Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
LOC730167	730167	genome.wustl.edu	36	1	174852074	174852074	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	174852074	174852074	G	A	SNP	LOC730167	XM_001134386	human	genbank	54_36p	-1	model	missense	c.466	p.R156C	1.000	superfamily_(Phosphotyrosine protein) phosphatases II	superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
LOC100133049	100133049	genome.wustl.edu	36	1	222204551	222204551	+	RNA	SNP	T	T	C			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	222204551	222204551	T	C	SNP	LOC100133049	XR_038518	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
MGAT4B	11282	genome.wustl.edu	36	5	179160983	179160983	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	5	179160983	179160983	G	A	SNP	MGAT4B	NM_054013	human	genbank	54_36p	-1	reviewed	missense	c.560	p.P187L	0.752	HMMPfam_Glyco_transf_54	HMMPfam_Glyco_transf_54	-	no_errors
SKA3	221150	genome.wustl.edu	36	13	20644601	20644601	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	13	20644601	20644601	G	-	DEL	C13orf3	NM_145061	human	genbank	54_36p	-1	validated	frame_shift_del	c.208	p.Q70fs	0.958	NULL	NULL	-	no_errors
PMPCB	9512	genome.wustl.edu	36	7	102727130	102727130	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	7	102727130	102727130	G	T	SNP	PMPCB	NM_004279	human	genbank	54_36p	+1	reviewed	missense	c.245	p.G82V	1.000	superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16	superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16,PatternScan_INSULINASE,HMMPfam_Peptidase_M16_C	-	no_errors
ATP11B	23200	genome.wustl.edu	36	3	184065947	184065947	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	3	184065947	184065947	G	A	SNP	ATP11B	NM_014616	human	genbank	54_36p	+1	validated	missense	c.1210	p.V404M	1.000	superfamily_SSF56784,HMMPfam_Hydrolase	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660	-	no_errors
TMPRSS15	5651	genome.wustl.edu	36	21	18588511	18588511	+	Silent	SNP	G	G	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	21	18588511	18588511	G	A	SNP	PRSS7	NM_002772	human	genbank	54_36p	-1	reviewed	silent	c.2433	p.G811	0.930	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA,superfamily_LDL receptor-like module,HMMSmart_SM00192,HMMPfam_Ldl_recept_a,PatternScan_LDLRA_1,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27490640	27490640	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	13	27490640	27490640	A	C	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.2505	p.D835E	0.991	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
LOC100133718	100133718	genome.wustl.edu	36	4	17774	17774	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	4	17774	17774	G	A	SNP	LOC100133718	XM_001713866	human	genbank	54_36p	-1	model	missense	c.88	p.P30S	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
FAM65A	79567	genome.wustl.edu	36	16	66136380	66136380	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	16	66136380	66136380	C	T	SNP	FAM65A	NM_024519	human	genbank	54_36p	+1	validated	missense	c.2890	p.R964W	0.018	NULL	superfamily_ARM-type_fold	-	no_errors
MT-CO2	0	genome.wustl.edu	36	MT	7962	7962	+	Silent	SNP	T	T	C			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	MT	7962	7962	T	C	SNP	MT-CO2	ENST00000361739	human	ensembl	54_36p	+1	known	silent	c.376	p.L126	NULL	HMMPfam_COX2,superfamily_Cupredoxins	PatternScan_COX2,HMMPfam_COX2,superfamily_Cupredoxins,HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region	-	no_errors
ANO1	55107	genome.wustl.edu	36	11	69611539	69611539	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	11	69611539	69611539	G	A	SNP	ANO1	NM_018043	human	genbank	54_36p	+1	validated	missense	c.142	p.E48K	0.002	NULL	HMMPfam_DUF590	-	no_errors
ANKRD20A2	441430	genome.wustl.edu	36	9	42358596	42358596	+	Silent	SNP	C	C	T			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	9	42358596	42358596	C	T	SNP	ANKRD20A2	NM_001012421	human	genbank	54_36p	+1	validated	silent	c.186	p.A62	0.000	superfamily_ANK,HMMPfam_Ank	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	-	no_errors
HSD3B1	3283	genome.wustl.edu	36	1	119855801	119855801	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	119855801	119855801	G	A	SNP	HSD3B1	NM_000862	human	genbank	54_36p	+1	validated	missense	c.298	p.V100I	0.976	superfamily_NAD(P)-bd,HMMPfam_3Beta_HSD	superfamily_NAD(P)-bd,HMMPfam_3Beta_HSD	-	no_errors
ATP8B3	148229	genome.wustl.edu	36	19	1746952	1746952	+	Silent	SNP	G	G	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	1746952	1746952	G	A	SNP	ATP8B3	NM_138813	human	genbank	54_36p	-1	reviewed	silent	c.1977	p.T659	1.000	superfamily_SSF56784,superfamily_SSF81660	HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_EF_HAND_1,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660	-	no_errors
CACNA1B	774	genome.wustl.edu	36	9	140063588	140063588	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	9	140063588	140063588	C	T	SNP	CACNA1B	NM_000718	human	genbank	54_36p	+1	validated	missense	c.3710	p.S1237L	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
LOC728619	728619	genome.wustl.edu	36	15	91140283	91140283	+	Silent	SNP	C	C	G			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	91140283	91140283	C	G	SNP	LOC728619	XM_001127935	human	genbank	54_36p	+1	model	silent	c.324	p.P108	0.989	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	HMMSmart_SM00248,HMMPfam_Ank,superfamily_Ankyrin repeat	-	no_errors
LOC645181	645181	genome.wustl.edu	36	5	84881024	84881024	+	RNA	SNP	C	C	T			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	5	84881024	84881024	C	T	SNP	LOC645181	XR_017382	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.618	-	-	-	pseudogene
UPF1	5976	genome.wustl.edu	36	19	18824815	18824815	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	18824815	18824815	T	A	SNP	UPF1	NM_002911	human	genbank	54_36p	+1	reviewed	missense	c.992	p.V331D	1.000	NULL	HMMPfam_UPF1_Zn_bind,superfamily_SSF52540,HMMPfam_ResIII	-	no_errors
BCORL1	63035	genome.wustl.edu	36	X	128976217	128976218	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	X	128976217	128976218	-	A	INS	BCORL1	NM_021946	human	genbank	54_36p	+1	validated	frame_shift_ins	c.1788_1789	p.T596fs	0.002:0.198	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
LOC729495	729495	genome.wustl.edu	36	22	19352308	19352308	+	RNA	SNP	G	G	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	22	19352308	19352308	G	A	SNP	LOC729495	XR_015564	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
FAM22B	729262	genome.wustl.edu	36	10	81138496	81138496	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	10	81138496	81138496	C	T	SNP	FAM22B	XM_001133075	human	genbank	54_36p	+1	model	missense	c.1118	p.T373I	0.991	NULL	NULL	-	no_errors
GOLGA8IP	283796	genome.wustl.edu	36	15	20815585	20815585	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	20815585	20815585	A	G	SNP	GOLGA9P	ENST00000342314	human	ensembl	54_36p	+1	known	missense	c.1322	p.Q441R	0.002	NULL	NULL	-	no_errors
SHROOM2	357	genome.wustl.edu	36	X	9822449	9822449	+	Silent	SNP	C	C	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	X	9822449	9822449	C	A	SNP	SHROOM2	NM_001649	human	genbank	54_36p	+1	reviewed	silent	c.501	p.R167	0.890	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2	-	no_errors
