Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCB11	8647	genome.wustl.edu	37	2	169814622	169814622	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	169814622	169814622	A	C	SNP	ABCB11	NM_003742	human	genbank	57_37b	-1	reviewed	missense	c.2195	p.V732G	0.663	NULL	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ANGPT4	51378	genome.wustl.edu	37	20	896760	896760	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	896760	896760	C	T	SNP	ANGPT4	NM_015985	human	genbank	57_37b	-1	reviewed	missense	c.98	p.C33Y	0.004	NULL	HMMSmart_FBG,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen_a/b/g_C,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors
BCOR	54880	genome.wustl.edu	37	X	39937122	39937122	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	39937122	39937122	G	A	SNP	BCOR	NM_001123385	human	genbank	57_37b	-1	reviewed	missense	c.61	p.R21C	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
BID	637	genome.wustl.edu	37	22	18222887	18222887	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18222887	18222887	G	-	DEL	BID	ENST00000342111	human	ensembl	57_37b	-1	known	frame_shift_del	c.279	p.S93fs	0.000	HMMPfam_BID,superfamily_SSF56854	HMMPfam_BID,superfamily_SSF56854	(deletion:cds_exon[18222848,18222942])	no_errors
BMP3	651	genome.wustl.edu	37	4	81967479	81967479	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	81967479	81967479	C	T	SNP	BMP3	NM_001201	human	genbank	57_37b	+1	reviewed	missense	c.904	p.L302F	1.000	NULL	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors
BMP6	654	genome.wustl.edu	37	6	7845540	7845540	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	7845540	7845540	C	G	SNP	BMP6	NM_001718	human	genbank	57_37b	+1	reviewed	missense	c.832	p.Q278E	1.000	HMMPfam_TGFb_propeptide	HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors
BTBD10	84280	genome.wustl.edu	37	11	13410404	13410404	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	13410404	13410404	G	A	SNP	BTBD10	NM_032320	human	genbank	57_37b	-1	validated	missense	c.1402	p.P468S	1.000	NULL	superfamily_BTB/POZ_fold,HMMSmart_BTB	-	no_errors
C12orf39	80763	genome.wustl.edu	37	12	21679844	21679844	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	21679844	21679844	A	G	SNP	C12orf39	NM_030572	human	genbank	57_37b	+1	provisional	missense	c.31	p.T11A	0.000	NULL	NULL	-	no_errors
C9orf98	158067	genome.wustl.edu	37	9	135702351	135702351	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	135702351	135702351	G	T	SNP	C9orf98	NM_152572	human	genbank	57_37b	-1	validated	missense	c.647	p.A216D	0.021	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ADK,superfamily_Microbial and mitochondrial ADK insert ""zinc finger"" domain"	-	no_errors
CASP2	835	genome.wustl.edu	37	7	142991361	142991361	+	Missense_Mutation	SNP	G	G	T	rs4647297	byCluster;byFrequency;by1000genomes	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	142991361	142991361	G	T	SNP	CASP2	NM_032982	human	genbank	57_37b	+1	reviewed	missense	c.514	p.V172F	0.962	NULL	HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD,superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS	-	
CCDC50	152137	genome.wustl.edu	37	3	191093245	191093245	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	191093245	191093245	A	T	SNP	CCDC50	NM_178335	human	genbank	57_37b	+1	reviewed	missense	c.843	p.Q281H	0.742	NULL	NULL	-	no_errors
CD38	952	genome.wustl.edu	37	4	15818139	15818139	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	15818139	15818139	T	C	SNP	CD38	NM_001775	human	genbank	57_37b	+1	validated	missense	c.239	p.V80A	0.000	superfamily_ADP ribosyl cyclase-like,HMMPfam_Rib_hydrolayse	superfamily_ADP ribosyl cyclase-like,HMMPfam_Rib_hydrolayse	-	no_errors
CHAD	1101	genome.wustl.edu	37	17	48545782	48545782	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48545782	48545782	G	A	SNP	CHAD	NM_001267	human	genbank	57_37b	-1	reviewed	silent	c.393	p.D131	1.000	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT	-	no_errors
