Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACLY	47	genome.wustl.edu	37	17	40065254	40065254	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40065254	40065254	T	A	SNP	ACLY	NM_001096	human	genbank	57_37b	-1	reviewed	missense	c.604	p.I202F	1.000	superfamily_SSF56059	superfamily_SSF56059,superfamily_CoA_ligase,PatternScan_SUCCINYL_COA_LIG_3,superfamily_NAD(P)-bd,HMMPfam_CoA_binding,superfamily_Citrate_synthase_core,HMMPfam_Ligase_CoA,PatternScan_SUCCINYL_COA_LIG_1,PatternScan_SUCCINYL_COA_LIG_2	-	no_errors
AK7	122481	genome.wustl.edu	37	14	96871122	96871122	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	96871122	96871122	G	A	SNP	AK7	NM_152327	human	genbank	57_37b	+1	validated	missense	c.323	p.R108H	0.007	superfamily_NAD(P)-binding Rossmann-fold domains	superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dpy-30	-	no_errors
ANXA13	312	genome.wustl.edu	37	8	124710745	124710745	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124710745	124710745	A	C	SNP	ANXA13	NM_001003954	human	genbank	57_37b	-1	reviewed	missense	c.364	p.L122V	0.101	superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335	superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335	-	no_errors
CBS	875	genome.wustl.edu	37	21	44483098	44483098	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	44483098	44483098	C	T	SNP	CBS	NM_000071	human	genbank	57_37b	-1	reviewed	missense	c.919	p.G307S	1.000	superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes,HMMPfam_PALP	superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes,HMMPfam_PALP,PatternScan_CYS_SYNTHASE,superfamily_CBS-domain,HMMPfam_CBS,HMMSmart_SM00116	-	no_errors
CCDC37	348807	genome.wustl.edu	37	3	126153123	126153123	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	126153123	126153123	C	T	SNP	CCDC37	NM_182628	human	genbank	57_37b	+1	validated	silent	c.1527	p.I509	0.076	NULL	NULL	-	no_errors
CDH6	1004	genome.wustl.edu	37	5	31294332	31294332	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	31294332	31294332	C	A	SNP	CDH6	NM_004932	human	genbank	57_37b	+1	reviewed	nonsense	c.492	p.Y164*	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
DAAM2	23500	genome.wustl.edu	37	6	39847226	39847226	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	39847226	39847226	G	A	SNP	DAAM2	NM_015345	human	genbank	57_37b	+1	validated	silent	c.1818	p.K606	1.000	superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2	HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2	-	no_errors
DCLK1	9201	genome.wustl.edu	37	13	36700097	36700097	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	36700097	36700097	G	A	SNP	DCLK1	NM_004734	human	genbank	57_37b	-1	validated	missense	c.178	p.R60C	1.000	superfamily_SSF89837,HMMSmart_DCX	superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
DLC1	10395	genome.wustl.edu	37	8	13357027	13357027	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	13357027	13357027	T	C	SNP	DLC1	NM_182643	human	genbank	57_37b	-1	reviewed	missense	c.554	p.D185G	0.042	NULL	HMMPfam_SAM_2,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234	-	no_errors
EMR1	2015	genome.wustl.edu	37	19	6919734	6919734	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6919734	6919734	C	T	SNP	EMR1	NM_001974	human	genbank	57_37b	+1	reviewed	silent	c.1596	p.I532	0.001	superfamily_Family A G protein-coupled receptor-like	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_Family A G protein-coupled receptor-like,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
ENSG00000206750	0	genome.wustl.edu	37	GL000205.1	81486	81486	+	RNA	SNP	A	A	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	GL000205.1	81486	81486	A	C	SNP	ENSG00000206750	ENST00000384023	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000245029	0	genome.wustl.edu	37	1	16889044	16889044	+	RNA	SNP	T	T	A	rs75564386	byCluster	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16889044	16889044	T	A	SNP	ENSG00000245029	ENST00000500210	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	
