| GDAC_clinicalDataPicker1 stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/COAD/2169190/0.GDAC_clinicalDataMerger.Finished/COAD.clin.merged.txt |
| GDAC_clinicalDataPicker1 selectFile | file:/xchip/cga/reference/tcga/clinical/2012_11_14/stage3_params_clin_coad.tsv |
| GDAC_clinicalDataPicker1 nodeColumn | 1 |
| GDAC_clinicalDataPicker1 outPrefix | COAD |
| Execution Times: | |
| Submitted: | 23:29:53 21-12-12 |
| Completed: | |
| Elapsed: | 01 hrs 26 mins 41 secs |
step 1. GDAC_clinicalDataPicker [id: 276416] Picks out the clinical paramters of interest
urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:26
| stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/COAD/2169190/0.GDAC_clinicalDataMerger.Finished/COAD.clin.merged.txt |
| selectFile | file:/xchip/cga/reference/tcga/clinical/2012_11_14/stage3_params_clin_coad.tsv |
| nodeColumn | 1 |
| outPrefix | COAD |
| Output Files: | |
| COAD.clin.merged.picked.txt | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 23:30:01 21-12-12 |
| Completed: | 00:13:12 22-12-12 |
| Elapsed: | 00 hrs 43 mins 11 secs |
step 2. GDAC_clinicalDataPickerReport [id: 276417] Clinical data report
urn:lsid:broadinstitute.org:cancer.genome.analysis:00330:50
| picked | COAD.clin.merged.picked.txt |
| Execution Times: | |
| Submitted: | 23:30:01 21-12-12 |
| Completed: | 00:56:32 22-12-12 |
| Elapsed: | 01 hrs 26 mins 31 secs |