Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
PKD1L2	114780	genome.wustl.edu	36	16	79719117	79719117	+	Silent	SNP	C	C	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	79719117	79719117	C	A	SNP	PKD1L2	ENST00000299598	human	ensembl	54_36p	-1	known	silent	c.6108	p.V2036	1.000	HMMPfam_PKD_channel	HMMPfam_GPS,HMMSmart_SM00303,PatternScan_CHANNEL_COLICIN,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel,superfamily_C-type lectin-like	-	no_errors
ROBO3	64221	genome.wustl.edu	36	11	124249215	124249215	+	Silent	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	124249215	124249215	C	T	SNP	ROBO3	NM_022370	human	genbank	54_36p	+1	validated	silent	c.1824	p.G608	0.004	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
TLE1	7088	genome.wustl.edu	36	9	83492131	83492131	+	Silent	SNP	A	A	G			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	83492131	83492131	A	G	SNP	TLE1	NM_005077	human	genbank	54_36p	-1	provisional	silent	c.63	p.T21	0.998	HMMPfam_TLE_N	HMMPfam_TLE_N,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
PRDM9	56979	genome.wustl.edu	36	5	23563187	23563187	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	23563187	23563187	G	A	SNP	PRDM9	NM_020227	human	genbank	54_36p	+1	provisional	missense	c.2233	p.E745K	1.000	superfamily_SSF57667	HMMSmart_SET,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,HMMPfam_SSXRD,superfamily_SSF57667,superfamily_SSF82199	-	no_errors
LOC728098	728098	genome.wustl.edu	36	6	101444154	101444154	+	RNA	SNP	A	A	C			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	101444154	101444154	A	C	SNP	LOC728098	XR_015201	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.025	-	-	-	pseudogene
MIR520G	574484	genome.wustl.edu	36	19	58917313	58917313	+	RNA	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	58917313	58917313	C	T	SNP	MIRN520G	ENST00000385064	human	ensembl	54_36p	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
LOC389827	389827	genome.wustl.edu	36	9	135375148	135375148	+	Silent	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	135375148	135375148	C	T	SNP	LOC389827	NM_001080483	human	genbank	54_36p	-1	inferred	silent	c.219	p.G73	0.994	NULL	NULL	-	no_errors
PLEKHH1	57475	genome.wustl.edu	36	14	67110289	67110289	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	67110289	67110289	C	T	SNP	PLEKHH1	NM_020715	human	genbank	54_36p	+1	validated	missense	c.1858	p.P620S	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMPfam_MyTH4,HMMSmart_SM00139,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like	-	no_errors
RIMBP3B	440804	genome.wustl.edu	36	22	20070907	20070907	+	Silent	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	20070907	20070907	G	A	SNP	RIMBP3B	ENST00000357029	human	ensembl	54_36p	+1	known	silent	c.2478	p.A826	0.001	NULL	superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2,superfamily_FN_III-like,HMMSmart_FN3	-	no_errors
PTAR1	375743	genome.wustl.edu	36	9	71537035	71537035	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	71537035	71537035	G	A	SNP	PTAR1	NM_001099666	human	genbank	54_36p	-1	validated	missense	c.482	p.T161I	0.715	superfamily_Prenyl_trans	superfamily_Prenyl_trans,HMMPfam_PPTA	-	no_errors
BNC1	646	genome.wustl.edu	36	15	81722891	81722891	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	81722891	81722891	C	T	SNP	BNC1	NM_001717	human	genbank	54_36p	-1	reviewed	missense	c.2116	p.V706M	0.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
LOC729978	729978	genome.wustl.edu	36	16	11929022	11929022	+	Silent	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	11929022	11929022	G	A	SNP	LOC729978	XM_001723016	human	genbank	54_36p	-1	model	silent	c.858	p.P286	0.000	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
LOC646700	646700	genome.wustl.edu	36	9	28138527	28138527	+	RNA	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	28138527	28138527	G	A	SNP	LOC646700	XR_037933	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
ZNF749	388567	genome.wustl.edu	36	19	62648198	62648198	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	62648198	62648198	C	T	SNP	ZNF749	NM_001023561	human	genbank	54_36p	+1	provisional	missense	c.1870	p.R624C	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2	-	no_errors
LOC392197	392197	genome.wustl.edu	36	8	12028858	12028858	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	12028858	12028858	G	A	SNP	LOC392197	XM_373243	human	genbank	54_36p	-1	model	missense	c.70	p.R24W	0.000	NULL	PatternScan_UCH_2_1,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_2	-	no_errors