CTNNB1	1499	genome.wustl.edu	37	3	41268806	41268806	+	Silent	SNP	T	T	A	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	41268806	41268806	T	A	SNP	CTNNB1	NM_001098209	human	genbank	57_37b	+1	reviewed	silent	c.1044	p.S348	0.987	superfamily_ARM repeat,HMMSmart_SM00185	superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm	-	no_errors
CTRB2	440387	genome.wustl.edu	37	16	75239875	75239875	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	75239875	75239875	G	T	SNP	CTRB2	NM_001025200	human	genbank	57_37b	-1	validated	missense	c.172	p.H58N	1.000	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
CYP2F1	1572	genome.wustl.edu	37	19	41627952	41627952	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41627952	41627952	G	T	SNP	CYP2F1	NM_000774	human	genbank	57_37b	+1	reviewed	missense	c.736	p.A246S	0.224	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
DALRD3	55152	genome.wustl.edu	37	3	49053757	49053757	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49053757	49053757	G	C	SNP	DALRD3	NM_001009996	human	genbank	57_37b	-1	validated	missense	c.1163	p.A388G	0.000	NULL	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_DALR_1	-	no_errors
ENSG00000245676	0	genome.wustl.edu	37	2	69692475	69692475	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	69692475	69692475	C	G	SNP	ENSG00000245676	ENST00000500264	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.018	-	-	-	no_errors
ENSG00000246242	0	genome.wustl.edu	37	1	28375047	28375047	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	28375047	28375047	T	C	SNP	ENSG00000246242	ENST00000500946	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
F2	2147	genome.wustl.edu	37	11	46744957	46744957	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	46744957	46744957	G	T	SNP	F2	NM_000506	human	genbank	57_37b	+1	reviewed	missense	c.448	p.A150S	0.171	HMMSmart_KR,HMMPfam_Kringle,superfamily_Kringle-like	HMMSmart_GLA,superfamily_VitK_dep_GLA,HMMPfam_Gla,PatternScan_GLA_1,HMMSmart_KR,HMMPfam_Kringle,superfamily_Kringle-like,PatternScan_KRINGLE_1,HMMPfam_Thrombin_light,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
FAT2	2196	genome.wustl.edu	37	5	150905430	150905430	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	150905430	150905430	C	A	SNP	FAT2	NM_001447	human	genbank	57_37b	-1	reviewed	missense	c.10405	p.G3469W	0.998	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
FAT2	2196	genome.wustl.edu	37	5	150924167	150924168	+	In_Frame_Ins	INS	-	-	TGGGCT	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	150924167	150924168	-	TGGGCT	INS	FAT2	NM_001447	human	genbank	57_37b	-1	reviewed	in_frame_ins	c.6521_6520	p.P2174in_frame_insQPT	0.105:0.112	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
FAT2	2196	genome.wustl.edu	37	5	150924172	150924172	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	150924172	150924172	C	T	SNP	FAT2	NM_001447	human	genbank	57_37b	-1	reviewed	silent	c.6516	p.Q2172	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,superfamily_EGF/Laminin	-	no_errors
FLJ39632	642477	genome.wustl.edu	37	14	19887528	19887528	+	RNA	SNP	T	C	C	rs2019544	byCluster;byHapMap	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	19887528	19887528	T	C	SNP	FLJ39632	XR_015133	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.106	-	-	-	
GHITM	27069	genome.wustl.edu	37	10	85901316	85901316	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	85901316	85901316	T	G	SNP	GHITM	NM_014394	human	genbank	57_37b	+1	validated	silent	c.60	p.A20	0.000	NULL	HMMPfam_UPF0005	-	no_errors
HMCN1	83872	genome.wustl.edu	37	1	185984569	185984569	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	185984569	185984569	G	C	SNP	HMCN1	NM_031935	human	genbank	57_37b	+1	reviewed	missense	c.4909	p.V1637L	1.000	NULL	superfamily_vWA-like,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,HMMPfam_I-set,HMMSmart_SM00406,PatternScan_CECROPIN,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMPfam_EGF_CA,PatternScan_EGF_2	-	no_errors
