Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABL1	25	genome.wustl.edu	37	9	133755477	133755477	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	133755477	133755477	C	A	SNP	ABL1	NM_007313	human	genbank	57_37b	+1	reviewed	missense	c.1503	p.D501E	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_F_actin_bind,HMMSmart_SM00808	-	no_errors
ADAMTS18	170692	genome.wustl.edu	37	16	77389899	77389903	+	Frame_Shift_Del	DEL	GGTCA	GGTCA	-	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	GGTCA	GGTCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	77389899	77389903	GGTCA	-	DEL	ADAMTS18	NM_199355	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1398_1394	p.L465fs	0.000:0.961:0.996:0.994:1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	(deletion:cds_exon[77389837,77389974])	no_errors
ADAMTS18	170692	genome.wustl.edu	37	16	77389899	77389903	+	Frame_Shift_Del	DEL	GGTCA	GGTCA	-	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-11B-21W-A100-09	GGTCA	GGTCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	77389899	77389903	GGTCA	-	DEL	ADAMTS18	NM_199355	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1398_1394	p.L465fs	0.000:0.961:0.996:0.994:1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	(deletion:cds_exon[77389837,77389974])	no_errors
AFF2	2334	genome.wustl.edu	37	X	147743942	147743942	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	147743942	147743942	G	T	SNP	AFF2	NM_002025	human	genbank	57_37b	+1	reviewed	nonsense	c.694	p.E232*	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
AFF2	2334	genome.wustl.edu	37	X	147743942	147743942	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-11B-21W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	147743942	147743942	G	T	SNP	AFF2	NM_002025	human	genbank	57_37b	+1	reviewed	nonsense	c.694	p.E232*	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
ATXN1	6310	genome.wustl.edu	37	6	16328222	16328222	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	16328222	16328222	G	A	SNP	ATXN1	NM_000332	human	genbank	57_37b	-1	reviewed	missense	c.320	p.A107V	0.998	NULL	superfamily_AXH domain,HMMSmart_SM00536,HMMPfam_AXH	-	no_errors
C4orf10	317648	genome.wustl.edu	37	4	2952750	2952750	+	RNA	SNP	C	C	G	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	2952750	2952750	C	G	SNP	C4orf10	NR_015453	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.004	-	-	-	no_errors
CSMD2	114784	genome.wustl.edu	37	1	34042946	34042946	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	34042946	34042946	C	T	SNP	CSMD2	NM_052896	human	genbank	57_37b	-1	validated	missense	c.7532	p.R2511Q	1.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC	-	no_errors
DMD	1756	genome.wustl.edu	37	X	32662397	32662397	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	32662397	32662397	G	A	SNP	DMD	NM_004006	human	genbank	57_37b	-1	reviewed	missense	c.1183	p.R395W	0.989	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_t-snare proteins,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Prefoldin	-	no_errors
FAT3	120114	genome.wustl.edu	37	11	92531859	92531859	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	92531859	92531859	C	T	SNP	FAT3	NM_001008781	human	genbank	57_37b	+1	validated	silent	c.5680	p.L1894	0.833	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
GIMAP8	155038	genome.wustl.edu	37	7	150164402	150164402	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150164402	150164402	A	G	SNP	GIMAP8	NM_175571	human	genbank	57_37b	+1	reviewed	missense	c.616	p.T206A	0.000	HMMPfam_AIG1	superfamily_SSF52540,HMMPfam_AIG1	-	no_errors
GPI	2821	genome.wustl.edu	37	19	34870465	34870465	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	34870465	34870465	A	G	SNP	GPI	NM_000175	human	genbank	57_37b	+1	reviewed	missense	c.748	p.T250A	1.000	superfamily_SSF53697,HMMPfam_PGI	superfamily_SSF53697,HMMPfam_PGI,PatternScan_P_GLUCOSE_ISOMERASE_1,PatternScan_P_GLUCOSE_ISOMERASE_2	-	no_errors
HIST1H2AD	3013	genome.wustl.edu	37	6	26199318	26199318	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26199318	26199318	G	A	SNP	HIST1H2AD	NM_021065	human	genbank	57_37b	-1	reviewed	silent	c.154	p.L52	1.000	superfamily_Histone-fold,HMMSmart_H2A,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_H2A,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors
IQCE	23288	genome.wustl.edu	37	7	2644519	2644519	+	Missense_Mutation	SNP	C	C	T	rs2293404	byCluster;byFrequency;by1000genomes	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-11B-21W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2644519	2644519	C	T	SNP	IQCE	NM_152558	human	genbank	57_37b	+1	validated	missense	c.1637	p.A546V	0.297	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ	-	