LAMA5	3911	genome.wustl.edu	36	20	60322780	60322780	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	60322780	60322780	G	T	SNP	LAMA5	NM_005560	human	genbank	54_36p	-1	reviewed	missense	c.8479	p.Q2827K	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
HEXIM1	10614	genome.wustl.edu	36	17	40582829	40582829	+	Silent	SNP	T	T	C			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	40582829	40582829	T	C	SNP	HEXIM1	NM_006460	human	genbank	54_36p	+1	reviewed	silent	c.489	p.H163	0.998	NULL	NULL	-	no_errors
ZC3H8	84524	genome.wustl.edu	36	2	112728983	112728983	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	112728983	112728983	C	T	SNP	ZC3H8	NM_032494	human	genbank	54_36p	-1	validated	missense	c.47	p.G16D	0.787	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	-	no_errors
DRGX	644168	genome.wustl.edu	36	10	50264634	50264634	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	50264634	50264634	C	T	SNP	DRGX	NM_001080520	human	genbank	54_36p	-1	provisional	missense	c.437	p.R146Q	0.997	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR	-	no_errors
RAB11FIP5	26056	genome.wustl.edu	36	2	73161027	73161027	+	Silent	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	73161027	73161027	C	T	SNP	RAB11FIP5	ENST00000389508	human	ensembl	54_36p	-1	known	silent	c.2847	p.P949	0.021	NULL	PatternScan_ENOYL_COA_HYDRATASE,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_RBD-FIP	-	no_start_codon
LOC401010	401010	genome.wustl.edu	36	2	131918248	131918248	+	RNA	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	131918248	131918248	G	A	SNP	LOC401010	NR_002826	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0.600	-	-	-	pseudogene
ENSG00000215615	0	genome.wustl.edu	36	NT_113889	39014	39014	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113889	39014	39014	A	G	SNP	ENSG00000215615	ENST00000400681	human	ensembl	54_36p	-1	known	missense	c.449	p.V150A	NULL	NULL	HMMPfam_Tektin	-	no_stop_codon
SNORA71C	677839	genome.wustl.edu	36	20	36491857	36491857	+	RNA	SNP	A	A	G			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	36491857	36491857	A	G	SNP	SNORA71C	NR_003017	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.996	-	-	-	no_errors
FAM22A	728118	genome.wustl.edu	36	10	88978095	88978095	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	88978095	88978095	G	A	SNP	FAM22A	NM_001099338	human	genbank	54_36p	+1	validated	missense	c.478	p.A160T	0.001	NULL	NULL	-	no_errors
LOC653657	653657	genome.wustl.edu	36	19	7007590	7007590	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	7007590	7007590	C	T	SNP	LOC653657	XM_928697	human	genbank	54_36p	-1	model	missense	c.370	p.G124S	0.001	NULL	NULL	-	no_errors
LILRA6	79168	genome.wustl.edu	36	19	59438403	59438403	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59438403	59438403	C	T	SNP	LILRA6	NM_024318	human	genbank	54_36p	-1	validated	missense	c.10	p.A4T	0.000	NULL	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
C17orf102	400591	genome.wustl.edu	36	17	29930151	29930151	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	29930151	29930151	G	C	SNP	C17orf102	NM_207454	human	genbank	54_36p	-1	validated	missense	c.262	p.R88G	0.001	NULL	NULL	-	no_errors
ZNF486	90649	genome.wustl.edu	36	19	20169074	20169074	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	20169074	20169074	A	G	SNP	ZNF486	NM_052852	human	genbank	54_36p	+1	provisional	missense	c.555	p.I185M	0.281	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
CYP20A1	57404	genome.wustl.edu	36	2	203869755	203869755	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	203869755	203869755	T	A	SNP	CYP20A1	NM_177538	human	genbank	54_36p	+1	reviewed	missense	c.1268	p.L423H	0.867	superfamily_Cytochrome_P450	superfamily_Cytochrome_P450,HMMPfam_p450	-	no_errors
LOC613037	613037	genome.wustl.edu	36	16	30144239	30144239	+	RNA	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	30144239	30144239	G	A	SNP	LOC613037	NR_002555	human	genbank	54_36p	-1	predicted	rna	NULL	NULL	0.000	-	-	-	pseudogene
MSLNL	401827	genome.wustl.edu	36	16	763281	763281	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	763281	763281	G	A	SNP	MSLNL	NM_001025190	human	genbank	54_36p	-1	provisional	missense	c.1988	p.T663M	0.219	HMMPfam_Mesothelin	HMMPfam_Mesothelin	-	no_errors