IDH3A	3419	genome.wustl.edu	37	15	78453949	78453949	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78453949	78453949	G	A	SNP	IDH3A	NM_005530	human	genbank	57_37b	+1	reviewed	missense	c.316	p.G106S	1.000	superfamily_Isocitrate/Isopropylmalate dehydrogenase-like,HMMPfam_Iso_dh	superfamily_Isocitrate/Isopropylmalate dehydrogenase-like,HMMPfam_Iso_dh,PatternScan_IDH_IMDH	-	no_errors
IGSF8	93185	genome.wustl.edu	37	1	160063723	160063723	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160063723	160063723	G	C	SNP	IGSF8	NM_052868	human	genbank	57_37b	-1	provisional	silent	c.681	p.A227	0.021	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	-	no_errors
ITPR3	3710	genome.wustl.edu	37	6	33653896	33653896	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33653896	33653896	G	A	SNP	ITPR3	NM_002224	human	genbank	57_37b	+1	validated	missense	c.5734	p.D1912N	1.000	HMMPfam_RIH_assoc	HMMPfam_Ins145_P3_rec,superfamily_MIR,HMMSmart_MIR,HMMPfam_MIR,superfamily_SSF100909,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors
KDM2A	22992	genome.wustl.edu	37	11	67020978	67020978	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67020978	67020978	G	A	SNP	KDM2A	NM_012308	human	genbank	57_37b	+1	reviewed	missense	c.2987	p.S996N	1.000	superfamily_RNI-like	superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-CXXC,PatternScan_2FE2S_FER_1,HMMSmart_SM00249,PatternScan_ZF_PHD_1,HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00367	-	no_errors
KIAA1199	57214	genome.wustl.edu	37	15	81221455	81221455	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	81221455	81221455	A	G	SNP	KIAA1199	NM_018689	human	genbank	57_37b	+1	validated	missense	c.2552	p.D851G	1.000	NULL	HMMPfam_G8	-	no_errors
LOC100288765	0	genome.wustl.edu	37	9	69845843	69845843	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	69845843	69845843	A	C	SNP	LOC100288765	XM_002342925	human	genbank	57_37b	+1	model	missense	c.172	p.N58H	0.143	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC100289496	0	genome.wustl.edu	37	16	73164976	73164976	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	73164976	73164976	G	T	SNP	LOC100289496	XM_002344114	human	genbank	57_37b	-1	model	missense	c.153	p.H51Q	0.000	NULL	NULL	-	no_errors
LOC400965	400965	genome.wustl.edu	37	2	87052964	87052964	+	RNA	SNP	T	C	C	rs111393066	byCluster;by1000genomes	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	87052964	87052964	T	C	SNP	LOC400965	XR_078256	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.000	-	-	-	
LRP1	4035	genome.wustl.edu	37	12	57602874	57602874	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57602874	57602874	G	A	SNP	LRP1	NM_002332	human	genbank	57_37b	+1	reviewed	missense	c.12154	p.V4052M	1.000	superfamily_YWTD domain,HMMPfam_Ldl_recept_b,HMMSmart_SM00135	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_1	-	no_errors
MAP1A	4130	genome.wustl.edu	37	15	43817021	43817021	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43817021	43817021	C	T	SNP	MAP1A	NM_002373	human	genbank	57_37b	+1	reviewed	missense	c.3350	p.A1117V	0.000	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
MIR1182	0	genome.wustl.edu	37	1	231155551	231155551	+	RNA	SNP	G	G	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	231155551	231155551	G	T	SNP	MIR1182	ENST00000501120	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.086	-	-	-	no_errors
MMP15	4324	genome.wustl.edu	37	16	58073925	58073925	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	58073925	58073925	A	T	SNP	MMP15	NM_002428	human	genbank	57_37b	+1	reviewed	missense	c.587	p.D196V	1.000	HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10	HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN	-	no_errors
