Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
IL4I1	259307	genome.wustl.edu	36	19	55090234	55090234	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2815-03B-01W-0728-08	TCGA-AB-2815-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	55090234	55090234	C	A	SNP	IL4I1	NM_172374	human	genbank	54_36p	-1	reviewed	missense	c.334	p.A112S	0.976	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
TGM7	116179	genome.wustl.edu	36	15	41366771	41366771	+	Silent	SNP	G	G	A			TCGA-AB-2815-03B-01W-0728-08	TCGA-AB-2815-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	41366771	41366771	G	A	SNP	TGM7	NM_052955	human	genbank	54_36p	-1	validated	silent	c.864	p.T288	0.871	HMMPfam_Transglut_core,HMMSmart_TGc,PatternScan_TRANSGLUTAMINASES,superfamily_SSF54001	HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_TGc,HMMPfam_Transglut_C,superfamily_Transglut_C,PatternScan_TRANSGLUTAMINASES,superfamily_Ig_E-set,superfamily_SSF54001	-	no_errors
MYO1F	4542	genome.wustl.edu	36	19	8521144	8521144	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2815-03B-01W-0728-08	TCGA-AB-2815-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	8521144	8521144	C	A	SNP	MYO1F	NM_012335	human	genbank	54_36p	-1	provisional	missense	c.1001	p.S334I	0.525	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMPfam_Myosin_TH1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
MUC17	140453	genome.wustl.edu	36	7	100471293	100471293	+	Silent	SNP	G	G	A			TCGA-AB-2815-03B-01W-0728-08	TCGA-AB-2815-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	100471293	100471293	G	A	SNP	MUC17	NM_001040105	human	genbank	54_36p	+1	provisional	silent	c.9876	p.T3292	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors
SOCS1	8651	genome.wustl.edu	36	16	11256495	11256495	+	Silent	SNP	G	G	A			TCGA-AB-2815-03B-01W-0728-08	TCGA-AB-2815-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	11256495	11256495	G	A	SNP	SOCS1	NM_003745	human	genbank	54_36p	-1	reviewed	silent	c.342	p.A114	0.928	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,HMMSmart_SM00253,HMMPfam_SOCS_box	-	no_errors
DNM3	26052	genome.wustl.edu	36	1	170304602	170304602	+	Silent	SNP	C	C	A			TCGA-AB-2815-03B-01W-0728-08	TCGA-AB-2815-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	170304602	170304602	C	A	SNP	DNM3	NM_015569	human	genbank	54_36p	+1	validated	silent	c.1356	p.L452	0.997	HMMPfam_Dynamin_M	HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_GED,HMMSmart_GED	-	no_errors
DPY19L2P1	554236	genome.wustl.edu	36	7	35097880	35097881	+	RNA	INS	-	-	TG			TCGA-AB-2815-03B-01W-0728-08	TCGA-AB-2815-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	35097880	35097881	-	TG	INS	DPY19L2P1	NR_002833	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.000:0.000	-	-	-	pseudogene
UHRF1	29128	genome.wustl.edu	36	19	4892576	4892576	+	Silent	SNP	G	G	T			TCGA-AB-2815-03B-01W-0728-08	TCGA-AB-2815-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	4892576	4892576	G	T	SNP	UHRF1	ENST00000398240	human	ensembl	54_36p	+1	known	silent	c.861	p.V287	1.000	NULL	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_ZF_PHD_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,HMMSmart_SM00184,HMMSmart_SM00466,HMMPfam_YDG_SRA,superfamily_RING/U-box,PatternScan_ZF_RING_1	-	no_errors
GATA6	2627	genome.wustl.edu	36	18	18005559	18005559	+	Silent	SNP	C	C	A			TCGA-AB-2815-03B-01W-0728-08	TCGA-AB-2815-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	18005559	18005559	C	A	SNP	GATA6	NM_005257	human	genbank	54_36p	+1	validated	silent	c.456	p.A152	1.000	HMMPfam_GATA-N	HMMPfam_GATA-N,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors
HSPD1	3329	genome.wustl.edu	36	2	198071779	198071779	+	Silent	SNP	C	C	T			TCGA-AB-2815-03B-01W-0728-08	TCGA-AB-2815-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	198071779	198071779	C	T	SNP	HSPD1	NM_002156	human	genbank	54_36p	-1	reviewed	silent	c.39	p.P13	0.935	NULL	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,PatternScan_CHAPERONINS_CPN60,superfamily_SSF52029,superfamily_SSF54849	-	no_errors
