Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
RFC3	5983	genome.wustl.edu	36	13	33307285	33307285	+	Silent	SNP	G	G	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	33307285	33307285	G	A	SNP	RFC3	NM_002915	human	genbank	54_36p	+1	reviewed	silent	c.810	p.R270	0.995	superfamily_DNA polymerase III clamp loader subunits C-terminal domain,HMMPfam_RFC-E_C	HMMSmart_SM00382,superfamily_DNA polymerase III clamp loader subunits C-terminal domain,HMMPfam_RFC-E_C,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PDE4A	5141	genome.wustl.edu	36	19	10389494	10389494	+	Silent	SNP	G	G	T			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	10389494	10389494	G	T	SNP	PDE4A	ENST00000380702	human	ensembl	54_36p	+1	known	silent	c.207	p.P69	0.941	NULL	superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
FEZF2	55079	genome.wustl.edu	36	3	62331988	62331988	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	62331988	62331988	T	A	SNP	FEZF2	NM_018008	human	genbank	54_36p	-1	validated	missense	c.1064	p.H355L	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
NRAS	4893	genome.wustl.edu	36	1	115058051	115058051	+	Missense_Mutation	SNP	T	T	A	rs11554290	byCluster;byHapMap	TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	115058051	115058051	T	A	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	missense	c.183	p.Q61H	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KLHL18	23276	genome.wustl.edu	36	3	47360205	47360205	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	47360205	47360205	T	C	SNP	KLHL18	NM_025010	human	genbank	54_36p	+1	validated	missense	c.1495	p.S499P	1.000	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors
ANO2	57101	genome.wustl.edu	36	12	5542827	5542827	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	5542827	5542827	C	A	SNP	ANO2	NM_020373	human	genbank	54_36p	-1	validated	missense	c.2899	p.G967C	0.000	NULL	HMMPfam_DUF590	-	no_errors
LOC390597	390597	genome.wustl.edu	36	15	64887892	64887892	+	RNA	SNP	G	G	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	64887892	64887892	G	A	SNP	LOC390597	XR_017154	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
GUCY2C	2984	genome.wustl.edu	36	12	14689506	14689506	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	14689506	14689506	T	A	SNP	GUCY2C	NM_004963	human	genbank	54_36p	-1	validated	missense	c.1721	p.N574I	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
FAM5C	339479	genome.wustl.edu	36	1	188334865	188334865	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	188334865	188334865	G	A	SNP	FAM5C	NM_199051	human	genbank	54_36p	-1	provisional	missense	c.1207	p.R403C	0.986	NULL	HMMPfam_MACPF,HMMSmart_SM00457	-	no_errors
KIF2B	84643	genome.wustl.edu	36	17	49255533	49255533	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	49255533	49255533	C	T	SNP	KIF2B	NM_032559	human	genbank	54_36p	+1	validated	missense	c.140	p.T47M	0.977	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
LOC100130134	100130134	genome.wustl.edu	36	X	89181766	89181766	+	RNA	SNP	C	C	G			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	89181766	89181766	C	G	SNP	LOC100130134	XR_037810	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
TBC1D21	161514	genome.wustl.edu	36	15	71964459	71964459	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	71964459	71964459	G	C	SNP	TBC1D21	NM_153356	human	genbank	54_36p	+1	provisional	missense	c.541	p.E181Q	1.000	superfamily_RabGAP_TBC,HMMSmart_TBC	superfamily_RabGAP_TBC,HMMSmart_TBC	-	no_errors
PTPN5	84867	genome.wustl.edu	36	11	18718847	18718847	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	18718847	18718847	T	C	SNP	PTPN5	NM_006906	human	genbank	54_36p	-1	validated	missense	c.794	p.Y265C	0.865	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
PYGO2	90780	genome.wustl.edu	36	1	153198033	153198033	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	153198033	153198033	C	G	SNP	PYGO2	NM_138300	human	genbank	54_36p	-1	validated	missense	c.1067	p.R356P	0.995	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7520037	7520037	+	Silent	SNP	C	C	T			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7520037	7520037	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	silent	c.375	p.T125	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
C6orf211	79624	genome.wustl.edu	36	6	151817475	151817475	+	Silent	SNP	C	C	T			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	151817475	151817475	C	T	SNP	C6orf211	NM_024573	human	genbank	54_36p	+1	predicted	silent	c.141	p.H47	1.000	HMMPfam_DUF89,superfamily_DUF89	HMMPfam_DUF89,superfamily_DUF89	-	no_errors
ARHGEF11	9826	genome.wustl.edu	36	1	155220785	155220785	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	155220785	155220785	G	A	SNP	ARHGEF11	NM_198236	human	genbank	54_36p	-1	reviewed	missense	c.193	p.R65C	1.000	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,HMMSmart_RGS,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMSmart_PH	-	no_errors
OGDHL	55753	genome.wustl.edu	36	10	50636573	50636573	+	Silent	SNP	G	G	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	50636573	50636573	G	A	SNP	OGDHL	NM_018245	human	genbank	54_36p	-1	validated	silent	c.72	p.V24	0.001	NULL	superfamily_SSF52518,HMMPfam_E1_dh,HMMPfam_Transket_pyr	-	no_errors
PLXNB1	5364	genome.wustl.edu	36	3	48426931	48426931	+	Silent	SNP	G	G	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	48426931	48426931	G	A	SNP	PLXNB1	NM_002673	human	genbank	54_36p	-1	validated	silent	c.5457	p.D1819	0.995	HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,PatternScan_IG_MHC,superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP,PatternScan_LIPOCALIN	-	no_errors
PADI2	11240	genome.wustl.edu	36	1	17291560	17291560	+	Silent	SNP	G	G	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	17291560	17291560	G	A	SNP	PADI2	NM_007365	human	genbank	54_36p	-1	reviewed	silent	c.585	p.P195	0.011	HMMPfam_PAD_M,superfamily_PAD_central	HMMPfam_PAD_N,superfamily_Cupredoxin,HMMPfam_PAD_M,superfamily_PAD_central,HMMPfam_PAD,superfamily_SSF55909	-	no_errors
FAM5C	339479	genome.wustl.edu	36	1	188517414	188517414	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	188517414	188517414	C	T	SNP	FAM5C	NM_199051	human	genbank	54_36p	-1	provisional	missense	c.326	p.R109H	1.000	HMMPfam_MACPF,HMMSmart_SM00457	HMMPfam_MACPF,HMMSmart_SM00457	-	no_errors
CUL1	8454	genome.wustl.edu	36	7	148085114	148085114	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	148085114	148085114	A	G	SNP	CUL1	NM_003592	human	genbank	54_36p	+1	validated	missense	c.422	p.N141S	1.000	superfamily_Cullin repeat,HMMPfam_Cullin	"superfamily_Cullin repeat,HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Cullin_Nedd8,PatternScan_CULLIN_1"	-	no_errors