MYO15A	51168	genome.wustl.edu	37	17	18022852	18022852	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18022852	18022852	C	T	SNP	MYO15A	NM_016239	human	genbank	57_37b	+1	reviewed	silent	c.738	p.Y246	0.983	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMSmart_SM00139,HMMPfam_MyTH4,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M	-	no_errors
MYO3A	53904	genome.wustl.edu	37	10	26463156	26463156	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	26463156	26463156	A	G	SNP	MYO3A	NM_017433	human	genbank	57_37b	+1	reviewed	silent	c.3963	p.E1321	0.003	superfamily_SSF52540	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ	-	no_errors
MYST4	23522	genome.wustl.edu	37	10	76788710	76788710	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	76788710	76788710	A	G	SNP	MYST4	NM_012330	human	genbank	57_37b	+1	validated	silent	c.4128	p.G1376	0.002	NULL	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_MOZ_SAS"	-	no_errors
OR2G3	81469	genome.wustl.edu	37	1	247769043	247769043	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247769043	247769043	T	G	SNP	OR2G3	NM_001001914	human	genbank	57_37b	+1	provisional	missense	c.156	p.D52E	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PAK3	5063	genome.wustl.edu	37	X	110366476	110366476	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	110366476	110366476	C	T	SNP	PAK3	NM_001128168	human	genbank	57_37b	+1	reviewed	missense	c.145	p.R49C	1.000	NULL	HMMPfam_PBD,HMMSmart_PBD,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
PANX1	24145	genome.wustl.edu	37	11	93913090	93913090	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	93913090	93913090	G	T	SNP	PANX1	NM_015368	human	genbank	57_37b	+1	reviewed	missense	c.868	p.V290L	0.001	NULL	NULL	-	no_errors
PCDHB4	56131	genome.wustl.edu	37	5	140503531	140503531	+	Missense_Mutation	SNP	C	C	T	rs17844417	byCluster	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140503531	140503531	C	T	SNP	PCDHB4	NM_018938	human	genbank	57_37b	+1	reviewed	missense	c.1951	p.R651C	0.488	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA	-	
PFKL	5211	genome.wustl.edu	37	21	45742920	45742920	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45742920	45742920	C	T	SNP	PFKL	NM_002626	human	genbank	57_37b	+1	reviewed	silent	c.1485	p.V495	0.985	superfamily_Phosphofructokinase,HMMPfam_PFK	HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE	-	no_errors
PITPNB	23760	genome.wustl.edu	37	22	28293118	28293118	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	28293118	28293118	C	T	SNP	PITPNB	NM_012399	human	genbank	57_37b	-1	reviewed	silent	c.297	p.T99	1.000	HMMPfam_IP_trans,superfamily_Bet v1-like	HMMPfam_IP_trans,superfamily_Bet v1-like	-	no_errors
PIWIL3	440822	genome.wustl.edu	37	22	25115535	25115535	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	25115535	25115535	C	T	SNP	PIWIL3	NM_001008496	human	genbank	57_37b	-1	validated	silent	c.2553	p.A851	0.991	superfamily_RNaseH_fold,HMMPfam_Piwi	superfamily_SSF101690,HMMPfam_PAZ,superfamily_RNaseH_fold,HMMPfam_Piwi	-	no_errors
PRAMEF11	440560	genome.wustl.edu	37	1	12887489	12887489	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	12887489	12887489	T	C	SNP	PRAMEF11	ENST00000331684	human	ensembl	57_37b	-1	known	missense	c.368	p.Y123C	0.000	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
RAB43	339122	genome.wustl.edu	37	3	128810076	128810076	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	128810076	128810076	T	C	SNP	RAB43	NM_198490	human	genbank	57_37b	-1	validated	missense	c.502	p.N168D	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors
RAP1GAP	5909	genome.wustl.edu	37	1	21924472	21924472	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	21924472	21924472	C	T	SNP	RAP1GAP	NM_001145658	human	genbank	57_37b	-1	validated	silent	c.2157	p.E719	0.995	NULL	HMMPfam_GoLoco,HMMSmart_SM00390,superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP	-	no_errors
RET	5979	genome.wustl.edu	37	10	43620335	43620335	+	Missense_Mutation	SNP	C	C	G	rs17158558	byCluster;byFrequency;by1000genomes	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	43620335	43620335	C	G	SNP	RET	NM_020975	human	genbank	57_37b	+1	reviewed	missense	c.2944	p.R982G	0.970	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	