HTR3A	3359	genome.wustl.edu	37	11	113853915	113853919	+	Frame_Shift_Del	DEL	CCCCT	CCCCT	-	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	CCCCT	CCCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	113853915	113853919	CCCCT	-	DEL	HTR3A	NM_213621	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.448_452	p.P150fs	1.000:1.000:0.998:0.998:1.000	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	(deletion:cds_exon[113853842,113854011])	no_errors
IGSF1	3547	genome.wustl.edu	37	X	130409100	130409100	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	130409100	130409100	G	T	SNP	IGSF1	NM_001555	human	genbank	57_37b	-1	reviewed	nonsense	c.3345	p.Y1115*	0.997	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408	-	no_errors
KRTAP5-10	387273	genome.wustl.edu	37	11	71276905	71276905	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	71276905	71276905	A	C	SNP	KRTAP5-10	NM_001012710	human	genbank	57_37b	+1	validated	missense	c.272	p.K91T	0.636	NULL	PatternScan_MOLYBDOPTERIN_PROK_1,PatternScan_VWFC_1	-	no_errors
LMBR1L	55716	genome.wustl.edu	37	12	49499717	49499717	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49499717	49499717	T	C	SNP	LMBR1L	NM_018113	human	genbank	57_37b	-1	validated	missense	c.181	p.N61D	1.000	HMMPfam_LMBR1	HMMPfam_LMBR1	-	no_errors
LOC100132893	0	genome.wustl.edu	37	18	77516071	77516071	+	Missense_Mutation	SNP	C	A	A	rs57931637	byCluster;by1000genomes	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	77516071	77516071	C	A	SNP	LOC100132893	XM_001717932	human	genbank	57_37b	-1	model	missense	c.38	p.R13L	0.006	NULL	NULL	-	
LTF	4057	genome.wustl.edu	37	3	46501161	46501161	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	46501161	46501161	A	G	SNP	LTF	NM_002343	human	genbank	57_37b	-1	reviewed	silent	c.192	p.C64	0.531	superfamily_SSF53850,HMMPfam_Transferrin,HMMSmart_TR_FER	superfamily_SSF53850,HMMPfam_Transferrin,HMMSmart_TR_FER,PatternScan_TRANSFERRIN_1,PatternScan_TRANSFERRIN_2,PatternScan_TRANSFERRIN_3	-	no_errors
MBOAT1	154141	genome.wustl.edu	37	6	20144468	20144468	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	20144468	20144468	G	A	SNP	MBOAT1	NM_001080480	human	genbank	57_37b	-1	provisional	silent	c.402	p.L134	0.999	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors
NFYB	4801	genome.wustl.edu	37	12	104519903	104519903	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	104519903	104519903	G	A	SNP	NFYB	NM_006166	human	genbank	57_37b	-1	reviewed	nonsense	c.220	p.Q74*	1.000	superfamily_Histone-fold,HMMPfam_CBFD_NFYB_HMF	superfamily_Histone-fold,HMMPfam_CBFD_NFYB_HMF,PatternScan_NFYB_HAP3	-	no_errors
NLRP12	91662	genome.wustl.edu	37	19	54312951	54312951	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54312951	54312951	C	T	SNP	NLRP12	NM_144687	human	genbank	57_37b	-1	reviewed	silent	c.1962	p.L654	0.001	superfamily_RNI-like	HMMPfam_PAAD_DAPIN,superfamily_DEATH domain,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
OR2T3	343173	genome.wustl.edu	37	1	248636948	248636948	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248636948	248636948	G	A	SNP	OR2T3	NM_001005495	human	genbank	57_37b	+1	provisional	silent	c.297	p.P99	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PGK2	5232	genome.wustl.edu	37	6	49753845	49753845	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	49753845	49753845	G	T	SNP	PGK2	NM_138733	human	genbank	57_37b	-1	provisional	silent	c.1056	p.T352	0.998	HMMPfam_PGK,superfamily_PGK	HMMPfam_PGK,superfamily_PGK,PatternScan_PGLYCERATE_KINASE	-	no_errors
PINK1	65018	genome.wustl.edu	37	1	20977053	20977053	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	20977053	20977053	T	G	SNP	PINK1	NM_032409	human	genbank	57_37b	+1	reviewed	missense	c.1615	p.L539V	0.001	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
PIP4K2C	79837	genome.wustl.edu	37	12	57987825	57987825	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57987825	57987825	G	T	SNP	PIP4K2C	NM_024779	human	genbank	57_37b	+1	validated	missense	c.192	p.Q64H	1.000	superfamily_SSF56104	superfamily_SSF56104,HMMSmart_PIPKc,HMMPfam_PIP5K	-	no_errors
