Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ANGPT4	51378	genome.wustl.edu	37	20	865878	865878	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	865878	865878	C	T	SNP	ANGPT4	NM_015985	human	genbank	57_37b	-1	reviewed	silent	c.678	p.T226	0.971	NULL	HMMSmart_FBG,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen_a/b/g_C,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors
ATAD2	29028	genome.wustl.edu	37	8	124381414	124381414	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124381414	124381414	T	C	SNP	ATAD2	NM_014109	human	genbank	57_37b	-1	reviewed	silent	c.933	p.K311	1.000	HMMPfam_YL1	HMMPfam_YL1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	-	no_errors
BAT2L1	0	genome.wustl.edu	37	9	134312031	134312031	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	134312031	134312031	G	A	SNP	BAT2L1	NM_013318	human	genbank	57_37b	+1	validated	silent	c.318	p.P106	1.000	HMMPfam_BAT2_N	HMMPfam_BAT2_N	-	no_errors
C8orf34	116328	genome.wustl.edu	37	8	69434116	69434116	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	69434116	69434116	C	T	SNP	C8orf34	NM_052958	human	genbank	57_37b	+1	predicted	missense	c.515	p.P172L	0.998	NULL	NULL	-	no_errors
CA9	768	genome.wustl.edu	37	9	35676375	35676375	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35676375	35676375	G	T	SNP	CA9	NM_001216	human	genbank	57_37b	+1	reviewed	missense	c.829	p.A277S	0.874	superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase	superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1	-	no_errors
CCDC146	57639	genome.wustl.edu	37	7	76871096	76871096	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	76871096	76871096	G	C	SNP	CCDC146	NM_020879	human	genbank	57_37b	+1	validated	missense	c.328	p.D110H	0.951	NULL	NULL	-	no_errors
CCL4L2	388372	genome.wustl.edu	37	17	34641454	34641454	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	34641454	34641454	C	T	SNP	CCL4L2	NM_207007	human	genbank	57_37b	+1	reviewed	nonsense	c.196	p.Q66*	0.873	HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CC	HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CC	-	no_errors
CCL4L2	388372	genome.wustl.edu	37	17	34641454	34641454	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	34641454	34641454	C	T	SNP	CCL4L2	NM_207007	human	genbank	57_37b	+1	reviewed	nonsense	c.196	p.Q66*	0.873	HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CC	HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CC	-	no_errors
CD22	933	genome.wustl.edu	37	19	35827245	35827245	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	35827245	35827245	G	A	SNP	CD22	NM_001771	human	genbank	57_37b	+1	validated	splice_site	c.718+1	e3+1	1.000	-	-	-	no_errors
CDC45L	8318	genome.wustl.edu	37	22	19504407	19504407	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	19504407	19504407	G	A	SNP	CDC45L	NM_003504	human	genbank	57_37b	+1	reviewed	missense	c.1627	p.D543N	1.000	HMMPfam_CDC45	HMMPfam_CDC45	-	no_errors
CDH26	60437	genome.wustl.edu	37	20	58571003	58571003	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	58571003	58571003	C	G	SNP	CDH26	NM_177980	human	genbank	57_37b	+1	reviewed	missense	c.1782	p.I594M	0.072	superfamily_Cadherin,HMMPfam_Cadherin	superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
CHD6	84181	genome.wustl.edu	37	20	40126068	40126068	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	40126068	40126068	G	A	SNP	CHD6	NM_032221	human	genbank	57_37b	-1	reviewed	nonsense	c.1048	p.R350*	1.000	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	-	no_errors
CHD6	84181	genome.wustl.edu	37	20	40126068	40126068	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	40126068	40126068	G	A	SNP	CHD6	NM_032221	human	genbank	57_37b	-1	reviewed	nonsense	c.1048	p.R350*	1.000	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	-	no_errors
CHSY3	337876	genome.wustl.edu	37	5	129520729	129520729	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	129520729	129520729	G	A	SNP	CHSY3	NM_175856	human	genbank	57_37b	+1	validated	missense	c.1894	p.D632N	1.000	HMMPfam_CHGN,superfamily_SSF53448	HMMPfam_CHGN,superfamily_SSF53448	-	no_errors