REV3L	5980	genome.wustl.edu	37	6	111688818	111688818	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	111688818	111688818	C	A	SNP	REV3L	NM_002912	human	genbank	57_37b	-1	validated	missense	c.6173	p.C2058F	0.118	superfamily_Ribonuclease H-like	superfamily_Ribonuclease H-like,HMMSmart_SM00486,HMMPfam_DNA_pol_B_exo,superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_B,PatternScan_DNA_POLYMERASE_B	-	no_errors
RPS10P7	376693	genome.wustl.edu	37	1	201489565	201489565	+	RNA	SNP	C	T	T	rs4345829	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	201489565	201489565	C	T	SNP	RPS10P7	NR_026667	human	genbank	57_37b	+1	validated	rna	NULL	NULL	1.000	-	-	-	
SASH1	23328	genome.wustl.edu	37	6	148852768	148852768	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	148852768	148852768	G	A	SNP	SASH1	NM_015278	human	genbank	57_37b	+1	validated	missense	c.1535	p.R512H	1.000	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	-	no_errors
SLC16A11	162515	genome.wustl.edu	37	17	6946357	6946357	+	Missense_Mutation	SNP	C	C	A	rs75636181	byCluster;by1000genomes	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	6946357	6946357	C	A	SNP	SLC16A11	NM_153357	human	genbank	57_37b	-1	validated	missense	c.310	p.A104S	0.993	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	
SLC7A7	9056	genome.wustl.edu	37	14	23245482	23245482	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23245482	23245482	G	A	SNP	SLC7A7	NM_001126105	human	genbank	57_37b	-1	reviewed	silent	c.816	p.I272	1.000	HMMPfam_AA_permease	PatternScan_AMINO_ACID_PERMEASE_1,HMMPfam_AA_permease	-	no_errors
SMARCD3	6604	genome.wustl.edu	37	7	150937202	150937202	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150937202	150937202	C	T	SNP	SMARCD3	NM_001003801	human	genbank	57_37b	-1	reviewed	missense	c.1169	p.S390N	1.000	NULL	superfamily_SWIB/MDM2 domain,HMMPfam_SWIB,HMMSmart_SM00151	-	no_errors
SRGAP2P2	0	genome.wustl.edu	37	1	144014068	144014068	+	Missense_Mutation	SNP	T	C	C	rs1884146	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	144014068	144014068	T	C	SNP	SRGAP2P2	ENST00000360154	human	ensembl	57_37b	+1	known	missense	c.235	p.C79R	0.998	HMMPfam_FCH,HMMSmart_SM00055	HMMPfam_FCH,HMMSmart_SM00055	-	
TLE6	79816	genome.wustl.edu	37	19	2987728	2987728	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	2987728	2987728	G	T	SNP	TLE6	NM_001143986	human	genbank	57_37b	+1	validated	nonsense	c.565	p.E189*	0.234	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578534	7578534	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578534	7578534	C	G	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.396	p.K132N	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TRAPPC2	6399	genome.wustl.edu	37	X	13734634	13734634	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	13734634	13734634	A	G	SNP	TRAPPC2	NM_001128835	human	genbank	57_37b	-1	reviewed	missense	c.257	p.V86A	0.001	HMMPfam_Sedlin_N	superfamily_SNARE-like,HMMPfam_Sedlin_N	-	no_errors
TRPV2	51393	genome.wustl.edu	37	17	16330833	16330833	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	16330833	16330833	T	G	SNP	TRPV2	NM_016113	human	genbank	57_37b	+1	reviewed	missense	c.1322	p.L441R	0.990	NULL	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_Ion_trans	-	no_errors
TUBAL3	79861	genome.wustl.edu	37	10	5435789	5435789	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	5435789	5435789	C	T	SNP	TUBAL3	NM_024803	human	genbank	57_37b	-1	validated	silent	c.1032	p.S344	0.660	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
ZNF577	84765	genome.wustl.edu	37	19	52376691	52376691	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52376691	52376691	T	C	SNP	ZNF577	NM_032679	human	genbank	57_37b	-1	validated	silent	c.552	p.K184	0.519	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
