Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
FAT2	2196	genome.wustl.edu	36	5	150909157	150909157	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	150909157	150909157	C	T	SNP	FAT2	NM_001447	human	genbank	54_36p	-1	reviewed	missense	c.4681	p.E1561K	1.000	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,superfamily_EGF/Laminin	-	no_errors
U2AF1	7307	genome.wustl.edu	36	21	43387846	43387846	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	43387846	43387846	T	G	SNP	U2AF1	NM_001025203	human	genbank	54_36p	-1	reviewed	missense	c.470	p.Q157P	1.000	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF54928	-	no_errors
NTRK3	4916	genome.wustl.edu	36	15	86273475	86273475	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	86273475	86273475	A	G	SNP	NTRK3	NM_001012338	human	genbank	54_36p	-1	reviewed	missense	c.2084	p.I695T	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors
E2F4	1874	genome.wustl.edu	36	16	65787295	65787297	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	CAG	CAG			CAG	CAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	65787295	65787297	CAG	-	DEL	E2F4	NM_001950	human	genbank	54_36p	+1	reviewed	in_frame_del	c.918_920	p.S310in_frame_del	0.998:0.999:1.000	NULL	superfamily_SSF46785,HMMPfam_E2F_TDP	-	no_errors
OR8H2	390151	genome.wustl.edu	36	11	55629610	55629610	+	Silent	SNP	C	C	T			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	55629610	55629610	C	T	SNP	OR8H2	NM_001005200	human	genbank	54_36p	+1	provisional	silent	c.516	p.N172	0.025	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
STK24	8428	genome.wustl.edu	36	13	97906761	97906761	+	Silent	SNP	C	C	T			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	97906761	97906761	C	T	SNP	STK24	ENST00000376533	human	ensembl	54_36p	-1	known	silent	c.1278	p.A426	0.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP	-	no_errors
GALNT2	2590	genome.wustl.edu	36	1	228481673	228481673	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	228481673	228481673	A	C	SNP	GALNT2	NM_004481	human	genbank	54_36p	+1	reviewed	missense	c.1562	p.K521T	1.000	superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin	-	no_errors
ENSG00000212884	0	genome.wustl.edu	36	NT_113930	117546	117546	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113930	117546	117546	G	-	DEL	ENSG00000212884	ENST00000391571	human	ensembl	54_36p	+1	known	frame_shift_del	c.177	p.C60fs	NULL	HMMPfam_2-Hacid_dh,superfamily_SSF52283	HMMPfam_2-Hacid_dh,superfamily_SSF52283	-	no_errors
LOC440311	440311	genome.wustl.edu	36	15	93199886	93199886	+	RNA	SNP	G	G	C			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	93199886	93199886	G	C	SNP	LOC440311	XR_016779	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.988	-	-	-	pseudogene
PRMT2	3275	genome.wustl.edu	36	21	46906196	46906196	+	Silent	SNP	C	C	T			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	46906196	46906196	C	T	SNP	PRMT2	NM_001535	human	genbank	54_36p	+1	validated	silent	c.1017	p.F339	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_MTS	-	no_errors
RDH8	50700	genome.wustl.edu	36	19	9992476	9992476	+	Silent	SNP	C	C	A			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	9992476	9992476	C	A	SNP	RDH8	NM_015725	human	genbank	54_36p	+1	validated	silent	c.534	p.I178	0.726	superfamily_NAD(P)-bd	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT	-	no_errors
ASXL1	171023	genome.wustl.edu	36	20	30486373	30486373	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	30486373	30486373	C	T	SNP	ASXL1	NM_015338	human	genbank	54_36p	+1	reviewed	nonsense	c.2197	p.Q733*	0.002	NULL	NULL	-	no_errors
FRRS1	391059	genome.wustl.edu	36	1	99967889	99967889	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	99967889	99967889	C	A	SNP	FRRS1	NM_001013660	human	genbank	54_36p	-1	validated	missense	c.763	p.D255Y	1.000	HMMPfam_DOMON,HMMSmart_DoH	HMMPfam_Reeler,HMMPfam_DOMON,HMMSmart_DoH,HMMSmart_B561	-	no_errors
