Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCA12	26154	genome.wustl.edu	37	2	215813332	215813332	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	215813332	215813332	C	G	SNP	ABCA12	NM_173076	human	genbank	57_37b	-1	reviewed	missense	c.7092	p.K2364N	0.823	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ABO	28	genome.wustl.edu	37	9	136131684	136131684	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	136131684	136131684	T	G	SNP	ABO	ENST00000319878	human	ensembl	57_37b	-1	known	missense	c.431	p.H144P	0.024	HMMPfam_Glyco_transf_6,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Glyco_transf_6,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
ACSM5	54988	genome.wustl.edu	37	16	20442596	20442596	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	20442596	20442596	G	A	SNP	ACSM5	NM_017888	human	genbank	57_37b	+1	validated	missense	c.1261	p.V421I	0.473	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors
ARHGEF17	9828	genome.wustl.edu	37	11	73064010	73064010	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	73064010	73064010	C	T	SNP	ARHGEF17	NM_014786	human	genbank	57_37b	+1	validated	nonsense	c.3406	p.Q1136*	1.000	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	-	no_errors
ATG16L2	89849	genome.wustl.edu	37	11	72537859	72537859	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	72537859	72537859	C	T	SNP	ATG16L2	NM_033388	human	genbank	57_37b	+1	validated	missense	c.1357	p.R453C	0.214	superfamily_WD40 repeat-like,HMMSmart_SM00320	HMMPfam_ATG16,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
B4GALNT2	124872	genome.wustl.edu	37	17	47236488	47236488	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	47236488	47236488	C	A	SNP	B4GALNT2	NM_153446	human	genbank	57_37b	+1	validated	silent	c.768	p.I256	0.917	NULL	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2	-	no_errors
C5orf13	9315	genome.wustl.edu	37	5	111066712	111066712	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	111066712	111066712	C	T	SNP	C5orf13	NM_001142475	human	genbank	57_37b	-1	validated	missense	c.245	p.R82H	1.000	NULL	NULL	-	no_errors
C6orf10	10665	genome.wustl.edu	37	6	32298378	32298378	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32298378	32298378	G	T	SNP	C6orf10	ENST00000422130	human	ensembl	57_37b	-1	known	splice_site	c.451-2	e20-2	0.979	-	-	-	no_errors
DENND3	22898	genome.wustl.edu	37	8	142161880	142161880	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	142161880	142161880	G	A	SNP	DENND3	NM_014957	human	genbank	57_37b	+1	validated	missense	c.778	p.A260T	1.000	HMMPfam_DENN,HMMSmart_SM00799	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
ENSG00000227572	0	genome.wustl.edu	37	2	118850876	118850876	+	Missense_Mutation	SNP	T	T	G	rs111499188	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	118850876	118850876	T	G	SNP	ENSG00000227572	ENST00000458348	human	ensembl	57_37b	+1	known	missense	c.39	p.D13E	0.033	NULL	NULL	-	
ENSG00000243979	0	genome.wustl.edu	37	1	109535053	109535053	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	109535053	109535053	T	G	SNP	ENSG00000243979	ENST00000391360	human	ensembl	57_37b	+1	known	missense	c.150	p.D50E	1.000	superfamily_Ribosomal_L22,HMMPfam_Ribosomal_L22	superfamily_Ribosomal_L22,HMMPfam_Ribosomal_L22,PatternScan_RIBOSOMAL_L22	-	no_errors
FIP1L1	81608	genome.wustl.edu	37	4	54319224	54319224	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	54319224	54319224	C	A	SNP	FIP1L1	NM_030917	human	genbank	57_37b	+1	reviewed	silent	c.1423	p.R475	0.990	NULL	HMMPfam_Fip1	-	no_errors
GABRA1	2554	genome.wustl.edu	37	5	161281210	161281210	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	161281210	161281210	G	A	SNP	GABRA1	NM_000806	human	genbank	57_37b	+1	reviewed	missense	c.121	p.V41I	1.000	superfamily_Neur_chan_LBD	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors
GABRB2	2561	genome.wustl.edu	37	5	160753407	160753407	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	160753407	160753407	G	A	SNP	GABRB2	NM_021911	human	genbank	57_37b	-1	reviewed	missense	c.1159	p.R387W	1.000	superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors
GPR125	166647	genome.wustl.edu	37	4	22390729	22390729	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	22390729	22390729	C	A	SNP	GPR125	NM_145290	human	genbank	57_37b	-1	validated	missense	c.2705	p.S902I	1.000	HMMPfam_7tm_2	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_Hormone receptor domain (HRM Pfam 02793),HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