PTPRN2	5799	genome.wustl.edu	36	7	157384132	157384132	+	Silent	SNP	G	G	C			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	157384132	157384132	G	C	SNP	PTPRN2	NM_002847	human	genbank	54_36p	-1	reviewed	silent	c.1782	p.V594	0.279	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
ENSG00000215604	0	genome.wustl.edu	36	13	17940705	17940705	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	17940705	17940705	A	G	SNP	ENSG00000215604	ENST00000342944	human	ensembl	54_36p	-1	known	missense	c.1219	p.F407L	0.618	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_KRAB,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_stop_codon
DTX2	113878	genome.wustl.edu	36	7	75964673	75964673	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	75964673	75964673	C	T	SNP	DTX2	NM_001102594	human	genbank	54_36p	+1	validated	missense	c.1093	p.R365C	0.935	NULL	HMMPfam_WWE,HMMSmart_SM00678,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
ADAT3	113179	genome.wustl.edu	36	19	1863986	1863986	+	Silent	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	1863986	1863986	C	T	SNP	ADAT3	NM_138422	human	genbank	54_36p	+1	validated	silent	c.892	p.L298	0.987	superfamily_Cytidine_deaminase-like,HMMPfam_dCMP_cyt_deam_1	PatternScan_CYT_DCMP_DEAMINASES,superfamily_Cytidine_deaminase-like,HMMPfam_dCMP_cyt_deam_1	-	no_errors
C9orf174	100499483	genome.wustl.edu	36	9	99167824	99167824	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	99167824	99167824	C	G	SNP	KIAA1529	NM_020893	human	genbank	54_36p	+1	predicted	missense	c.3996	p.N1332K	0.328	NULL	NULL	-	no_errors
OR10G4	390264	genome.wustl.edu	36	11	123391563	123391563	+	Silent	SNP	C	C	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	123391563	123391563	C	A	SNP	OR10G4	NM_001004462	human	genbank	54_36p	+1	provisional	silent	c.72	p.L24	0.000	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PIAS2	9063	genome.wustl.edu	36	18	42655023	42655023	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	42655023	42655023	A	C	SNP	PIAS2	NM_004671	human	genbank	54_36p	-1	validated	missense	c.1519	p.Y507D	1.000	NULL	HMMPfam_SAP,HMMSmart_SM00513,superfamily_RING/U-box,HMMPfam_zf-MIZ	-	no_errors
ENSG00000200235	0	genome.wustl.edu	36	5	139939543	139939543	+	RNA	SNP	C	C	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	139939543	139939543	C	A	SNP	ENSG00000200235	ENST00000363365	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.998	-	-	-	no_errors
ZNF394	84124	genome.wustl.edu	36	7	98929185	98929185	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	98929185	98929185	C	T	SNP	ZNF394	NM_032164	human	genbank	54_36p	-1	provisional	missense	c.1589	p.C530Y	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
UPF1	5976	genome.wustl.edu	36	19	18827824	18827824	+	Silent	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	18827824	18827824	C	T	SNP	UPF1	NM_002911	human	genbank	54_36p	+1	reviewed	silent	c.1635	p.C545	0.994	superfamily_SSF52540	HMMPfam_ResIII,HMMPfam_UPF1_Zn_bind,superfamily_SSF52540	-	no_errors
PLXDC1	57125	genome.wustl.edu	36	17	34549551	34549551	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	34549551	34549551	C	T	SNP	PLXDC1	NM_020405	human	genbank	54_36p	-1	validated	missense	c.137	p.R46Q	0.965	NULL	HMMPfam_PSI	-	no_errors
ZC3HC1	51530	genome.wustl.edu	36	7	129453268	129453268	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	129453268	129453268	C	T	SNP	ZC3HC1	NM_016478	human	genbank	54_36p	-1	validated	missense	c.742	p.A248T	1.000	NULL	HMMPfam_zf-C3HC	-	no_errors
AGRN	375790	genome.wustl.edu	36	1	968837	968837	+	Missense_Mutation	SNP	G	G	A	rs75475567		TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	968837	968837	G	A	SNP	AGRN	NM_198576	human	genbank	54_36p	+1	validated	missense	c.1660	p.V554M	1.000	superfamily_SSF100895,HMMSmart_KAZAL	HMMPfam_NtA,superfamily_TIMP_like,HMMSmart_FOLN,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_1,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_SSF82671,HMMPfam_SEA,HMMSmart_SEA,HMMSmart_EGF,HMMPfam_EGF,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_1,PatternScan_EGF_2	-	no_errors
TGM6	343641	genome.wustl.edu	36	20	2332304	2332304	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	2332304	2332304	G	A	SNP	TGM6	NM_198994	human	genbank	54_36p	+1	validated	missense	c.1171	p.V391M	1.000	superfamily_Cysteine proteinases	HMMPfam_Transglut_N,superfamily_E set domains,superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglutaminase two C-terminal domains,HMMPfam_Transglut_C	-	no_errors