DGKB	1607	genome.wustl.edu	37	7	14216525	14216525	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	14216525	14216525	C	T	SNP	DGKB	NM_004080	human	genbank	57_37b	-1	reviewed	splice_site	c.2247-1	e24-1	1.000	-	-	-	no_errors
DYRK3	8444	genome.wustl.edu	37	1	206820860	206820860	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	206820860	206820860	G	T	SNP	DYRK3	NM_003582	human	genbank	57_37b	+1	reviewed	missense	c.317	p.S106I	0.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ENSG00000245549	0	genome.wustl.edu	37	1	16950470	16950470	+	RNA	SNP	C	C	T	rs12144467	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16950470	16950470	C	T	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.996	-	-	-	
FAM160A2	84067	genome.wustl.edu	37	11	6239359	6239359	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6239359	6239359	T	C	SNP	FAM160A2	NM_032127	human	genbank	57_37b	-1	validated	missense	c.1499	p.D500G	1.000	NULL	HMMPfam_RAI16-like	-	no_errors
FAM47B	170062	genome.wustl.edu	37	X	34962578	34962578	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	34962578	34962578	G	A	SNP	FAM47B	NM_152631	human	genbank	57_37b	+1	predicted	missense	c.1630	p.G544R	0.001	NULL	NULL	-	no_errors
FAM75A3	727830	genome.wustl.edu	37	9	40705542	40705542	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	40705542	40705542	C	T	SNP	FAM75A3	NM_001083124	human	genbank	57_37b	+1	predicted	missense	c.3199	p.R1067W	0.000	NULL	NULL	-	no_errors
FGL2	10875	genome.wustl.edu	37	7	76826243	76826243	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	76826243	76826243	C	G	SNP	FGL2	NM_006682	human	genbank	57_37b	-1	reviewed	missense	c.673	p.E225Q	1.000	HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like	HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors
GIMAP6	474344	genome.wustl.edu	37	7	150324841	150324841	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150324841	150324841	G	A	SNP	GIMAP6	NM_024711	human	genbank	57_37b	-1	reviewed	missense	c.845	p.A282V	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AIG1	-	no_errors
GLRA2	2742	genome.wustl.edu	37	X	14627177	14627177	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	14627177	14627177	G	C	SNP	GLRA2	NM_001118885	human	genbank	57_37b	+1	reviewed	missense	c.780	p.Q260H	1.000	superfamily_Neurotransmitter-gated ion-channel transmembrane pore	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors
GPR116	221395	genome.wustl.edu	37	6	46830787	46830787	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	46830787	46830787	C	T	SNP	GPR116	NM_001098518	human	genbank	57_37b	-1	validated	silent	c.2037	p.P679	0.211	NULL	PatternScan_EGF_2,superfamily_SEA domain,HMMPfam_SEA,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
GRXCR2	0	genome.wustl.edu	37	5	145239466	145239466	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	145239466	145239466	G	A	SNP	GRXCR2	NM_001080516	human	genbank	57_37b	-1	provisional	missense	c.577	p.P193S	0.293	NULL	NULL	-	no_errors
HOMER1	9456	genome.wustl.edu	37	5	78742884	78742884	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	78742884	78742884	G	C	SNP	HOMER1	NM_004272	human	genbank	57_37b	-1	validated	missense	c.379	p.P127A	1.000	superfamily_PH domain-like	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like	-	no_errors
HOOK1	51361	genome.wustl.edu	37	1	60328544	60328544	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	60328544	60328544	G	A	SNP	HOOK1	ENST00000371208	human	ensembl	57_37b	+1	known	missense	c.1621	p.E541K	1.000	HMMPfam_HOOK	HMMPfam_HOOK,superfamily_Prefoldin	-	no_errors
HS6ST2	90161	genome.wustl.edu	37	X	131762517	131762517	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	131762517	131762517	G	A	SNP	HS6ST2	NM_001077188	human	genbank	57_37b	-1	reviewed	missense	c.1672	p.R558C	1.000	HMMPfam_HS6ST	HMMPfam_HS6ST	-	no_errors