GRIN2B	2904	genome.wustl.edu	37	12	13722814	13722814	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	13722814	13722814	G	A	SNP	GRIN2B	NM_000834	human	genbank	57_37b	-1	reviewed	missense	c.2309	p.S770F	1.000	superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan	superfamily_SSF53822,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C	-	no_errors
HSPD1	3329	genome.wustl.edu	37	2	198352668	198352668	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	198352668	198352668	T	G	SNP	HSPD1	NM_002156	human	genbank	57_37b	-1	reviewed	missense	c.1483	p.M495L	0.632	superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1	superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,superfamily_SSF54849,superfamily_SSF52029,PatternScan_CHAPERONINS_CPN60	-	no_errors
IFNA7	3444	genome.wustl.edu	37	9	21201826	21201826	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	21201826	21201826	G	T	SNP	IFNA7	NM_021057	human	genbank	57_37b	-1	validated	nonsense	c.339	p.Y113*	0.000	HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076	HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076,PatternScan_INTERFERON_A_B_D	-	no_errors
ITGA2	3673	genome.wustl.edu	37	5	52382807	52382807	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	52382807	52382807	C	T	SNP	ITGA2	NM_002203	human	genbank	57_37b	+1	reviewed	missense	c.3284	p.T1095M	0.380	superfamily_Integrin domains	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
ITGB1	3688	genome.wustl.edu	37	10	33217124	33217124	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	33217124	33217124	T	G	SNP	ITGB1	NM_033667	human	genbank	57_37b	-1	reviewed	missense	c.445	p.M149L	1.000	HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300,HMMSmart_VWA	HMMSmart_PSI,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300,HMMSmart_VWA,superfamily_SSF69179,PatternScan_EGF_1,HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA,superfamily_SSF57196,superfamily_Integrin_bsu_tail,HMMPfam_Integrin_B_tail,HMMPfam_Integrin_b_cyt	-	no_errors
KIAA0907	22889	genome.wustl.edu	37	1	155886454	155886454	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155886454	155886454	C	T	SNP	KIAA0907	NM_014949	human	genbank	57_37b	-1	predicted	silent	c.1515	p.K505	1.000	NULL	superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
KIAA1109	84162	genome.wustl.edu	37	4	123193467	123193467	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	123193467	123193467	C	T	SNP	KIAA1109	NM_015312	human	genbank	57_37b	+1	reviewed	missense	c.8353	p.R2785C	1.000	NULL	PatternScan_ASP_PROTEASE,HMMPfam_FSA_C	-	no_errors
MAP1A	4130	genome.wustl.edu	37	15	43818899	43818899	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43818899	43818899	G	A	SNP	MAP1A	NM_002373	human	genbank	57_37b	+1	reviewed	missense	c.5228	p.R1743Q	0.478	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
MAP7	9053	genome.wustl.edu	37	6	136686953	136686953	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	136686953	136686953	A	-	DEL	MAP7	NM_003980	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1193	p.L398fs	0.000	NULL	HMMPfam_MAP7	(deletion:cds_exon[136686873,136687156])	no_errors
MAPK4	5596	genome.wustl.edu	37	18	48190626	48190626	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	48190626	48190626	G	A	SNP	MAPK4	NM_002747	human	genbank	57_37b	+1	reviewed	missense	c.298	p.V100M	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
OR2T4	127074	genome.wustl.edu	37	1	248525348	248525348	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248525348	248525348	G	A	SNP	OR2T4	NM_001004696	human	genbank	57_37b	+1	provisional	missense	c.466	p.V156M	0.575	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR5K2	402135	genome.wustl.edu	37	3	98216663	98216663	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	98216663	98216663	G	A	SNP	OR5K2	NM_001004737	human	genbank	57_37b	+1	provisional	missense	c.139	p.A47T	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR6C1	390321	genome.wustl.edu	37	12	55714603	55714603	+	Missense_Mutation	SNP	G	G	A	rs75802465	byCluster;byFrequency;by1000genomes	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	55714603	55714603	G	A	SNP	OR6C1	NM_001005182	human	genbank	57_37b	+1	provisional	missense	c.220	p.V74I	0.014	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	