KCNT1	57582	genome.wustl.edu	37	9	138683996	138683997	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-11B-21W-A100-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	138683996	138683997	AC	-	DEL	KCNT1	NM_020822	human	genbank	57_37b	+1	validated	frame_shift_del	c.3760_3761	p.Q1255fs	1.000:1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans_2,superfamily_NAD(P)-bd,HMMPfam_BK_channel_a	(deletion:cds_exon[138683887,138684007])	no_errors
KIF4A	24137	genome.wustl.edu	37	X	69623828	69623828	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	69623828	69623828	A	T	SNP	KIF4A	NM_012310	human	genbank	57_37b	+1	validated	missense	c.2734	p.I912L	1.000	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
LPIN2	9663	genome.wustl.edu	37	18	2939590	2939594	+	Frame_Shift_Del	DEL	TGGGG	TGGGG	-	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	TGGGG	TGGGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	2939590	2939594	TGGGG	-	DEL	LPIN2	NM_014646	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.710_706	p.P236fs	0.487:0.458:0.340:0.320:0.041	NULL	HMMPfam_Lipin_N,superfamily_SSF56784,HMMPfam_LNS2,HMMSmart_LNS2	(deletion:cds_exon[2939478,2939601])	no_errors
LPIN2	9663	genome.wustl.edu	37	18	2939590	2939594	+	Frame_Shift_Del	DEL	TGGGG	TGGGG	-	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-11B-21W-A100-09	TGGGG	TGGGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	2939590	2939594	TGGGG	-	DEL	LPIN2	NM_014646	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.710_706	p.P236fs	0.487:0.458:0.340:0.320:0.041	NULL	HMMPfam_Lipin_N,superfamily_SSF56784,HMMPfam_LNS2,HMMSmart_LNS2	(deletion:cds_exon[2939478,2939601])	no_errors
MKRN3	7681	genome.wustl.edu	37	15	23811294	23811294	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23811294	23811294	C	T	SNP	MKRN3	NM_005664	human	genbank	57_37b	+1	reviewed	missense	c.365	p.S122F	0.000	NULL	HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
MMP27	64066	genome.wustl.edu	37	11	102575447	102575447	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	102575447	102575447	C	G	SNP	MMP27	NM_022122	human	genbank	57_37b	-1	reviewed	missense	c.162	p.K54N	0.006	HMMPfam_PG_binding_1,superfamily_PGBD-like	"HMMPfam_PG_binding_1,superfamily_PGBD-like,PatternScan_CYSTEINE_SWITCH,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120,PatternScan_HEMOPEXIN"	-	no_errors
NLRP7	199713	genome.wustl.edu	37	19	55450913	55450913	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55450913	55450913	G	A	SNP	NLRP7	NM_001127255	human	genbank	57_37b	-1	reviewed	missense	c.1274	p.A425V	0.000	NULL	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
NOS1	4842	genome.wustl.edu	37	12	117723956	117723956	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	117723956	117723956	G	A	SNP	NOS1	NM_000620	human	genbank	57_37b	-1	reviewed	missense	c.1243	p.R415W	0.997	superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_NO_synthase	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	-	no_errors
OR2V2	285659	genome.wustl.edu	37	5	180582416	180582416	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	180582416	180582416	G	C	SNP	OR2V2	NM_206880	human	genbank	57_37b	+1	provisional	missense	c.474	p.L158F	0.347	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PCDHGB3	56102	genome.wustl.edu	37	5	140750987	140750987	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140750987	140750987	C	A	SNP	PCDHGB3	NM_018924	human	genbank	57_37b	+1	reviewed	missense	c.1026	p.D342E	1.000	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	HMMSmart_SM00112,superfamily_Cadherin-like,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCDHGB3	56102	genome.wustl.edu	37	5	140751317	140751317	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140751317	140751317	C	T	SNP	PCDHGB3	NM_018924	human	genbank	57_37b	+1	reviewed	silent	c.1356	p.F452	0.913	superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PRKRA	8575	genome.wustl.edu	37	2	179300974	179300974	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179300974	179300974	A	T	SNP	PRKRA	NM_003690	human	genbank	57_37b	-1	reviewed	missense	c.682	p.L228I	0.998	superfamily_dsRNA-binding domain-like	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	-	no_errors
RLF	6018	genome.wustl.edu	37	1	40654738	40654738	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	40654738	40654738	A	G	SNP	RLF	NM_012421	human	genbank	57_37b	+1	validated	silent	c.249	p.Q83	0.998	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,superfamily_SSF57667	-	no_errors
