Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
FLT3	2322	genome.wustl.edu	36	13	27506267	27506268	+	In_Frame_Ins	INS	-	-	TTCTCTGAAATCAACGTAGAAGTACTCATTATC			TCGA-AB-2836-03B-01W-0728-08	TCGA-AB-2836-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27506267	27506268	-	TTCTCTGAAATCAACGTAGAAGTACTCATTATC	INS	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1789_1788	p.596in_frame_insDNEYFYVDFRE	0.789:0.794	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
DMBT1	1755	genome.wustl.edu	36	10	124349314	124349314	+	Silent	SNP	G	G	A			TCGA-AB-2836-03B-01W-0728-08	TCGA-AB-2836-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	124349314	124349314	G	A	SNP	DMBT1	ENST00000398134	human	ensembl	54_36p	+1	known	silent	c.2589	p.Q863	0.001	superfamily_Srcr_receptor	superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR,PatternScan_SRCR_1,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,HMMPfam_Zona_pellucida,HMMSmart_ZP,PatternScan_ZP_1	-	no_errors
IKZF4	64375	genome.wustl.edu	36	12	54703753	54703753	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2836-03B-01W-0728-08	TCGA-AB-2836-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	54703753	54703753	C	T	SNP	IKZF4	NM_022465	human	genbank	54_36p	+1	validated	missense	c.119	p.P40L	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2836-03B-01W-0728-08	TCGA-AB-2836-11B-01W-0729-08					-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
STAB1	23166	genome.wustl.edu	36	3	52515833	52515833	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2836-03B-01W-0728-08	TCGA-AB-2836-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	52515833	52515833	G	A	SNP	STAB1	NM_015136	human	genbank	54_36p	+1	reviewed	missense	c.1916	p.G639D	0.970	superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,HMMSmart_SM00180,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_FAS1 domain,HMMSmart_SM00554,HMMPfam_Fasciclin,PatternScan_CYTOCHROME_P450,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_LAM_1,HMMPfam_Laminin_EGF,superfamily_Growth factor receptor domain,HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like,PatternScan_LINK_1	-	no_errors
RSG1	79363	genome.wustl.edu	36	1	16432814	16432814	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2836-03B-01W-0728-08	TCGA-AB-2836-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16432814	16432814	C	T	SNP	C1orf89	NM_030907	human	genbank	54_36p	-1	predicted	missense	c.145	p.V49M	0.943	NULL	superfamily_SSF52540,HMMPfam_Miro	-	no_errors
LOC646755	646755	genome.wustl.edu	36	13	30014522	30014522	+	RNA	SNP	T	T	C			TCGA-AB-2836-03B-01W-0728-08	TCGA-AB-2836-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	30014522	30014522	T	C	SNP	LOC646755	XR_037386	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ENSG00000204788	0	genome.wustl.edu	36	9	68670175	68670175	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2836-03B-01W-0728-08	TCGA-AB-2836-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	68670175	68670175	A	G	SNP	ENSG00000204788	ENST00000377437	human	ensembl	54_36p	-1	known	missense	c.76	p.C26R	0.000	NULL	NULL	-	no_errors
LOC340900	340900	genome.wustl.edu	36	10	22538490	22538491	+	In_Frame_Ins	INS	-	-	AGA			TCGA-AB-2836-03B-01W-0728-08	TCGA-AB-2836-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	22538490	22538491	-	AGA	INS	LOC340900	XM_291767	human	genbank	54_36p	-1	model	in_frame_ins	c.429_428	p.144in_frame_insL	0.000:0.000	HMMPfam_BDV_P40,superfamily_P40 nucleoprotein	HMMPfam_BDV_P40,superfamily_P40 nucleoprotein	-	no_errors
PTPN11	5781	genome.wustl.edu	36	12	111372582	111372582	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2836-03B-01W-0728-08	TCGA-AB-2836-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	111372582	111372582	C	T	SNP	PTPN11	NM_002834	human	genbank	54_36p	+1	reviewed	missense	c.215	p.A72V	1.000	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_SH2 domain	-	no_errors
WDR64	128025	genome.wustl.edu	36	1	239913452	239913453	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-AB-2836-03B-01W-0728-08	TCGA-AB-2836-11B-01W-0729-08	TG	TG			TG	TG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	239913452	239913453	TG	-	DEL	WDR64	ENST00000366552	human	ensembl	54_36p	+1	known	frame_shift_del	c.635_636	p.C215fs	0.999:0.994	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1	-	no_errors
ENSG00000200544	0	genome.wustl.edu	36	9	33342826	33342827	+	RNA	INS	-	-	AAA			TCGA-AB-2836-03B-01W-0728-08	TCGA-AB-2836-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	33342826	33342827	-	AAA	INS	ENSG00000200544	ENST00000363674	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0.178:0.161	-	-	-	no_errors
OLFML3	56944	genome.wustl.edu	36	1	114323708	114323708	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2836-03B-01W-0728-08	TCGA-AB-2836-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	114323708	114323708	C	T	SNP	OLFML3	NM_020190	human	genbank	54_36p	+1	validated	missense	c.47	p.S16L	0.000	NULL	HMMPfam_OLF,HMMSmart_SM00284	-	no_errors