PCDHA5	56143	genome.wustl.edu	37	5	140202966	140202966	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140202966	140202966	G	A	SNP	PCDHA5	NM_018908	human	genbank	57_37b	+1	reviewed	missense	c.1606	p.A536T	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCNT	5116	genome.wustl.edu	37	21	47754627	47754627	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47754627	47754627	G	A	SNP	PCNT	NM_006031	human	genbank	57_37b	+1	reviewed	missense	c.584	p.R195H	0.008	NULL	HMMPfam_PACT_coil_coil	-	no_errors
PIKFYVE	200576	genome.wustl.edu	37	2	209190253	209190253	+	Silent	SNP	C	C	T	rs61752187	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	209190253	209190253	C	T	SNP	PIKFYVE	NM_015040	human	genbank	57_37b	+1	validated	silent	c.2718	p.Y906	0.000	NULL	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049,superfamily_GroEL-intermediate domain like,HMMPfam_Cpn60_TCP1,superfamily_GroEL apical domain-like,superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K"	-	
PLCZ1	89869	genome.wustl.edu	37	12	18876408	18876408	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	18876408	18876408	C	T	SNP	PLCZ1	NM_033123	human	genbank	57_37b	-1	provisional	silent	c.204	p.T68	0.226	superfamily_EF-hand	superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
POLR1A	25885	genome.wustl.edu	37	2	86258493	86258493	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	86258493	86258493	T	C	SNP	POLR1A	NM_015425	human	genbank	57_37b	-1	validated	missense	c.4538	p.D1513G	0.983	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb1_5	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb1_1,HMMSmart_SM00663,HMMPfam_RNA_pol_Rpb1_2,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_4,HMMPfam_RNA_pol_Rpb1_5	-	no_errors
POM121L10P	0	genome.wustl.edu	37	22	25041412	25041412	+	RNA	SNP	T	T	C	rs57463766	byCluster	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	25041412	25041412	T	C	SNP	POM121L10P	NR_024593	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	
PRSS33	260429	genome.wustl.edu	37	16	2834711	2834711	+	Silent	SNP	G	G	A	rs45570838	byCluster;byFrequency;by1000genomes	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2834711	2834711	G	A	SNP	PRSS33	NM_152891	human	genbank	57_37b	-1	validated	silent	c.777	p.N259	1.000	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	
RAB25	57111	genome.wustl.edu	37	1	156038083	156038083	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156038083	156038083	G	A	SNP	RAB25	NM_020387	human	genbank	57_37b	+1	provisional	missense	c.262	p.A88T	1.000	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	-	no_errors
RASGRP1	10125	genome.wustl.edu	37	15	38805032	38805032	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	38805032	38805032	C	T	SNP	RASGRP1	NM_005739	human	genbank	57_37b	-1	reviewed	silent	c.801	p.T267	1.000	superfamily_Ras GEF,HMMPfam_RasGEF,HMMSmart_SM00147	superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	-	no_errors
RBM33	155435	genome.wustl.edu	37	7	155493674	155493674	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	155493674	155493674	C	G	SNP	RBM33	ENST00000392759	human	ensembl	57_37b	+1	known	missense	c.895	p.L299V	0.001	NULL	NULL	-	no_errors
RPH3A	22895	genome.wustl.edu	37	12	113314581	113314581	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	113314581	113314581	G	T	SNP	RPH3A	NM_001143854	human	genbank	57_37b	+1	validated	missense	c.1081	p.A361S	0.920	NULL	HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
SARDH	1757	genome.wustl.edu	37	9	136594964	136594964	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	136594964	136594964	G	T	SNP	SARDH	NM_001134707	human	genbank	57_37b	-1	reviewed	silent	c.838	p.R280	0.661	superfamily_SSF51905,HMMPfam_DAO	superfamily_SSF51905,HMMPfam_DAO,superfamily_SSF54373,superfamily_SSF103025,HMMPfam_GCV_T,HMMPfam_GCV_T_C,superfamily_SSF101790	-	no_errors
SEC24B	10427	genome.wustl.edu	37	4	110442693	110442693	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	110442693	110442693	C	G	SNP	SEC24B	NM_006323	human	genbank	57_37b	+1	reviewed	missense	c.2419	p.R807G	1.000	superfamily_beta-sandwich domain of Sec23/24,HMMPfam_Sec23_trunk,superfamily_vWA-like	PatternScan_MIP,superfamily_beta-sandwich domain of Sec23/24,superfamily_Zn-finger domain of Sec23/24,HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,superfamily_vWA-like,HMMPfam_Sec23_BS,superfamily_Helical domain of Sec23/24,HMMPfam_Sec23_helical,superfamily_C-terminal gelsolin-like domain of Sec23/24,HMMPfam_Gelsolin	-	no_errors
