	
GLI4	2738	genome.wustl.edu	37	8	144333315	144333315	+	Missense_Mutation	SNP	G	A	A	rs4570175	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144333315	144333315	G	A	SNP	GLI4	ENST00000413511	human	ensembl	57_37b	+1	known	missense	c.823	p.G275S	0.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	
GPR125	166647	genome.wustl.edu	37	4	22415369	22415369	+	Silent	SNP	G	G	C	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	22415369	22415369	G	C	SNP	GPR125	NM_145290	human	genbank	57_37b	-1	validated	silent	c.1878	p.L626	0.908	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_Hormone receptor domain (HRM Pfam 02793),HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
GPR98	84059	genome.wustl.edu	37	5	90001311	90001311	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	90001311	90001311	T	A	SNP	GPR98	NM_032119	human	genbank	57_37b	+1	reviewed	missense	c.8481	p.N2827K	1.000	HMMSmart_SM00237	HMMSmart_SM00237,HMMPfam_Calx-beta,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP,PatternScan_A_DEAMINASE,PatternScan_LIPOYL,HMMPfam_GPS	-	no_errors
IQCB1	9657	genome.wustl.edu	37	3	121526220	121526220	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121526220	121526220	C	A	SNP	IQCB1	NM_001023570	human	genbank	57_37b	-1	reviewed	missense	c.558	p.M186I	0.144	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors
ITGA1	3672	genome.wustl.edu	37	5	52193332	52193332	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	52193332	52193332	G	A	SNP	ITGA1	NM_181501	human	genbank	57_37b	+1	reviewed	silent	c.1137	p.Q379	1.000	superfamily_SSF69318	superfamily_SSF69318,HMMSmart_Int_alpha,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA	-	no_errors
KIAA0753	9851	genome.wustl.edu	37	17	6538355	6538355	+	Silent	SNP	G	G	A	rs2301873	byCluster;byFrequency;bySubmitter;byHapMap;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	6538355	6538355	G	A	SNP	KIAA0753	NM_014804	human	genbank	57_37b	-1	validated	silent	c.69	p.S23	0.002	NULL	NULL	-	
LOC100128775	0	genome.wustl.edu	37	1	84710471	84710471	+	RNA	SNP	C	C	A	rs72940042	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	84710471	84710471	C	A	SNP	LOC100128775	XR_039769	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.996	-	-	-	
LOC100287867	0	genome.wustl.edu	37	5	108784165	108784166	+	In_Frame_Ins	INS	-	-	ACT	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	108784165	108784166	-	ACT	INS	LOC100287867	XM_002342547	human	genbank	57_37b	-1	model	in_frame_ins	c.56_55	p.I19in_frame_insKF	0.865:0.944	NULL	NULL	-	no_errors
LOC100289972	0	genome.wustl.edu	37	2	36841397	36841397	+	Silent	SNP	A	G	G	rs72870305	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	36841397	36841397	A	G	SNP	LOC100289972	XM_002348212	human	genbank	57_37b	-1	model	silent	c.207	p.D69	0.000	NULL	NULL	-	
LOC100291741	0	genome.wustl.edu	37	5	2536463	2536463	+	Missense_Mutation	SNP	C	T	T	rs9313001	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	2536463	2536463	C	T	SNP	LOC100291741	XM_002345820	human	genbank	57_37b	+1	model	missense	c.296	p.T99I	0.000	NULL	NULL	-	
LOC100293968	0	genome.wustl.edu	37	19	653830	653830	+	RNA	SNP	C	T	T	rs4919880	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	653830	653830	C	T	SNP	LOC100293968	XR_078870	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.067	-	-	-	
LOC100294458	0	genome.wustl.edu	37	2	47217150	47217150	+	Splice_Site	SNP	C	T	T	rs55641002	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	47217150	47217150	C	T	SNP	LOC100294458	XR_079131	human	genbank	57_37b	-1	model	splice_site	c.NULL	NULL	0.010	-	-	-	
LOC127841	0	genome.wustl.edu	37	1	204337634	204337634	+	RNA	SNP	T	T	C	rs2942138	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	204337634	204337634	T	C	SNP	LOC127841	NR_027022	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	
