Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ARID2	196528	genome.wustl.edu	36	12	44411273	44411273	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	44411273	44411273	G	T	SNP	ARID2	NM_152641	human	genbank	54_36p	+1	validated	nonsense	c.193	p.E65*	1.000	HMMPfam_ARID,superfamily_ARID-like,HMMSmart_SM00501	"HMMPfam_ARID,superfamily_ARID-like,HMMSmart_SM00501,superfamily_""Winged helix"" DNA-binding domain,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
VAV1	7409	genome.wustl.edu	36	19	6784228	6784228	+	Silent	SNP	C	C	T			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	6784228	6784228	C	T	SNP	VAV1	NM_005428	human	genbank	54_36p	+1	reviewed	silent	c.1542	p.N514	0.864	superfamily_SSF50729,superfamily_SSF57889	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_SH2,HMMSmart_SH2,PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_CH,HMMSmart_CH,HMMPfam_PH,HMMSmart_PH,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_Calponin-homology,superfamily_SSF50729,superfamily_SSF55550,superfamily_SSF57889	-	no_errors
ENSG00000215615	0	genome.wustl.edu	36	NT_113889	40774	40774	+	Silent	SNP	C	C	A			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113889	40774	40774	C	A	SNP	ENSG00000215615	ENST00000400681	human	ensembl	54_36p	-1	known	silent	c.156	p.V52	NULL	HMMPfam_Tektin	HMMPfam_Tektin	-	no_stop_codon
LOC646508	646508	genome.wustl.edu	36	19	58476711	58476711	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	58476711	58476711	C	T	SNP	LOC646508	XM_929435	human	genbank	54_36p	+1	model	missense	c.392	p.T131M	0.000	NULL	NULL	-	no_errors
SSX3	10214	genome.wustl.edu	36	X	48099011	48099011	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	48099011	48099011	C	T	SNP	SSX3	NM_021014	human	genbank	54_36p	-1	reviewed	missense	c.184	p.G62S	0.177	superfamily_Krueppel-associated_box,HMMSmart_KRAB,HMMPfam_KRAB	superfamily_Krueppel-associated_box,HMMSmart_KRAB,HMMPfam_KRAB,HMMPfam_SSXRD	-	no_errors
FAM127B	26071	genome.wustl.edu	36	X	134013593	134013593	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	134013593	134013593	C	T	SNP	FAM127B	NM_001078172	human	genbank	54_36p	-1	validated	missense	c.212	p.R71H	0.989	NULL	NULL	-	no_errors
C9orf171	389799	genome.wustl.edu	36	9	134437636	134437636	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	134437636	134437636	G	A	SNP	C9orf171	NM_207417	human	genbank	54_36p	+1	predicted	missense	c.881	p.R294H	0.996	NULL	NULL	-	no_errors
HMGXB4	10042	genome.wustl.edu	36	22	33991466	33991466	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	33991466	33991466	C	A	SNP	HMGXB4	NM_001003681	human	genbank	54_36p	+1	validated	missense	c.1085	p.P362H	0.981	NULL	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors
KIF1A	547	genome.wustl.edu	36	2	241345514	241345516	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	TCC	TCC			TCC	TCC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	241345514	241345516	TCC	-	DEL	KIF1A	ENST00000373308	human	ensembl	54_36p	-1	known	in_frame_del	c.2753_2751	p.E917in_frame_del	1.000:1.000:1.000	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA	-	no_stop_codon
TUBGCP5	114791	genome.wustl.edu	36	15	20405204	20405204	+	Silent	SNP	A	A	G			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	20405204	20405204	A	G	SNP	TUBGCP5	NM_001102610	human	genbank	54_36p	+1	validated	silent	c.1401	p.E467	0.992	HMMPfam_Spc97_Spc98	HMMPfam_Spc97_Spc98	-	no_errors
DERL3	91319	genome.wustl.edu	36	22	22509960	22509960	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	22509960	22509960	G	T	SNP	DERL3	NM_001002862	human	genbank	54_36p	-1	reviewed	missense	c.409	p.P137T	1.000	HMMPfam_DER1	HMMPfam_DER1	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27490642	27490642	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27490642	27490642	C	A	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.2503	p.D835Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
LOC390251	390251	genome.wustl.edu	36	11	113165837	113165837	+	RNA	SNP	T	T	G			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	113165837	113165837	T	G	SNP	LOC390251	XR_016610	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