LOC100134081	100134081	genome.wustl.edu	36	16	7832	7832	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	7832	7832	A	G	SNP	LOC100134081	XM_001715304	human	genbank	54_36p	+1	model	missense	c.46	p.K16E	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
AKAP17A	8227	genome.wustl.edu	36	X	1672364	1672364	+	Silent	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	1672364	1672364	G	A	SNP	SFRS17A	NM_005088	human	genbank	54_36p	+1	validated	silent	c.9	p.A3	0.998	NULL	NULL	-	no_errors
GJB4	127534	genome.wustl.edu	36	1	34999735	34999735	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	34999735	34999735	G	A	SNP	GJB4	NM_153212	human	genbank	54_36p	+1	validated	missense	c.293	p.R98H	0.975	HMMPfam_Connexin	HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2	-	no_errors
VASH1	22846	genome.wustl.edu	36	14	76314113	76314113	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	76314113	76314113	C	T	SNP	VASH1	NM_014909	human	genbank	54_36p	+1	validated	missense	c.971	p.S324F	1.000	NULL	NULL	-	no_errors
NRXN2	9379	genome.wustl.edu	36	11	64191642	64191642	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	64191642	64191642	C	G	SNP	NRXN2	NM_015080	human	genbank	54_36p	-1	reviewed	missense	c.1454	p.R485P	1.000	superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
AHNAK2	113146	genome.wustl.edu	36	14	104483111	104483111	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	104483111	104483111	C	T	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	missense	c.9722	p.R3241H	0.004	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_Involucrin	-	no_errors
SEC16A	9919	genome.wustl.edu	36	9	138489654	138489654	+	Silent	SNP	C	C	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	138489654	138489654	C	T	SNP	SEC16A	NM_014866	human	genbank	54_36p	-1	validated	silent	c.2235	p.P745	0.058	NULL	NULL	-	no_errors
LOC100130600	100130600	genome.wustl.edu	36	7	128085152	128085152	+	Silent	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	128085152	128085152	G	A	SNP	LOC100130600	XM_001726460	human	genbank	54_36p	-1	model	silent	c.597	p.L199	0.042	NULL	NULL	-	no_errors
SREBF2	6721	genome.wustl.edu	36	22	40603972	40603972	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	40603972	40603972	G	A	SNP	SREBF2	NM_004599	human	genbank	54_36p	+1	reviewed	missense	c.1660	p.V554M	1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors
LOC100127982	100127982	genome.wustl.edu	36	8	98935051	98935051	+	RNA	SNP	A	A	T			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	98935051	98935051	A	T	SNP	LOC100127982	XR_039024	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.657	-	-	-	pseudogene
QRICH2	84074	genome.wustl.edu	36	17	71800160	71800162	+	In_Frame_Del	DEL	TGA	TGA	-			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	TGA	TGA			TGA	TGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	71800160	71800162	TGA	-	DEL	QRICH2	NM_032134	human	genbank	54_36p	-1	provisional	in_frame_del	c.1745_1743	p.H581in_frame_del	0.012:0.018:0.017	NULL	NULL	-	no_errors
uc003lhy.1	0	genome.wustl.edu	36	5	140222636	140222636	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140222636	140222636	C	-	DEL	uc003lhy.1	ENST00000319589	human	ensembl	54_36p	-1	known	frame_shift_del	c.524	p.G175fs	1.000	NULL	NULL	-	no_errors
DAGLB	221955	genome.wustl.edu	36	7	6442629	6442629	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	6442629	6442629	G	A	SNP	DAGLB	NM_139179	human	genbank	54_36p	-1	validated	missense	c.308	p.A103V	0.018	NULL	HMMPfam_Lipase_3,superfamily_alpha/beta-Hydrolases	-	no_errors
ADPGK	83440	genome.wustl.edu	36	15	70832206	70832206	+	Silent	SNP	A	A	G			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	70832206	70832206	A	G	SNP	ADPGK	NM_031284	human	genbank	54_36p	-1	validated	silent	c.1020	p.S340	0.316	superfamily_SSF53613,HMMPfam_ADP_PFK_GK	superfamily_SSF53613,HMMPfam_ADP_PFK_GK	-	no_errors
LOC728138	728138	genome.wustl.edu	36	16	14990830	14990830	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	14990830	14990830	T	C	SNP	LOC728138	XM_001128282	human	genbank	54_36p	-1	model	missense	c.689	p.K230R	0.200	HMMPfam_DUF2152	HMMPfam_DUF2152	-	no_errors
DDX11	1663	genome.wustl.edu	36	12	31134136	31134136	+	Silent	SNP	G	G	A			TCGA-AB-2832-03B-01W-0728-08	TCGA-AB-2832-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	31134136	31134136	G	A	SNP	DDX11	NM_152438	human	genbank	54_36p	+1	reviewed	silent	c.930	p.E310	0.981	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMPfam_DEAD_2	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMPfam_DEAD_2,HMMSmart_SM00491	-	no_errors