LOC388692	388692	genome.wustl.edu	37	1	149281798	149281798	+	RNA	SNP	C	C	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	149281798	149281798	C	A	SNP	LOC388692	NR_027002	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.002	-	-	-	no_errors
LOC402644	0	genome.wustl.edu	37	7	28319310	28319326	+	In_Frame_Del	DEL	GTTGACCATGGCTGATA	GTTGACCATGGCTGATA	-	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	GTTGACCATGGCTGATA	GTTGACCATGGCTGATA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	28319310	28319326	GTTGACCATGGCTGATA	-	DEL	LOC402644	NM_001126493	human	genbank	57_37b	-1	predicted	in_frame_del	c.9_1	p.MVN1in_frame_del	0.999:0.999:0.993:0.966:0.726:0.827:0.832:0.802:0.726	superfamily_CSA_PPIase	superfamily_CSA_PPIase,HMMPfam_Pro_isomerase	(deletion:cds_exon[28318842,28319318], flank[28319319,28369318])	no_errors
LOC645314	645314	genome.wustl.edu	37	2	194141424	194141424	+	Missense_Mutation	SNP	G	G	C	rs13409950	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	194141424	194141424	G	C	SNP	LOC645314	XM_002342299	human	genbank	57_37b	-1	model	missense	c.510	p.D170E	0.003	NULL	NULL	-	
LOC646214	646214	genome.wustl.edu	37	15	21935479	21935479	+	RNA	SNP	G	T	T	rs28465546	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21935479	21935479	G	T	SNP	LOC646214	NR_027053	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.030	-	-	-	
MAP2K4	6416	genome.wustl.edu	37	17	12011144	12011144	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	12011144	12011144	C	T	SNP	MAP2K4	NM_003010	human	genbank	57_37b	+1	reviewed	missense	c.551	p.S184L	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MYOM3	127294	genome.wustl.edu	37	1	24407903	24407903	+	Missense_Mutation	SNP	C	C	T	rs12082295	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	24407903	24407903	C	T	SNP	MYOM3	NM_152372	human	genbank	57_37b	-1	validated	missense	c.2324	p.R775Q	0.441	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_EF_HAND_1,HMMPfam_ig	-	
NEB	4703	genome.wustl.edu	37	2	152466574	152466574	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152466574	152466574	C	A	SNP	NEB	NM_004543	human	genbank	57_37b	-1	reviewed	nonsense	c.11350	p.E3784*	0.990	HMMSmart_SM00227	HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
ODZ2	57451	genome.wustl.edu	37	5	167517656	167517656	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	167517656	167517656	G	C	SNP	ODZ2	NM_001122679	human	genbank	57_37b	+1	inferred	missense	c.1593	p.Q531H	1.000	NULL	HMMPfam_Ten_N,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Carboxypeptidase regulatory domain,superfamily_NHL repeat,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors
PCDH9	5101	genome.wustl.edu	37	13	67799842	67799842	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	67799842	67799842	C	G	SNP	PCDH9	NM_203487	human	genbank	57_37b	-1	reviewed	missense	c.2731	p.E911Q	1.000	HMMPfam_Protocadherin	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMPfam_Protocadherin	-	no_errors
PDE3A	5139	genome.wustl.edu	37	12	20787975	20787975	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	20787975	20787975	G	A	SNP	PDE3A	NM_000921	human	genbank	57_37b	+1	validated	silent	c.1986	p.E662	0.527	NULL	superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
PRAM1	84106	genome.wustl.edu	37	19	8564533	8564533	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8564533	8564533	G	A	SNP	PRAM1	NM_032152	human	genbank	57_37b	-1	reviewed	silent	c.159	p.S53	0.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_2	-	no_errors
PRDM16	63976	genome.wustl.edu	37	1	3313062	3313062	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	3313062	3313062	A	G	SNP	PRDM16	NM_022114	human	genbank	57_37b	+1	reviewed	missense	c.581	p.Y194C	1.000	superfamily_SET domain,HMMSmart_SM00317	superfamily_SET domain,HMMSmart_SM00317,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PTPN14	5784	genome.wustl.edu	37	1	214557335	214557335	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	214557335	214557335	G	A	SNP	PTPN14	NM_005401	human	genbank	57_37b	-1	reviewed	silent	c.1863	p.L621	0.919	NULL	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