IL12B	3593	genome.wustl.edu	37	5	158745844	158745844	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	158745844	158745844	A	C	SNP	IL12B	NM_002187	human	genbank	57_37b	-1	reviewed	missense	c.755	p.V252G	0.999	PatternScan_HEMATOPO_REC_L_F3,superfamily_FN_III-like,HMMPfam_fn3	superfamily_SSF48726,HMMSmart_IGc2,superfamily_FN_III-like,HMMPfam_IL12p40_C,PatternScan_HEMATOPO_REC_L_F3,HMMPfam_fn3	-	no_errors
IQSEC2	23096	genome.wustl.edu	37	X	53283878	53283878	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	53283878	53283878	G	A	SNP	IQSEC2	NM_001111125	human	genbank	57_37b	-1	validated	missense	c.1235	p.S412L	1.000	NULL	superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,superfamily_SSF50729,HMMSmart_PH	-	no_errors
KCNA4	3739	genome.wustl.edu	37	11	30033717	30033717	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	30033717	30033717	C	T	SNP	KCNA4	NM_002233	human	genbank	57_37b	-1	reviewed	missense	c.509	p.R170H	1.000	NULL	HMMPfam_K_channel_TID,superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
LHX6	26468	genome.wustl.edu	37	9	124971974	124971974	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	124971974	124971974	C	T	SNP	LHX6	NM_014368	human	genbank	57_37b	-1	reviewed	silent	c.1077	p.V359	1.000	NULL	superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
LOC440419	440419	genome.wustl.edu	37	17	25749251	25749251	+	RNA	SNP	A	A	G	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	25749251	25749251	A	G	SNP	LOC440419	XR_040504	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.142	-	-	-	no_errors
METTL9	51108	genome.wustl.edu	37	16	21636383	21636383	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	21636383	21636383	G	C	SNP	METTL9	NM_016025	human	genbank	57_37b	+1	validated	missense	c.698	p.R233T	0.996	HMMPfam_DREV,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_DREV,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
MIOS	54468	genome.wustl.edu	37	7	7636043	7636043	+	Silent	SNP	A	A	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	7636043	7636043	A	T	SNP	MIOS	NM_019005	human	genbank	57_37b	+1	validated	silent	c.2352	p.R784	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320	-	no_errors
MOGAT3	346606	genome.wustl.edu	37	7	100839208	100839208	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100839208	100839208	C	T	SNP	MOGAT3	ENST00000379423	human	ensembl	57_37b	-1	known	missense	c.842	p.R281H	0.000	NULL	HMMPfam_DAGAT	-	no_errors
MRPS31	10240	genome.wustl.edu	37	13	41333178	41333178	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	41333178	41333178	C	G	SNP	MRPS31	NM_005830	human	genbank	57_37b	-1	reviewed	missense	c.505	p.D169H	1.000	NULL	NULL	-	no_errors
OR4A15	81328	genome.wustl.edu	37	11	55135676	55135676	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55135676	55135676	C	A	SNP	OR4A15	NM_001005275	human	genbank	57_37b	+1	provisional	missense	c.317	p.A106D	0.003	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PI3	5266	genome.wustl.edu	37	20	43804672	43804672	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	43804672	43804672	G	A	SNP	PI3	NM_002638	human	genbank	57_37b	+1	reviewed	missense	c.250	p.A84T	0.001	superfamily_Elafin-like,HMMPfam_WAP,HMMSmart_SM00217	PatternScan_SVP_I,HMMPfam_Cementoin,superfamily_Elafin-like,HMMPfam_WAP,HMMSmart_SM00217,PatternScan_4_DISULFIDE_CORE	-	no_errors
PLEKHF2	79666	genome.wustl.edu	37	8	96166776	96166776	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	96166776	96166776	T	C	SNP	PLEKHF2	NM_024613	human	genbank	57_37b	+1	provisional	silent	c.504	p.P168	0.996	HMMSmart_FYVE,HMMPfam_FYVE,superfamily_FYVE_PHD_ZnF	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_FYVE,HMMPfam_FYVE,superfamily_FYVE_PHD_ZnF	-	no_errors
PROSC	11212	genome.wustl.edu	37	8	37620221	37620221	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	37620221	37620221	G	A	SNP	PROSC	NM_007198	human	genbank	57_37b	+1	validated	missense	c.44	p.C15Y	0.795	superfamily_SSF51419,HMMPfam_Ala_racemase_N	superfamily_SSF51419,HMMPfam_Ala_racemase_N,PatternScan_UPF0001	-	no_errors
PXDN	7837	genome.wustl.edu	37	2	1652010	1652010	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	1652010	1652010	G	A	SNP	PXDN	NM_012293	human	genbank	57_37b	-1	validated	missense	c.3542	p.A1181V	0.736	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	-	no_errors