PKD1L1	168507	genome.wustl.edu	37	7	47921536	47921536	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	47921536	47921536	C	T	SNP	PKD1L1	NM_138295	human	genbank	57_37b	-1	reviewed	missense	c.3413	p.R1138Q	0.000	NULL	HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_PKD_channel	-	no_errors
PLEKHG5	57449	genome.wustl.edu	37	1	6530624	6530624	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	6530624	6530624	A	C	SNP	PLEKHG5	NM_198681	human	genbank	57_37b	-1	reviewed	missense	c.1853	p.V618G	1.000	superfamily_DH-domain	superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,HMMPfam_PH,superfamily_SSF50729,HMMSmart_PH	-	no_errors
POU2F2	5452	genome.wustl.edu	37	19	42596350	42596350	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42596350	42596350	C	T	SNP	POU2F2	NM_002698	human	genbank	57_37b	-1	validated	missense	c.1223	p.G408E	1.000	NULL	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
PTGER3	5733	genome.wustl.edu	37	1	71318542	71318542	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	71318542	71318542	C	G	SNP	PTGER3	NM_198716	human	genbank	57_37b	-1	reviewed	missense	c.1105	p.E369Q	0.987	NULL	superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
SCN2A	6326	genome.wustl.edu	37	2	166179821	166179822	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	166179821	166179822	CT	-	DEL	SCN2A	NM_001040142	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1827_1828	p.L611fs	1.000:1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_SM00015,HMMPfam_IQ	(deletion:cds_exon[166179666,166180010])	no_errors
SHROOM4	57477	genome.wustl.edu	37	X	50350476	50350476	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	50350476	50350476	G	C	SNP	SHROOM4	NM_020717	human	genbank	57_37b	-1	reviewed	missense	c.3666	p.H1222Q	0.000	HMMPfam_ASD2	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2	-	no_errors
SMC1B	27127	genome.wustl.edu	37	22	45804622	45804622	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	45804622	45804622	G	A	SNP	SMC1B	NM_148674	human	genbank	57_37b	-1	validated	silent	c.267	p.G89	0.803	superfamily_SSF52540,HMMPfam_SMC_N	superfamily_SSF52540,HMMPfam_SMC_N,superfamily_SMC_hinge,HMMPfam_SMC_hinge	-	no_errors
THEM5	284486	genome.wustl.edu	37	1	151823599	151823599	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151823599	151823599	A	G	SNP	THEM5	NM_182578	human	genbank	57_37b	-1	validated	missense	c.394	p.F132L	1.000	superfamily_SSF54637	superfamily_SSF54637,HMMPfam_4HBT	-	no_errors
TMEM91	641649	genome.wustl.edu	37	19	41889743	41889743	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41889743	41889743	C	T	SNP	TMEM91	NM_001098821	human	genbank	57_37b	+1	validated	silent	c.484	p.L162	1.000	NULL	HMMPfam_CD225	-	no_errors
TPCN2	219931	genome.wustl.edu	37	11	68825062	68825062	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	68825062	68825062	G	C	SNP	TPCN2	NM_139075	human	genbank	57_37b	+1	reviewed	missense	c.446	p.W149S	0.992	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_SSF81324,HMMPfam_Ion_trans	-	no_errors
UCK2	7371	genome.wustl.edu	37	1	165859581	165859581	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	165859581	165859581	G	A	SNP	UCK2	NM_012474	human	genbank	57_37b	+1	reviewed	silent	c.240	p.Q80	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_PRK	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_PRK	-	no_errors
USPL1	10208	genome.wustl.edu	37	13	31232168	31232168	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	31232168	31232168	A	G	SNP	USPL1	NM_005800	human	genbank	57_37b	+1	validated	missense	c.1954	p.I652V	0.000	NULL	NULL	-	no_errors
ZWILCH	55055	genome.wustl.edu	37	15	66829513	66829513	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	66829513	66829513	A	C	SNP	ZWILCH	NM_017975	human	genbank	57_37b	+1	validated	missense	c.1486	p.I496L	1.000	HMMPfam_DUF2352	HMMPfam_DUF2352	-	no_errors