PTPRH	5794	genome.wustl.edu	37	19	55708037	55708037	+	Missense_Mutation	SNP	G	G	A	rs73619559	byCluster;by1000genomes	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55708037	55708037	G	A	SNP	PTPRH	NM_002842	human	genbank	57_37b	-1	validated	missense	c.2110	p.R704W	0.000	NULL	HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	
QSOX1	5768	genome.wustl.edu	37	1	180147983	180147983	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	180147983	180147983	G	A	SNP	QSOX1	NM_002826	human	genbank	57_37b	+1	reviewed	silent	c.570	p.L190	1.000	NULL	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,superfamily_FAD-dependent thiol oxidase,HMMPfam_Evr1_Alr	-	no_errors
RASGRF1	5923	genome.wustl.edu	37	15	79296367	79296367	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	79296367	79296367	G	A	SNP	RASGRF1	NM_002891	human	genbank	57_37b	-1	reviewed	silent	c.2274	p.S758	1.000	superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	-	no_errors
RIMBP3	85376	genome.wustl.edu	37	22	20456978	20456978	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	20456978	20456978	C	T	SNP	RIMBP3	NM_015672	human	genbank	57_37b	-1	validated	missense	c.4324	p.G1442S	0.000	NULL	PatternScan_ALDEHYDE_DEHYDR_CYS,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Fibronectin type III	-	no_errors
RPL7	6129	genome.wustl.edu	37	8	74204479	74204479	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	74204479	74204479	G	A	SNP	RPL7	NM_000971	human	genbank	57_37b	-1	reviewed	silent	c.285	p.I95	1.000	HMMPfam_Ribosomal_L30,superfamily_Ribosomal protein L30p/L7e	HMMPfam_Ribosomal_L30_N,HMMPfam_Ribosomal_L30,superfamily_Ribosomal protein L30p/L7e,PatternScan_RIBOSOMAL_L30	-	no_errors
SHPRH	257218	genome.wustl.edu	37	6	146242419	146242419	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	146242419	146242419	C	G	SNP	SHPRH	NM_001042683	human	genbank	57_37b	-1	validated	missense	c.3904	p.E1302Q	1.000	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00526,HMMPfam_Linker_histone,superfamily_""Winged helix"" DNA-binding domain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_RING/U-box,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
SMCP	4184	genome.wustl.edu	37	1	152857160	152857160	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152857160	152857160	G	A	SNP	SMCP	NM_030663	human	genbank	57_37b	+1	reviewed	missense	c.262	p.E88K	0.000	NULL	NULL	-	no_errors
SNX13	23161	genome.wustl.edu	37	7	17873801	17873801	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	17873801	17873801	C	G	SNP	SNX13	NM_015132	human	genbank	57_37b	-1	reviewed	missense	c.1471	p.E491Q	1.000	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	HMMPfam_PXA,HMMSmart_SM00313,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMPfam_Nexin_C	-	no_errors
STAB2	55576	genome.wustl.edu	37	12	104056685	104056685	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	104056685	104056685	G	A	SNP	STAB2	NM_017564	human	genbank	57_37b	+1	reviewed	missense	c.1931	p.R644Q	0.950	superfamily_BIgH3_FAS1,HMMPfam_Fasciclin,HMMSmart_FAS1	HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_alliinase,superfamily_SSF57196,HMMPfam_EGF,superfamily_BIgH3_FAS1,HMMPfam_Fasciclin,HMMSmart_FAS1,HMMPfam_Laminin_EGF,PatternScan_EGF_LAM_1,superfamily_Grow_fac_recept,HMMPfam_EGF_2,HMMSmart_LINK,HMMPfam_Xlink,superfamily_C-type_lectin_fold,PatternScan_LINK_1	-	no_errors
SURF6	6838	genome.wustl.edu	37	9	136199031	136199031	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	136199031	136199031	G	A	SNP	SURF6	NM_006753	human	genbank	57_37b	-1	reviewed	missense	c.760	p.R254C	1.000	HMMPfam_SURF6	HMMPfam_SURF6	-	no_errors
