Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
LOC100132306	100132306	genome.wustl.edu	36	1	147914910	147914920	+	RNA	DEL	AGTTCTAAACA	AGTTCTAAACA	-			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	AGTTCTAAACA	AGTTCTAAACA			AGTTCTAAACA	AGTTCTAAACA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	147914910	147914920	AGTTCTAAACA	-	DEL	LOC100132306	XR_037921	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000	-	-	-	pseudogene
CDON	50937	genome.wustl.edu	36	11	125376911	125376911	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	125376911	125376911	C	T	SNP	CDON	NM_016952	human	genbank	54_36p	-1	validated	missense	c.2071	p.V691M	0.118	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
KIR3DX1	90011	genome.wustl.edu	36	19	59738875	59738875	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59738875	59738875	G	A	SNP	KIR3DX1	ENST00000221567	human	ensembl	54_36p	+1	known	missense	c.608	p.R203H	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig	-	no_errors
MIR142	406934	genome.wustl.edu	36	17	53763621	53763621	+	RNA	SNP	C	C	G			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	53763621	53763621	C	G	SNP	MIRN142	ENST00000384835	human	ensembl	54_36p	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
LOC729742	729742	genome.wustl.edu	36	2	122132742	122132742	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	122132742	122132742	A	T	SNP	LOC729742	XM_001723281	human	genbank	54_36p	-1	model	missense	c.812	p.I271K	1.000	NULL	HMMPfam_Ribosomal_L11_N,HMMPfam_Ribosomal_L11,PatternScan_RIBOSOMAL_L11	-	no_errors
LOC641808	641808	genome.wustl.edu	36	7	76586840	76586847	+	Frame_Shift_Del	DEL	ACTTCTAC	ACTTCTAC	-			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	ACTTCTAC	ACTTCTAC			ACTTCTAC	ACTTCTAC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	76586840	76586847	ACTTCTAC	-	DEL	LOC641808	XM_001717516	human	genbank	54_36p	-1	model	frame_shift_del	c.491_484	p.V162fs	0.773:0.752:0.731:0.757:0.746:0.789:0.955:0.970	NULL	NULL	-	pseudogene
CHD7	55636	genome.wustl.edu	36	8	61931592	61931594	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	GGA	GGA			GGA	GGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	61931592	61931594	GGA	-	DEL	CHD7	NM_017780	human	genbank	54_36p	+1	reviewed	in_frame_del	c.7199_7201	p.R2404in_frame_del	1.000:1.000:1.000	NULL	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	-	no_errors
LOC728115	728115	genome.wustl.edu	36	18	55835205	55835205	+	RNA	SNP	C	C	T			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	55835205	55835205	C	T	SNP	LOC728115	XR_038858	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.881	-	-	-	pseudogene
RELN	5649	genome.wustl.edu	36	7	102938684	102938684	+	Silent	SNP	A	A	G			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	102938684	102938684	A	G	SNP	RELN	NM_005045	human	genbank	54_36p	-1	reviewed	silent	c.8124	p.N2708	1.000	superfamily_Sialidase	HMMPfam_Reeler,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Sialidase	-	no_errors
RUNX1	861	genome.wustl.edu	36	21	35174809	35174810	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	35174809	35174810	-	G	INS	RUNX1	NM_001754	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.423_422	p.A142fs	0.921:1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
ENSG00000212884	0	genome.wustl.edu	36	NT_113930	117481	117481	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113930	117481	117481	G	A	SNP	ENSG00000212884	ENST00000391571	human	ensembl	54_36p	+1	known	missense	c.112	p.V38M	NULL	HMMPfam_2-Hacid_dh,superfamily_SSF52283	HMMPfam_2-Hacid_dh,superfamily_SSF52283	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179150442	179150442	+	Silent	SNP	G	G	A			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	179150442	179150442	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	silent	c.56809	p.L18937	0.869	HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Protein kinase-like (PK-like),superfamily_WD40 repeat-like,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	-	no_errors
DNAJB1	3337	genome.wustl.edu	36	19	14490074	14490074	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	14490074	14490074	G	A	SNP	DNAJB1	NM_006145	human	genbank	54_36p	-1	provisional	missense	c.88	p.R30C	1.000	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1,superfamily_HSP40/DnaJ peptide-binding domain,HMMPfam_DnaJ_C	-	no_errors
FPR1	2357	genome.wustl.edu	36	19	56941085	56941085	+	Silent	SNP	G	G	A			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	56941085	56941085	G	A	SNP	FPR1	NM_002029	human	genbank	54_36p	-1	validated	silent	c.975	p.T325	0.875	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ADCY3	109	genome.wustl.edu	36	2	24904318	24904318	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	24904318	24904318	G	A	SNP	ADCY3	NM_004036	human	genbank	54_36p	-1	reviewed	missense	c.2389	p.P797S	0.956	NULL	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
LOC100130622	100130622	genome.wustl.edu	36	9	136851790	136851790	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	136851790	136851790	C	T	SNP	LOC100130622	XM_001719605	human	genbank	54_36p	-1	model	nonsense	c.173	p.W58*	1.000	NULL	NULL	-	no_errors
KIF24	347240	genome.wustl.edu	36	9	34245837	34245837	+	Silent	SNP	G	G	A			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	34245837	34245837	G	A	SNP	KIF24	NM_194313	human	genbank	54_36p	-1	validated	silent	c.3768	p.P1256	0.043	NULL	HMMPfam_SAM_1,superfamily_SAM/Pointed domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
MTUS2	23281	genome.wustl.edu	36	13	28498513	28498513	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	28498513	28498513	G	A	SNP	KIAA0774	NM_001033602	human	genbank	54_36p	+1	validated	missense	c.1708	p.V570M	0.000	NULL	NULL	-	no_errors
ALMS1	7840	genome.wustl.edu	36	2	73600435	73600435	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	73600435	73600435	C	T	SNP	ALMS1	NM_015120	human	genbank	54_36p	+1	reviewed	missense	c.9562	p.L3188F	0.000	NULL	NULL	-	no_errors
SSPO	23145	genome.wustl.edu	36	7	149154128	149154128	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	149154128	149154128	C	G	SNP	SSPO	ENST00000378016	human	ensembl	54_36p	+1	known	missense	c.1277	p.T426R	0.004	NULL	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,superfamily_Cysrich_TIL,PatternScan_GLYCO_HORMONE_BETA_1	-	no_errors
BLZF1	8548	genome.wustl.edu	36	1	167612485	167612485	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	167612485	167612485	G	A	SNP	BLZF1	NM_003666	human	genbank	54_36p	+1	validated	missense	c.112	p.G38R	0.951	NULL	HMMPfam_DASH_Hsk3	-	no_errors
ENSG00000215198	0	genome.wustl.edu	36	9	35137999	35137999	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	35137999	35137999	A	G	SNP	ENSG00000215198	ENST00000358828	human	ensembl	54_36p	-1	known	missense	c.1109	p.F370S	0.703	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_stop_codon
NFX1	4799	genome.wustl.edu	36	9	33285194	33285194	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	33285194	33285194	C	T	SNP	NFX1	NM_002504	human	genbank	54_36p	+1	reviewed	nonsense	c.802	p.R268*	0.003	NULL	superfamily_RING/U-box,HMMSmart_SM00184,PatternScan_ZF_PHD_1,HMMPfam_zf-C3HC4,HMMPfam_zf-NF-X1,HMMSmart_SM00438,HMMSmart_SM00393,superfamily_R3H domain,HMMPfam_R3H	-	no_errors
BAI2	576	genome.wustl.edu	36	1	31969552	31969552	+	Silent	SNP	G	G	T			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	31969552	31969552	G	T	SNP	BAI2	NM_001703	human	genbank	54_36p	-1	reviewed	silent	c.3816	p.S1272	1.000	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
RUNX1	861	genome.wustl.edu	36	21	35153653	35153653	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	35153653	35153653	G	A	SNP	RUNX1	NM_001754	human	genbank	54_36p	-1	reviewed	nonsense	c.601	p.R201*	1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
FAM98C	147965	genome.wustl.edu	36	19	43591342	43591344	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	AAG	AAG			AAG	AAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	43591342	43591344	AAG	-	DEL	FAM98C	NM_174905	human	genbank	54_36p	+1	validated	in_frame_del	c.1030_1032	p.K347in_frame_del	0.972:0.981:0.998	NULL	HMMPfam_DUF2465	-	no_errors
DNAI1	27019	genome.wustl.edu	36	9	34496776	34496776	+	Silent	SNP	C	C	T			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	34496776	34496776	C	T	SNP	DNAI1	NM_012144	human	genbank	54_36p	+1	reviewed	silent	c.1215	p.D405	0.604	superfamily_WD40_like,HMMSmart_WD40	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors
TP73	7161	genome.wustl.edu	36	1	3637956	3637956	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	3637956	3637956	C	T	SNP	TP73	ENST00000378280	human	ensembl	54_36p	+1	known	missense	c.1258	p.P420S	1.000	NULL	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
IGHM	3507	genome.wustl.edu	36	14	105280433	105280433	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	105280433	105280433	C	G	SNP	IGHM	ENST00000390548	human	ensembl	54_36p	-1	known	missense	c.20	p.R7P	0.180	superfamily_Immunoglobulin	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZSWIM6	57688	genome.wustl.edu	36	5	60857872	60857872	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	60857872	60857872	C	T	SNP	ZSWIM6	ENST00000252744	human	ensembl	54_36p	+1	known	missense	c.313	p.R105C	1.000	NULL	NULL	-	no_start_codon
MYL9	10398	genome.wustl.edu	36	20	34606751	34606751	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	34606751	34606751	G	T	SNP	MYL9	NM_006097	human	genbank	54_36p	+1	reviewed	missense	c.50	p.R17L	1.000	NULL	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
NRBP2	340371	genome.wustl.edu	36	8	144991329	144991329	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	144991329	144991329	C	G	SNP	NRBP2	NM_178564	human	genbank	54_36p	-1	provisional	missense	c.404	p.G135A	1.000	NULL	NULL	-	no_errors
IDH2	3418	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	88432938	88432938	C	T	SNP	IDH2	NM_002168	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
TCEB3B	51224	genome.wustl.edu	36	18	42815075	42815075	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	42815075	42815075	C	T	SNP	TCEB3B	NM_016427	human	genbank	54_36p	-1	reviewed	missense	c.559	p.A187T	0.000	NULL	HMMSmart_TFS2N,HMMPfam_Elongin_A,HMMPfam_TFIIS	-	no_errors
GNB1	2782	genome.wustl.edu	36	1	1737088	1737088	+	Missense_Mutation	SNP	T	T	G	rs115521742	by1000genomes	TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	1737088	1737088	T	G	SNP	GNB1	NM_002074	human	genbank	54_36p	-1	reviewed	missense	c.170	p.K57T	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
EPPK1	83481	genome.wustl.edu	36	8	145012386	145012386	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	145012386	145012386	G	C	SNP	EPPK1	NM_031308	human	genbank	54_36p	-1	provisional	missense	c.6949	p.Q2317E	1.000	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	-	no_stop_codon:bad_bp_length_for_coding_region
CCDC18	343099	genome.wustl.edu	36	1	93464476	93464476	+	Splice_Site	SNP	A	A	T			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	93464476	93464476	A	T	SNP	CCDC18	NM_206886	human	genbank	54_36p	+1	validated	splice_site	c.2530-2	e17-2	0.995	-	-	-	no_errors
TNC	3371	genome.wustl.edu	36	9	116838243	116838243	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	116838243	116838243	T	C	SNP	TNC	NM_002160	human	genbank	54_36p	-1	validated	missense	c.5611	p.K1871E	0.977	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF,HMMPfam_EGF_2,HMMPfam_EGF,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMSmart_FBG,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen_a/b/g_C	-	no_errors
ENSG00000220948	0	genome.wustl.edu	36	11	48956096	48956096	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2805-03B-01W-0728-08	TCGA-AB-2805-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	48956096	48956096	T	A	SNP	ENSG00000220948	ENST00000402751	human	ensembl	54_36p	-1	known	missense	c.950	p.D317V	0.000	NULL	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_SPRY	-	no_stop_codon