SERPINB7	8710	genome.wustl.edu	37	18	61463607	61463607	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	61463607	61463607	T	C	SNP	SERPINB7	NM_001040147	human	genbank	57_37b	+1	validated	silent	c.444	p.N148	0.085	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors
STRBP	55342	genome.wustl.edu	37	9	125923337	125923337	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	125923337	125923337	C	T	SNP	STRBP	NM_018387	human	genbank	57_37b	-1	validated	silent	c.546	p.S182	1.000	HMMSmart_SM00572,HMMPfam_DZF	HMMSmart_SM00572,HMMPfam_DZF,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	-	no_errors
SYT17	51760	genome.wustl.edu	37	16	19195122	19195133	+	In_Frame_Del	DEL	ACCGTGCGCGTG	ACCGTGCGCGTG	-	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	ACCGTGCGCGTG	ACCGTGCGCGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	19195122	19195133	ACCGTGCGCGTG	-	DEL	SYT17	NM_016524	human	genbank	57_37b	+1	validated	in_frame_del	c.604_615	p.TVRV202in_frame_del	0.395:0.395:0.347:0.999:0.998:0.242:0.052:0.391:0.298:0.996:1.000:1.000	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	(deletion:cds_exon[19194850,19195469])	no_errors
TATDN2	9797	genome.wustl.edu	37	3	10301826	10301826	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10301826	10301826	T	C	SNP	TATDN2	NM_014760	human	genbank	57_37b	+1	validated	silent	c.420	p.D140	1.000	NULL	superfamily_SSF51556,PatternScan_TATD_1,HMMPfam_TatD_DNase,PatternScan_TATD_2,PatternScan_TATD_3	-	no_errors
TFPI2	7980	genome.wustl.edu	37	7	93518420	93518420	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	93518420	93518420	C	-	DEL	TFPI2	NM_006528	human	genbank	57_37b	-1	provisional	frame_shift_del	c.387	p.C130fs	0.000	superfamily_Prot_inh_Kunz-m,HMMSmart_KU,HMMPfam_Kunitz_BPTI	superfamily_Prot_inh_Kunz-m,HMMSmart_KU,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	(deletion:cds_exon[93518347,93518535])	no_errors
TIGD2	166815	genome.wustl.edu	37	4	90035623	90035623	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	90035623	90035623	C	A	SNP	TIGD2	NM_145715	human	genbank	57_37b	+1	reviewed	missense	c.1498	p.L500M	0.998	NULL	HMMPfam_CENP-B_N,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind,HMMSmart_CENPB,HMMPfam_DDE	-	no_errors
TMEM48	55706	genome.wustl.edu	37	1	54293701	54293701	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	54293701	54293701	A	C	SNP	TMEM48	NM_018087	human	genbank	57_37b	-1	validated	missense	c.426	p.F142L	0.166	HMMPfam_Ndc1_Nup	HMMPfam_Ndc1_Nup	-	no_errors
TPM1	7168	genome.wustl.edu	37	15	63336291	63336291	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	63336291	63336291	C	-	DEL	TPM1	NM_000366	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.180	p.S61fs	1.000	HMMPfam_Tropomyosin	HMMPfam_Tropomyosin,PatternScan_TROPOMYOSIN	(deletion:cds_exon[63336226,63336351])	no_errors
TRAF6	7189	genome.wustl.edu	37	11	36518753	36518753	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	36518753	36518753	T	C	SNP	TRAF6	NM_004620	human	genbank	57_37b	-1	reviewed	missense	c.511	p.K171E	0.987	HMMPfam_zf-TRAF	superfamily_SSF57850,HMMPfam_zf-C3HC4,HMMSmart_RING,PatternScan_ZF_RING_1,superfamily_Traf_like,HMMPfam_zf-TRAF,HMMSmart_MATH,HMMPfam_MATH	-	no_errors
TRPM6	140803	genome.wustl.edu	37	9	77423061	77423061	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	77423061	77423061	G	T	SNP	TRPM6	NM_017662	human	genbank	57_37b	-1	validated	silent	c.1527	p.T509	0.013	NULL	HMMPfam_Ion_trans,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00811,HMMPfam_Alpha_kinase	-	no_errors
WDR62	284403	genome.wustl.edu	37	19	36584983	36584983	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36584983	36584983	G	A	SNP	WDR62	NM_001083961	human	genbank	57_37b	+1	validated	missense	c.2384	p.G795E	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
ZBTB17	7709	genome.wustl.edu	37	1	16268903	16268904	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16268903	16268904	-	T	INS	ZBTB17	NM_003443	human	genbank	57_37b	-1	validated	frame_shift_ins	c.2051_2050	p.G684fs	1.000:1.000	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF227	7770	genome.wustl.edu	37	19	44738970	44738970	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	44738970	44738970	G	A	SNP	ZNF227	NM_182490	human	genbank	57_37b	+1	provisional	silent	c.387	p.R129	0.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