SYK	6850	genome.wustl.edu	37	9	93629418	93629418	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	93629418	93629418	G	T	SNP	SYK	NM_003177	human	genbank	57_37b	+1	validated	missense	c.852	p.W284C	1.000	NULL	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TGM4	7047	genome.wustl.edu	37	3	44955078	44955078	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	44955078	44955078	C	T	SNP	TGM4	NM_003241	human	genbank	57_37b	+1	validated	missense	c.1916	p.T639M	0.137	superfamily_Transglut_C,HMMPfam_Transglut_C	superfamily_Ig_E-set,HMMPfam_Transglut_N,superfamily_SSF54001,HMMSmart_TGc,PatternScan_TRANSGLUTAMINASES,HMMPfam_Transglut_core,superfamily_Transglut_C,HMMPfam_Transglut_C	-	no_errors
TMEM20	159371	genome.wustl.edu	37	10	95660752	95660752	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	95660752	95660752	G	A	SNP	TMEM20	NM_001134658	human	genbank	57_37b	+1	validated	silent	c.603	p.V201	0.997	HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE	HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors
TNS3	64759	genome.wustl.edu	37	7	47344561	47344561	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	47344561	47344561	C	T	SNP	TNS3	NM_022748	human	genbank	57_37b	-1	validated	silent	c.2691	p.G897	1.000	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PTB	-	no_errors
TOMM34	10953	genome.wustl.edu	37	20	43585106	43585106	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	43585106	43585106	C	T	SNP	TOMM34	NM_006809	human	genbank	57_37b	-1	reviewed	missense	c.148	p.E50K	0.985	superfamily_Prenyl_trans	HMMSmart_TPR,superfamily_Prenyl_trans,HMMPfam_TPR_1	-	no_errors
TRIB2	28951	genome.wustl.edu	37	2	12882823	12882824	+	RNA	DEL	TC	TC	-	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	12882823	12882824	TC	-	DEL	TRIB2	NR_027303	human	genbank	57_37b	+1	reviewed	rna	NULL	NULL	1.000:1.000	-	-	(deletion:rna[12880452,12882860])	no_errors
TSC22D1	8848	genome.wustl.edu	37	13	45148990	45148990	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	45148990	45148990	G	A	SNP	TSC22D1	NM_183422	human	genbank	57_37b	-1	validated	silent	c.1221	p.F407	1.000	NULL	PatternScan_TSC22,HMMPfam_TSC22	-	no_errors
TSC22D1	8848	genome.wustl.edu	37	13	45149901	45149901	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	45149901	45149901	G	C	SNP	TSC22D1	NM_183422	human	genbank	57_37b	-1	validated	missense	c.310	p.Q104E	1.000	NULL	HMMPfam_TSC22,PatternScan_TSC22	-	no_errors
TTLL5	23093	genome.wustl.edu	37	14	76249634	76249634	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	76249634	76249634	C	T	SNP	TTLL5	NM_015072	human	genbank	57_37b	+1	reviewed	missense	c.2747	p.S916F	0.051	NULL	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
UBC	7316	genome.wustl.edu	37	12	125397950	125397950	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	125397950	125397950	C	G	SNP	UBC	NM_021009	human	genbank	57_37b	-1	validated	missense	c.368	p.G123A	1.000	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1	-	no_errors
UNC5D	137970	genome.wustl.edu	37	8	35616880	35616880	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	35616880	35616880	G	A	SNP	UNC5D	NM_080872	human	genbank	57_37b	+1	validated	missense	c.2206	p.E736K	1.000	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,PatternScan_SERPIN,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors
VANGL1	81839	genome.wustl.edu	37	1	116233968	116233968	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	116233968	116233968	G	T	SNP	VANGL1	NM_138959	human	genbank	57_37b	+1	reviewed	missense	c.1543	p.V515F	1.000	HMMPfam_Strabismus	HMMPfam_Strabismus	-	no_errors
ZFYVE16	9765	genome.wustl.edu	37	5	79733498	79733498	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	79733498	79733498	C	T	SNP	ZFYVE16	NM_001105251	human	genbank	57_37b	+1	validated	nonsense	c.994	p.Q332*	0.935	NULL	HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors
