Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABAT	18	genome.wustl.edu	37	16	8829606	8829606	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	8829606	8829606	A	G	SNP	ABAT	NM_000663	human	genbank	57_37b	+1	reviewed	missense	c.10	p.M4V	0.968	NULL	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_3,PatternScan_AA_TRANSFER_CLASS_3	-	no_errors
ABCA13	154664	genome.wustl.edu	37	7	48284232	48284232	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	48284232	48284232	T	C	SNP	ABCA13	NM_152701	human	genbank	57_37b	+1	reviewed	missense	c.1322	p.L441P	0.025	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-	no_errors
AGL	178	genome.wustl.edu	37	1	100376361	100376361	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	100376361	100376361	A	-	DEL	AGL	NM_000028	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.3794	p.S1266fs	1.000	HMMPfam_GDE_C,superfamily_Six-hairpin glycosidases	superfamily_(Trans)glycosidases,HMMPfam_GDE_C,superfamily_Six-hairpin glycosidases	(deletion:cds_exon[100376268,100376403])	no_errors
AGMAT	79814	genome.wustl.edu	37	1	15905362	15905362	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	15905362	15905362	G	A	SNP	AGMAT	NM_024758	human	genbank	57_37b	-1	validated	missense	c.712	p.R238W	0.767	superfamily_SSF52768,HMMPfam_Arginase	superfamily_SSF52768,HMMPfam_Arginase,PatternScan_ARGINASE_1,PatternScan_ARGINASE_2,PatternScan_ARGINASE_3	-	no_errors
ALG11	440138	genome.wustl.edu	37	13	52586563	52586563	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	52586563	52586563	C	T	SNP	ALG11	NM_001004127	human	genbank	57_37b	+1	provisional	silent	c.9	p.A3	0.000	NULL	superfamily_SSF53756,HMMPfam_Glycos_transf_1	-	no_errors
C1orf27	54953	genome.wustl.edu	37	1	186363119	186363119	+	Missense_Mutation	SNP	C	C	G	rs12084264	byCluster;byFrequency;by1000genomes	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	186363119	186363119	C	G	SNP	C1orf27	NM_017847	human	genbank	57_37b	+1	validated	missense	c.752	p.S251C	0.980	NULL	NULL	-	
C6orf27	80737	genome.wustl.edu	37	6	31740805	31740805	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31740805	31740805	C	T	SNP	C6orf27	NM_025258	human	genbank	57_37b	-1	validated	missense	c.1013	p.R338H	0.741	HMMSmart_VWA,superfamily_SSF53300	HMMSmart_VWA,superfamily_SSF53300	-	no_errors
C6orf81	221481	genome.wustl.edu	37	6	35716413	35716413	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	35716413	35716413	C	T	SNP	C6orf81	NM_145028	human	genbank	57_37b	+1	predicted	silent	c.870	p.N290	0.000	HMMPfam_DUF634,superfamily_ARM-type_fold	HMMPfam_DUF634,superfamily_ARM-type_fold	-	no_errors
CARM1	10498	genome.wustl.edu	37	19	11024609	11024609	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11024609	11024609	G	-	DEL	CARM1	NM_199141	human	genbank	57_37b	+1	validated	frame_shift_del	c.726	p.E243fs	1.000	superfamily_SSF53335	superfamily_SSF53335,HMMPfam_PrmA	(deletion:cds_exon[11024553,11024730])	no_errors
CXorf42	158801	genome.wustl.edu	37	X	119374159	119374159	+	RNA	SNP	C	C	A	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	119374159	119374159	C	A	SNP	CXorf42	NR_027131	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.200	-	-	-	no_errors
DNMT1	1786	genome.wustl.edu	37	19	10249146	10249146	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10249146	10249146	C	G	SNP	DNMT1	NM_001130823	human	genbank	57_37b	-1	reviewed	missense	c.4084	p.D1362H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_DMAP_binding,HMMPfam_zf-CXXC,HMMPfam_BAH,HMMSmart_SM00439,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_1,PatternScan_C5_MTASE_2	-	no_errors
DPY19L3	147991	genome.wustl.edu	37	19	32949349	32949349	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	32949349	32949349	A	G	SNP	DPY19L3	NM_207325	human	genbank	57_37b	+1	validated	missense	c.1256	p.Y419C	1.000	HMMPfam_DUF2211	HMMPfam_DUF2211	-	no_errors
EIF2C1	26523	genome.wustl.edu	37	1	36358236	36358236	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	36358236	36358236	G	A	SNP	EIF2C1	NM_012199	human	genbank	57_37b	+1	reviewed	silent	c.288	p.K96	1.000	superfamily_PAZ domain	superfamily_PAZ domain,HMMPfam_DUF1785,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors
