Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	i_ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	i_CCLE_SEQ_overlapping_mutations	i_CCLE_SEQ_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	i_tumor_f	i_init_t_lod	i_t_lod_fstar	t_alt_count	t_ref_count	i_judgement	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	i_t_ALT_F1R2	i_t_ALT_F2R1	i_t_REF_F1R2	i_t_REF_F2R1	i_t_Foxog	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	newbase	is_coding	is_flank	is_indel	is_ins	is_del	is_missense	is_nonsense	is_splice	is_silent	context_orig	context65	categ	categ_ignoring_null_categ	gene_idx	pat_idx
SYNE1	23345	broad.mit.edu	37	6	152665261	152665261	+	Missense_Mutation	SNP	C	A	A	rs4645434	byFrequency;by1000genomes	TCGA-06-0178-01	TCGA-06-0178-01									Unknown	Unspecified	Unspecified				Unspecified	g.chr6:152665261C>A	uc010kiw.2	-	74	12782	c.12180G>T	c.(12178-12180)GAG>GAT	p.E4060D	SYNE1_uc003qot.3_Missense_Mutation_p.E3989D|SYNE1_uc003qou.3_Missense_Mutation_p.E4060D|SYNE1_uc010kja.1_Missense_Mutation_p.E765D	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	4060	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding	p.E4060D(1)		central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GAGGACTTGGCTCTAAATCCG	0.453													HNSCC(10;0.0054)			0.508929	178.07123	178.07885	57	55	KEEP	---	---	---	---	31	30	34	24	0.491803278689	capture	Missense_Mutation	SNP	152665261	152665261	SYNE1	6	C	A	A	A	1	0	0	0	0	1	0	0	0	363	28	4	4	15333	38
SFT2D1	113402	broad.mit.edu	37	6	166739646	166739646	+	Missense_Mutation	SNP	T	C	C	rs11551053	byFrequency;by1000genomes	TCGA-06-0178-01	TCGA-06-0178-01									Unknown	Unspecified	Unspecified				Unspecified	g.chr6:166739646T>C	uc003qux.2	-	5	355	c.325A>G	c.(325-327)ATA>GTA	p.I109V		NM_145169	NP_660152	Q8WV19	SFT2A_HUMAN	SFT2 domain containing 1	109	Helical; Name=3; (Potential).				protein transport|vesicle-mediated transport	integral to membrane		p.I109V(1)		central_nervous_system(1)	1		Breast(66;0.000148)|Prostate(117;0.109)|Ovarian(120;0.199)		OV - Ovarian serous cystadenocarcinoma(33;2.63e-19)|BRCA - Breast invasive adenocarcinoma(81;4.92e-06)|GBM - Glioblastoma multiforme(31;4.58e-05)		AGGGTAAATATGAAACACAAC	0.413																0.412698	79.43785	79.857379	26	37	KEEP	---	---	---	---	14	15	21	17	-1	capture	Missense_Mutation	SNP	166739646	166739646	SFT2D1	6	T	C	C	C	1	0	0	0	0	1	0	0	0	663	51	3	3	14078	38
MYO1D	4642	broad.mit.edu	37	17	31203857	31203857	+	Frame_Shift_Del	DEL	C	-	-			TCGA-06-0178-01	TCGA-06-0178-01									Unknown	Unspecified	Unspecified				Unspecified	g.chr17:31203857delC	uc002hho.1	-	1	46	c.34delG	c.(34-36)GCAfs	p.A12fs	MYO1D_uc002hhp.1_Frame_Shift_Del_p.A12fs|MYO1D_uc010wcb.1_Frame_Shift_Del_p.A12fs	NM_015194	NP_056009	O94832	MYO1D_HUMAN	myosin ID	12	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3			BRCA - Breast invasive adenocarcinoma(9;0.0362)			ACGAAGTCTGCCTTGCCGAAT	0.726																0.33			2	4		---	---	---	---						capture_indel	Frame_Shift_Del	DEL	31203857	31203857	MYO1D	17	C	-	-	-	1	0	1	0	1	0	0	0	0	338	26	5	5	9981	38