FAIM2	23017	genome.wustl.edu	36	12	48569229	48569229	+	Silent	SNP	G	G	C			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	48569229	48569229	G	C	SNP	FAIM2	NM_012306	human	genbank	54_36p	-1	validated	silent	c.675	p.G225	0.973	HMMPfam_UPF0005	HMMPfam_UPF0005	-	no_errors
FLJ39632	642477	genome.wustl.edu	36	14	18961054	18961055	+	RNA	DEL	CT	CT	-			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	CT	CT			CT	CT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	18961054	18961055	CT	-	DEL	FLJ39632	XR_015133	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
AFTPH	54812	genome.wustl.edu	36	2	64661888	64661888	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	64661888	64661888	C	T	SNP	AFTPH	NM_203437	human	genbank	54_36p	+1	validated	missense	c.2516	p.S839F	1.000	NULL	PatternScan_EF_HAND_1	-	no_errors
LOC645954	645954	genome.wustl.edu	36	10	31033438	31033438	+	RNA	SNP	A	A	T			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	31033438	31033438	A	T	SNP	LOC645954	XR_017086	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310747	25310747	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25310747	25310747	G	A	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2644	p.R882C	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
IDH1	3417	genome.wustl.edu	36	2	208821357	208821357	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	208821357	208821357	C	T	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.395	p.R132H	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
OR8H2	390151	genome.wustl.edu	36	11	55629450	55629450	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	55629450	55629450	C	A	SNP	OR8H2	NM_001005200	human	genbank	54_36p	+1	provisional	missense	c.356	p.A119D	1.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
LOC100132499	100132499	genome.wustl.edu	36	7	102776448	102776448	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	102776448	102776448	G	T	SNP	LOC100132499	XM_001725693	human	genbank	54_36p	+1	model	missense	c.165	p.L55F	0.934	HMMPfam_Ribosomal_S14	HMMPfam_Ribosomal_S14	-	pseudogene
PSG8	440533	genome.wustl.edu	36	19	47951066	47951066	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	47951066	47951066	G	A	SNP	PSG8	NM_182707	human	genbank	54_36p	-1	validated	missense	c.902	p.T301M	0.568	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2	-	no_errors
LOC100132770	100132770	genome.wustl.edu	36	9	66983427	66983427	+	Silent	SNP	T	T	C			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	66983427	66983427	T	C	SNP	LOC100132770	XM_001720334	human	genbank	54_36p	+1	model	silent	c.168	p.D56	1.000	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CSPG4	1464	genome.wustl.edu	36	15	73769140	73769140	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	73769140	73769140	C	T	SNP	CSPG4	NM_001897	human	genbank	54_36p	-1	reviewed	missense	c.1321	p.E441K	1.000	NULL	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	no_errors
PRKAA1	5562	genome.wustl.edu	36	5	40803512	40803512	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	40803512	40803512	C	A	SNP	PRKAA1	NM_206907	human	genbank	54_36p	-1	reviewed	missense	c.679	p.G227W	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ENSG00000111788	0	genome.wustl.edu	36	12	9344969	9344969	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	9344969	9344969	C	T	SNP	ENSG00000111788	ENST00000341155	human	ensembl	54_36p	+1	known	missense	c.1108	p.P370S	1.000	superfamily_SSF52540,HMMSmart_DEXDc2,HMMPfam_DEAD_2	superfamily_SSF52540,HMMSmart_DEXDc2,HMMPfam_DEAD_2,HMMSmart_HELICc2	-	no_errors
NRAS	4893	genome.wustl.edu	36	1	115060267	115060267	+	Missense_Mutation	SNP	C	C	T	rs121434595		TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	C	C			C	C	Verified	Valid	Somatic		Capture				Illumina GAIIx	1	115060267	115060267	C	T	SNP	NRAS					-1	reviewed	missense	c.38	p.G13D	1	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	NA
CAMK1G	57172	genome.wustl.edu	36	1	207851977	207851977	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	207851977	207851977	G	A	SNP	CAMK1G	NM_020439	human	genbank	54_36p	+1	reviewed	missense	c.1133	p.G378D	0.001	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2816-03B-01W-0728-08	TCGA-AB-2816-11B-01W-0728-08					-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