FBXO41	150726	genome.wustl.edu	37	2	73491166	73491166	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	73491166	73491166	C	-	DEL	FBXO41	NM_001080410	human	genbank	57_37b	-1	validated	frame_shift_del	c.2005	p.A669fs	1.000	superfamily_F-box domain,superfamily_RNI-like	HMMPfam_zf-C2H2,HMMPfam_F-box,superfamily_F-box domain,superfamily_RNI-like	(deletion:cds_exon[73491066,73491181])	no_errors
GPT2	84706	genome.wustl.edu	37	16	46960909	46960909	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	46960909	46960909	G	A	SNP	GPT2	NM_133443	human	genbank	57_37b	+1	validated	missense	c.1441	p.G481S	1.000	superfamily_PLP-dependent transferases	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2	-	no_errors
GRLF1	2909	genome.wustl.edu	37	19	47424158	47424158	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47424158	47424158	C	G	SNP	GRLF1	NM_004491	human	genbank	57_37b	+1	reviewed	nonsense	c.2226	p.Y742*	0.932	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00441,HMMPfam_FF,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
HPS6	79803	genome.wustl.edu	37	10	103826282	103826282	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	103826282	103826282	G	T	SNP	HPS6	NM_024747	human	genbank	57_37b	+1	reviewed	missense	c.1051	p.D351Y	1.000	NULL	NULL	-	no_errors
IL23R	149233	genome.wustl.edu	37	1	67648572	67648572	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	67648572	67648572	A	C	SNP	IL23R	NM_144701	human	genbank	57_37b	+1	reviewed	missense	c.421	p.N141H	0.985	superfamily_Fibronectin type III,HMMPfam_fn3	superfamily_Fibronectin type III,HMMPfam_fn3	-	no_errors
KCNA1	3736	genome.wustl.edu	37	12	5021358	5021358	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	5021358	5021358	G	A	SNP	KCNA1	NM_000217	human	genbank	57_37b	+1	reviewed	missense	c.814	p.E272K	1.000	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	-	no_errors
LPHN1	22859	genome.wustl.edu	37	19	14262349	14262349	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14262349	14262349	A	-	DEL	LPHN1	NM_001008701	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.3761	p.L1254fs	1.000	HMMPfam_Latrophilin	HMMPfam_Gal_Lectin,HMMPfam_OLF,HMMSmart_SM00284,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_Latrophilin	(deletion:cds_exon[14261685,14262427])	no_errors
LRRC8D	55144	genome.wustl.edu	37	1	90400639	90400639	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	90400639	90400639	G	A	SNP	LRRC8D	NM_001134479	human	genbank	57_37b	+1	validated	missense	c.2012	p.R671H	1.000	superfamily_SSF52058,HMMPfam_LRR_1	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP	-	no_errors
MAGEC2	51438	genome.wustl.edu	37	X	141291740	141291740	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	141291740	141291740	C	T	SNP	MAGEC2	NM_016249	human	genbank	57_37b	-1	reviewed	missense	c.34	p.V12I	0.000	NULL	HMMPfam_MAGE	-	no_errors
MAML3	55534	genome.wustl.edu	37	4	140811230	140811230	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	140811230	140811230	G	A	SNP	MAML3	NM_018717	human	genbank	57_37b	-1	validated	missense	c.1360	p.P454S	0.982	NULL	HMMPfam_MamL-1	-	no_errors
MAP2K4	6416	genome.wustl.edu	37	17	12028665	12028665	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	12028665	12028665	G	T	SNP	MAP2K4	NM_003010	human	genbank	57_37b	+1	reviewed	missense	c.868	p.V290F	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
NEB	4703	genome.wustl.edu	37	2	152362016	152362017	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152362016	152362017	CT	-	DEL	NEB	NM_004543	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.18615_18614	p.K6205fs	1.000:1.000	HMMSmart_SM00227,HMMPfam_Nebulin	HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	(deletion:cds_exon[152361992,152362084])	no_errors
PCDHGA2	56113	genome.wustl.edu	37	5	140720425	140720425	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140720425	140720425	G	A	SNP	PCDHGA2	NM_018915	human	genbank	57_37b	+1	reviewed	silent	c.1887	p.A629	0.005	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMSmart_SM00112,superfamily_Cadherin-like,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