RUNX1T1	862	genome.wustl.edu	36	8	93096001	93096001	+	Silent	SNP	G	G	A			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	93096001	93096001	G	A	SNP	RUNX1T1	NM_175634	human	genbank	54_36p	-1	reviewed	silent	c.450	p.T150	0.845	HMMPfam_TAFH,HMMSmart_SM00549	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,HMMPfam_TAFH,HMMSmart_SM00549,HMMPfam_NHR2	-	no_errors
C19orf34	255193	genome.wustl.edu	36	19	1905126	1905127	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	1905126	1905127	-	A	INS	C19orf34	ENST00000314315	human	ensembl	54_36p	-1	known	frame_shift_ins	c.10_9	p.A3fs	0.000:0.000	NULL	NULL	-	no_start_codon
ANXA6	309	genome.wustl.edu	36	5	150489282	150489282	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	150489282	150489282	C	A	SNP	ANXA6	NM_001155	human	genbank	54_36p	-1	reviewed	missense	c.797	p.G266V	1.000	superfamily_Annexin,HMMPfam_Annexin	superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_ANX	-	no_errors
IDH1	3417	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	208821358	208821358	G	A	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
IDH2	3418	genome.wustl.edu	36	15	88432842	88432842	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	88432842	88432842	C	T	SNP	IDH2	NM_002168	human	genbank	54_36p	-1	reviewed	missense	c.515	p.R172K	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
BOD1L	259282	genome.wustl.edu	36	4	13224941	13224941	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	13224941	13224941	T	C	SNP	BOD1L	NM_148894	human	genbank	54_36p	-1	validated	missense	c.1151	p.K384R	0.002	superfamily_SSF81995	HMMPfam_AT_hook,HMMSmart_AT_hook,superfamily_SSF81995	-	no_errors
SYNGAP1	8831	genome.wustl.edu	36	6	33517365	33517365	+	Silent	SNP	C	C	T			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	33517365	33517365	C	T	SNP	SYNGAP1	NM_006772	human	genbank	54_36p	+1	validated	silent	c.2100	p.P700	0.996	HMMSmart_SM00323,superfamily_GTPase activation domain GAP	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00233,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_PH domain-like	-	no_errors
C10orf28	27291	genome.wustl.edu	36	10	99958685	99958685	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	99958685	99958685	G	A	SNP	C10orf28	NM_014472	human	genbank	54_36p	+1	validated	missense	c.824	p.G275D	0.015	NULL	NULL	-	no_errors
SF3B4	10262	genome.wustl.edu	36	1	148164558	148164558	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	148164558	148164558	C	A	SNP	SF3B4	NM_005850	human	genbank	54_36p	-1	reviewed	missense	c.707	p.G236V	1.000	NULL	HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1	-	no_errors
MFSD6	54842	genome.wustl.edu	36	2	191009228	191009228	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	191009228	191009228	T	G	SNP	MFSD6	NM_017694	human	genbank	54_36p	+1	validated	missense	c.228	p.F76L	1.000	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors
LRP5L	91355	genome.wustl.edu	36	22	24086027	24086027	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	24086027	24086027	C	A	SNP	LRP5L	ENST00000215872	human	ensembl	54_36p	-1	known	missense	c.33	p.E11D	0.990	superfamily_YWTD domain,HMMPfam_Ldl_recept_b	superfamily_YWTD domain,HMMPfam_Ldl_recept_b,HMMSmart_SM00135	-	no_errors
ATG16L1	55054	genome.wustl.edu	36	2	233866685	233866685	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	233866685	233866685	T	A	SNP	ATG16L1	NM_030803	human	genbank	54_36p	+1	validated	missense	c.1673	p.L558Q	0.994	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_ATG16,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
CCDC74A	90557	genome.wustl.edu	36	2	132004807	132004807	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	132004807	132004807	C	T	SNP	CCDC74A	NM_138770	human	genbank	54_36p	+1	provisional	missense	c.481	p.R161C	0.001	NULL	NULL	-	no_errors
ENSG00000212884	0	genome.wustl.edu	36	NT_113930	117561	117561	+	Silent	SNP	C	C	T			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113930	117561	117561	C	T	SNP	ENSG00000212884	ENST00000391571	human	ensembl	54_36p	+1	known	silent	c.192	p.S64	NULL	HMMPfam_2-Hacid_dh,superfamily_SSF52283	HMMPfam_2-Hacid_dh,superfamily_SSF52283	-	no_errors
