Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
TRPM8	79054	genome.wustl.edu	36	2	234510743	234510743	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	234510743	234510743	G	A	SNP	TRPM8	NM_024080	human	genbank	54_36p	+1	validated	missense	c.199	p.V67M	0.006	NULL	HMMPfam_Ion_trans	-	no_errors
RAD21	5885	genome.wustl.edu	36	8	117944678	117944679	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	117944678	117944679	-	C	INS	RAD21	NM_006265	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.146_145	p.V49fs	1.000:1.000	HMMPfam_Rad21_Rec8_N	HMMPfam_Rad21_Rec8,HMMPfam_Rad21_Rec8_N	-	no_errors
KLHL12	59349	genome.wustl.edu	36	1	201130363	201130363	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	201130363	201130363	T	G	SNP	KLHL12	NM_021633	human	genbank	54_36p	-1	provisional	missense	c.1273	p.S425R	1.000	superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	-	no_errors
LOC646346	646346	genome.wustl.edu	36	X	26615585	26615585	+	RNA	SNP	G	G	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	26615585	26615585	G	A	SNP	LOC646346	XR_017105	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08					-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
LOC727833	727833	genome.wustl.edu	36	16	10114342	10114342	+	RNA	SNP	C	C	T			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	10114342	10114342	C	T	SNP	LOC727833	XR_015181	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.007	-	-	-	pseudogene
UBE2D1	7321	genome.wustl.edu	36	10	59791109	59791109	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	59791109	59791109	G	T	SNP	UBE2D1	NM_003338	human	genbank	54_36p	+1	reviewed	missense	c.30	p.L10F	0.981	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con,PatternScan_UBIQUITIN_CONJUGAT_1	-	no_errors
MAPK9	5601	genome.wustl.edu	36	5	179608667	179608667	+	Silent	SNP	C	C	T			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	179608667	179608667	C	T	SNP	MAPK9	NM_002752	human	genbank	54_36p	-1	reviewed	silent	c.528	p.A176	0.606	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST	-	no_errors
HSD3B2	3284	genome.wustl.edu	36	1	119766661	119766661	+	Silent	SNP	G	G	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	119766661	119766661	G	A	SNP	HSD3B2	NM_000198	human	genbank	54_36p	+1	validated	silent	c.1014	p.A338	0.929	superfamily_NAD(P)-binding Rossmann-fold domains	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_3Beta_HSD	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27490642	27490642	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27490642	27490642	C	A	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.2503	p.D835Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
PIPSL	266971	genome.wustl.edu	36	10	95710248	95710248	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	95710248	95710248	C	G	SNP	PIPSL	ENST00000340582	human	ensembl	54_36p	-1	known	missense	c.896	p.R299T	0.156	HMMPfam_PIP5K,HMMSmart_PIPKc,superfamily_SSF56104	HMMSmart_VWA,HMMPfam_PIP5K,HMMPfam_UIM,HMMSmart_PIPKc,superfamily_SSF53300,superfamily_SSF56104	-	no_errors
ACTRT2	140625	genome.wustl.edu	36	1	2928268	2928270	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	AGA	AGA			AGA	AGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	2928268	2928270	AGA	-	DEL	ACTRT2	NM_080431	human	genbank	54_36p	+1	reviewed	in_frame_del	c.158_160	p.K55in_frame_del	0.991:1.000:1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,superfamily_Actin-like ATPase domain	-	no_errors
HPS5	11234	genome.wustl.edu	36	11	18271034	18271034	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	18271034	18271034	G	A	SNP	HPS5	NM_181507	human	genbank	54_36p	-1	reviewed	missense	c.1850	p.T617I	1.000	NULL	superfamily_WD40 repeat-like	-	no_errors
C5	727	genome.wustl.edu	36	9	122764816	122764816	+	Silent	SNP	C	C	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	122764816	122764816	C	A	SNP	C5	NM_001735	human	genbank	54_36p	-1	reviewed	silent	c.4458	p.G1486	0.995	superfamily_AM_receptor_bind,HMMPfam_A2M_recep	PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_N,HMMPfam_A2M_N_2,superfamily_Anaphylatoxin,HMMPfam_ANATO,HMMSmart_ANATO,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,superfamily_Terp_cyc_toroid,HMMPfam_A2M_comp,superfamily_AM_receptor_bind,HMMPfam_A2M_recep,HMMSmart_C345C,HMMPfam_NTR	-	no_errors
LOC147710	147710	genome.wustl.edu	36	19	49819010	49819010	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	49819010	49819010	A	G	SNP	LOC147710	XM_097278	human	genbank	54_36p	+1	model	missense	c.292	p.I98V	0.093	superfamily_Immunoglobulin	superfamily_Immunoglobulin	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25313378	25313378	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25313378	25313378	C	G	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2409	p.R803S	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
NT5C2	22978	genome.wustl.edu	36	10	104851021	104851021	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	104851021	104851021	C	A	SNP	NT5C2	NM_012229	human	genbank	54_36p	-1	validated	nonsense	c.442	p.E148*	0.996	HMMPfam_5_nucleotid	HMMPfam_5_nucleotid	-	no_errors
LOC646609	646609	genome.wustl.edu	36	9	22738240	22738240	+	RNA	SNP	G	G	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	22738240	22738240	G	A	SNP	LOC646609	XR_037907	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.042	-	-	-	pseudogene
ZBTB47	92999	genome.wustl.edu	36	3	42675154	42675154	+	Silent	SNP	C	C	T			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	42675154	42675154	C	T	SNP	ZBTB47	ENST00000232974	human	ensembl	54_36p	+1	known	silent	c.303	p.I101	0.920	HMMPfam_BTB,superfamily_POZ domain,HMMSmart_SM00225	HMMPfam_BTB,superfamily_POZ domain,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
MT-CO1	0	genome.wustl.edu	36	MT	7221	7221	+	Silent	SNP	T	T	C			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	7221	7221	T	C	SNP	MT-CO1	ENST00000361624	human	ensembl	54_36p	+1	known	silent	c.1317	p.R439	NULL	HMMPfam_COX1,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	no_stop_codon
FBXO30	84085	genome.wustl.edu	36	6	146167649	146167649	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	146167649	146167649	C	T	SNP	FBXO30	NM_032145	human	genbank	54_36p	-1	reviewed	missense	c.1586	p.R529K	1.000	NULL	superfamily_Traf_like,superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX	-	no_errors
LOC647211	647211	genome.wustl.edu	36	16	33332554	33332554	+	RNA	SNP	G	G	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	33332554	33332554	G	A	SNP	LOC647211	XR_017499	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.001	-	-	-	pseudogene
PSD3	23362	genome.wustl.edu	36	8	18769577	18769577	+	Silent	SNP	C	C	G			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	18769577	18769577	C	G	SNP	PSD3	NM_015310	human	genbank	54_36p	-1	validated	silent	c.1521	p.V507	0.111	NULL	HMMSmart_Sec7,HMMPfam_Sec7,superfamily_Sec7,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
MEA1	4201	genome.wustl.edu	36	6	43089041	43089041	+	Silent	SNP	G	G	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	43089041	43089041	G	A	SNP	MEA1	NM_014623	human	genbank	54_36p	-1	validated	silent	c.93	p.P31	0.997	HMMPfam_MEA1	HMMPfam_MEA1	-	no_errors