RPL29	6159	genome.wustl.edu	37	3	52027853	52027854	+	In_Frame_Ins	INS	-	-	CCTTGG	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-11B-21W-A100-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52027853	52027854	-	CCTTGG	INS	RPL29	NM_000992	human	genbank	57_37b	-1	reviewed	in_frame_ins	c.392_391	p.131in_frame_insAK	0.127:0.483	NULL	HMMPfam_Ribosomal_L29e	-	no_errors
RPS6KB2	6199	genome.wustl.edu	37	11	67196544	67196544	+	Missense_Mutation	SNP	C	C	G	rs917570	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-11B-21W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67196544	67196544	C	G	SNP	RPS6KB2	ENST00000420069	human	ensembl	57_37b	+1	known	missense	c.43	p.L15V	0.000	NULL	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	-	
SCN2A	6326	genome.wustl.edu	37	2	166246050	166246050	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	166246050	166246050	A	T	SNP	SCN2A	NM_001040142	human	genbank	57_37b	+1	reviewed	missense	c.5734	p.I1912F	1.000	HMMSmart_SM00015,HMMPfam_IQ	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors
SCN7A	6332	genome.wustl.edu	37	2	167298131	167298131	+	Missense_Mutation	SNP	G	G	T	rs72886662	byCluster;by1000genomes	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	167298131	167298131	G	T	SNP	SCN7A	NM_002976	human	genbank	57_37b	-1	validated	missense	c.1932	p.F644L	0.987	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc	-	
SEPHS1	22929	genome.wustl.edu	37	10	13386865	13386865	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	13386865	13386865	G	A	SNP	SEPHS1	NM_012247	human	genbank	57_37b	-1	reviewed	missense	c.86	p.T29I	1.000	NULL	superfamily_PurM N-terminal domain-like,HMMPfam_AIRS,superfamily_PurM C-terminal domain-like,HMMPfam_AIRS_C	-	no_errors
SLC1A4	6509	genome.wustl.edu	37	2	65245352	65245352	+	Silent	SNP	G	G	A	rs34416635	byCluster	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	65245352	65245352	G	A	SNP	SLC1A4	NM_003038	human	genbank	57_37b	+1	validated	silent	c.1182	p.A394	0.985	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_2	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2	-	
SNCAIP	9627	genome.wustl.edu	37	5	121786792	121786792	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	121786792	121786792	C	A	SNP	SNCAIP	NM_005460	human	genbank	57_37b	+1	reviewed	silent	c.2250	p.P750	1.000	NULL	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	-	no_errors
TFAP2C	7022	genome.wustl.edu	37	20	55208476	55208476	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	55208476	55208476	G	A	SNP	TFAP2C	NM_003222	human	genbank	57_37b	+1	reviewed	missense	c.654	p.M218I	0.994	NULL	HMMPfam_TF_AP-2	-	no_errors
TMEM106B	54664	genome.wustl.edu	37	7	12258148	12258148	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	12258148	12258148	G	A	SNP	TMEM106B	NM_001134232	human	genbank	57_37b	+1	validated	splice_site	c.281+1	e2+1	1.000	-	-	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578203	7578203	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578203	7578203	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.646	p.V216M	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
UNC13C	440279	genome.wustl.edu	37	15	54306670	54306670	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	54306670	54306670	A	G	SNP	UNC13C	NM_001080534	human	genbank	57_37b	+1	provisional	missense	c.1570	p.T524A	0.934	NULL	superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-	no_errors
VWF	7450	genome.wustl.edu	37	12	6134806	6134806	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6134806	6134806	C	A	SNP	VWF	NM_000552	human	genbank	57_37b	-1	reviewed	silent	c.3162	p.T1054	0.587	HMMPfam_C8	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_VWC,PatternScan_VWFC_1,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors
WFS1	7466	genome.wustl.edu	37	4	6304133	6304133	+	Missense_Mutation	SNP	G	G	A	rs71532874	byCluster;by1000genomes	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-11B-21W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	6304133	6304133	G	A	SNP	WFS1	NM_006005	human	genbank	57_37b	+1	reviewed	missense	c.2611	p.V871M	0.997	NULL	NULL	-	
ZEB2	9839	genome.wustl.edu	37	2	145147116	145147116	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	145147116	145147116	C	T	SNP	ZEB2	NM_014795	human	genbank	57_37b	-1	reviewed	missense	c.3547	p.E1183K	1.000	NULL	PatternScan_HOMEOBOX_1,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX	-	no_errors