SEC24B	10427	genome.wustl.edu	37	4	110394171	110394171	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	110394171	110394171	T	G	SNP	SEC24B	NM_006323	human	genbank	57_37b	+1	reviewed	missense	c.889	p.L297V	0.697	NULL	PatternScan_MIP,superfamily_beta-sandwich domain of Sec23/24,superfamily_Zn-finger domain of Sec23/24,HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,superfamily_vWA-like,HMMPfam_Sec23_BS,superfamily_Helical domain of Sec23/24,HMMPfam_Sec23_helical,superfamily_C-terminal gelsolin-like domain of Sec23/24,HMMPfam_Gelsolin	-	no_errors
SKIL	6498	genome.wustl.edu	37	3	170078760	170078760	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	170078760	170078760	A	G	SNP	SKIL	NM_005414	human	genbank	57_37b	+1	validated	missense	c.641	p.N214S	1.000	HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain	HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain,superfamily_SAND domain-like,HMMPfam_c-SKI_SMAD_bind	-	no_errors
SPAG16	79582	genome.wustl.edu	37	2	214215282	214215282	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	214215282	214215282	G	A	SNP	SPAG16	NM_024532	human	genbank	57_37b	+1	validated	silent	c.675	p.P225	1.000	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
SPR	6697	genome.wustl.edu	37	2	73118645	73118645	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	73118645	73118645	C	T	SNP	SPR	NM_003124	human	genbank	57_37b	+1	reviewed	silent	c.765	p.H255	0.713	superfamily_NAD(P)-bd	superfamily_NAD(P)-bd,HMMPfam_adh_short	-	no_errors
THUMPD2	80745	genome.wustl.edu	37	2	39983082	39983082	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	39983082	39983082	C	T	SNP	THUMPD2	NM_025264	human	genbank	57_37b	-1	validated	missense	c.820	p.D274N	1.000	HMMPfam_UPF0020,superfamily_SSF53335	HMMPfam_THUMP,HMMPfam_UPF0020,superfamily_SSF53335	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577547	7577547	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577547	7577547	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.734	p.G245D	1.000	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TRAIP	10293	genome.wustl.edu	37	3	49878478	49878478	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49878478	49878478	C	A	SNP	TRAIP	NM_005879	human	genbank	57_37b	-1	reviewed	silent	c.645	p.R215	1.000	superfamily_Prefoldin	PatternScan_ZF_RING_1,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_Prefoldin	-	no_errors
USP34	9736	genome.wustl.edu	37	2	61417673	61417673	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	61417673	61417673	T	C	SNP	USP34	NM_014709	human	genbank	57_37b	-1	validated	missense	c.9709	p.M3237V	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
XPNPEP3	63929	genome.wustl.edu	37	22	41265020	41265020	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	41265020	41265020	C	T	SNP	XPNPEP3	NM_022098	human	genbank	57_37b	+1	validated	nonsense	c.82	p.Q28*	0.537	NULL	superfamily_Creatinase/prolidase N-terminal domain,HMMPfam_AMP_N,superfamily_Creatinase/aminopeptidase,HMMPfam_Peptidase_M24	-	no_errors
XPNPEP3	63929	genome.wustl.edu	37	22	41265020	41265020	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	41265020	41265020	C	T	SNP	XPNPEP3	NM_022098	human	genbank	57_37b	+1	validated	nonsense	c.82	p.Q28*	0.537	NULL	superfamily_Creatinase/prolidase N-terminal domain,HMMPfam_AMP_N,superfamily_Creatinase/aminopeptidase,HMMPfam_Peptidase_M24	-	no_errors
ZNF513	130557	genome.wustl.edu	37	2	27600657	27600657	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27600657	27600657	G	A	SNP	ZNF513	NM_144631	human	genbank	57_37b	-1	validated	missense	c.1381	p.R461C	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF536	9745	genome.wustl.edu	37	19	31038893	31038893	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	31038893	31038893	G	A	SNP	ZNF536	NM_014717	human	genbank	57_37b	+1	provisional	silent	c.2367	p.T789	0.999	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