POTEE	0	genome.wustl.edu	37	2	131976219	131976219	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	131976219	131976219	G	A	SNP	POTEE	NM_001083538	human	genbank	57_37b	+1	validated	missense	c.244	p.A82T	0.002	NULL	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
POU3F2	5454	genome.wustl.edu	37	6	99284014	99284014	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	99284014	99284014	C	G	SNP	POU3F2	NM_005604	human	genbank	57_37b	+1	validated	missense	c.1265	p.A422G	1.000	NULL	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
RELL1	0	genome.wustl.edu	37	4	37640083	37640083	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	37640083	37640083	C	A	SNP	RELL1	NM_001085399	human	genbank	57_37b	-1	validated	silent	c.429	p.L143	0.013	NULL	NULL	-	no_errors
SLC1A3	6507	genome.wustl.edu	37	5	36679791	36679791	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	36679791	36679791	G	T	SNP	SLC1A3	NM_004172	human	genbank	57_37b	+1	reviewed	missense	c.923	p.G308V	0.989	HMMPfam_SDF	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2	-	no_errors
SLC27A5	10998	genome.wustl.edu	37	19	59022779	59022780	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	59022779	59022780	-	C	INS	SLC27A5	NM_012254	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.544_543	p.S181fs	0.000:0.000	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors
SPATS2L	26010	genome.wustl.edu	37	2	201342616	201342616	+	Silent	SNP	C	C	T	rs117996228	by1000genomes	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	201342616	201342616	C	T	SNP	SPATS2L	NM_001100422	human	genbank	57_37b	+1	validated	silent	c.1539	p.H513	0.027	NULL	HMMPfam_DUF1387	-	
TNFRSF11B	4982	genome.wustl.edu	37	8	119964052	119964052	+	Missense_Mutation	SNP	G	G	C	rs2073618	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	119964052	119964052	G	C	SNP	TNFRSF11B	NM_002546	human	genbank	57_37b	-1	reviewed	missense	c.9	p.N3K	0.961	NULL	HMMSmart_SM00208,superfamily_TNF receptor-like,HMMPfam_TNFR_c6,PatternScan_TNFR_NGFR_1,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	
TP53	7157	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578406	7578406	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.524	p.R175H	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	
TRPC4AP	26133	genome.wustl.edu	37	20	33598008	33598010	+	In_Frame_Del	DEL	GCT	GCT	-	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	33598008	33598010	GCT	-	DEL	TRPC4AP	NM_015638	human	genbank	57_37b	-1	validated	in_frame_del	c.1493_1491	p.EA497in_frame_delD	1.000:1.000:0.697	NULL	NULL	(deletion:cds_exon[33597990,33598091])	no_errors
TTN	7273	genome.wustl.edu	37	2	179639817	179639817	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179639817	179639817	C	G	SNP	TTN	NM_133379	human	genbank	57_37b	-1	reviewed	missense	c.6621	p.W2207C	1.000	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_Titin_Z,HMMPfam_ig,PatternScan_IG_MHC,PatternScan_THIOL_PROTEASE_HIS	-	no_errors
USP38	84640	genome.wustl.edu	37	4	144116875	144116875	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	144116875	144116875	T	G	SNP	USP38	NM_032557	human	genbank	57_37b	+1	validated	missense	c.825	p.I275M	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
WSCD1	23302	genome.wustl.edu	37	17	6021383	6021383	+	Missense_Mutation	SNP	A	A	G	rs114131090	by1000genomes	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	6021383	6021383	A	G	SNP	WSCD1	NM_015253	human	genbank	57_37b	+1	validated	missense	c.1250	p.E417G	1.000	superfamily_SSF52540	HMMSmart_WSC,HMMPfam_WSC,superfamily_SSF52540	-	
ZIC2	7546	genome.wustl.edu	37	13	100635008	100635010	+	In_Frame_Del	DEL	CCA	CCA	-	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	CCA	CCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	100635008	100635010	CCA	-	DEL	ZIC2	NM_007129	human	genbank	57_37b	+1	reviewed	in_frame_del	c.690_692	p.H234in_frame_del	0.990:0.999:1.000	NULL	HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[100634319,100635393])	no_errors
ZNF646	9726	genome.wustl.edu	37	16	31090899	31090899	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31090899	31090899	C	T	SNP	ZNF646	NM_014699	human	genbank	57_37b	+1	validated	missense	c.3254	p.S1085F	0.997	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
