Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
AP2A2	161	genome.wustl.edu	36	11	984098	984098	+	Silent	SNP	A	A	G			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	11	984098	984098	A	G	SNP	AP2A2	NM_012305	human	genbank	54_36p	+1	validated	silent	c.1809	p.P603	0.148	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,HMMPfam_Alpha_adaptin_C,superfamily_Subdomain of clathrin and coatomer appendage domain	-	no_errors
LOC400403	400403	genome.wustl.edu	36	15	75983712	75983712	+	RNA	SNP	G	G	A			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	75983712	75983712	G	A	SNP	LOC400403	XR_038194	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.009	-	-	-	pseudogene
CCT8L1	155100	genome.wustl.edu	36	7	151773706	151773706	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	7	151773706	151773706	G	A	SNP	CCT8L1	NM_001029866	human	genbank	54_36p	+1	inferred	missense	c.212	p.G71E	0.004	superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1	PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,superfamily_SSF54849,superfamily_SSF52029	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506217	27506218	+	In_Frame_Ins	INS	-	-	CCAAACTCTAAATTTTCTCTTGGAAACTCCCATTTGAGATCATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGTATTCGTG			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09					-	-	Verified	Valid	Somatic		Capture				Illumina HiSeq																ITD-check	NA	NA	NA	NA	NA
LOC653269	653269	genome.wustl.edu	36	2	130937084	130937084	+	Silent	SNP	G	G	A			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	130937084	130937084	G	A	SNP	LOC653269	XM_928585	human	genbank	54_36p	-1	model	silent	c.3003	p.G1001	0.997	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
FCGBP	8857	genome.wustl.edu	36	19	45060459	45060459	+	Silent	SNP	G	G	A			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	45060459	45060459	G	A	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	silent	c.12729	p.G4243	0.827	NULL	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors
NBPF1	55672	genome.wustl.edu	36	1	16775471	16775471	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	16775471	16775471	T	C	SNP	NBPF1	ENST00000287968	human	ensembl	54_36p	-1	known	missense	c.164	p.N55S	0.005	NULL	HMMPfam_DUF1220	-	no_errors
MUC1	4582	genome.wustl.edu	36	1	153428505	153428505	+	Silent	SNP	C	C	T			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	153428505	153428505	C	T	SNP	MUC1	ENST00000328530	human	ensembl	54_36p	-1	known	silent	c.252	p.T84	0.001	NULL	superfamily_SSF82671,HMMSmart_SEA,HMMPfam_SEA	-	no_errors
LOC728770	728770	genome.wustl.edu	36	15	32602482	32602482	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	32602482	32602482	G	C	SNP	LOC728770	XM_001718857	human	genbank	54_36p	+1	model	missense	c.669	p.Q223H	0.016	NULL	HMMPfam_GED,HMMSmart_SM00302	-	pseudogene
HSD17B7P2	158160	genome.wustl.edu	36	10	38685349	38685349	+	RNA	SNP	C	C	T			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	10	38685349	38685349	C	T	SNP	HSD17B7P2	NR_003086	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.000	-	-	-	pseudogene
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09	C	C			C	C	Verified	Valid	Somatic		Capture				Illumina HiSeq	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1	NULL	HMMPfam_PWWP;HMMPfam_DNA_methylase;superfamily_FYVE/PHD zinc finger;superfamily_S-adenosyl-L-methionine-dependent methyltransferases;superfamily_Tudor/PWWP/MBT	-	NA
CSPG4	1464	genome.wustl.edu	36	15	73769127	73769127	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	73769127	73769127	G	A	SNP	CSPG4	NM_001897	human	genbank	54_36p	-1	reviewed	missense	c.1334	p.A445V	1.000	NULL	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	no_errors
DRD5P2	1818	genome.wustl.edu	36	1	147169721	147169721	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	147169721	147169721	C	A	SNP	DRD5P2	ENST00000331689	human	ensembl	54_36p	+1	known	missense	c.136	p.R46S	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_start_codon:no_stop_codon
LOC653657	653657	genome.wustl.edu	36	19	7007571	7007571	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	7007571	7007571	G	T	SNP	LOC653657	XM_928697	human	genbank	54_36p	-1	model	missense	c.389	p.A130D	0.000	NULL	NULL	-	no_errors
FCGBP	8857	genome.wustl.edu	36	19	45060231	45060231	+	Silent	SNP	G	G	A			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	45060231	45060231	G	A	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	silent	c.12957	p.D4319	0.152	HMMPfam_C8	HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2825-03D-01W-0755-09	TCGA-AB-2825-11D-01W-0755-09					-	-	Verified	Valid	Somatic		Capture				Illumina HiSeq	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
