Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
MRC2	9902	genome.wustl.edu	36	17	58120001	58120001	+	Silent	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	58120001	58120001	C	T	SNP	MRC2	NM_006039	human	genbank	54_36p	+1	validated	silent	c.3282	p.D1094	0.998	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,PatternScan_LIPOCALIN	-	no_errors
BEST2	54831	genome.wustl.edu	36	19	12727209	12727209	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	12727209	12727209	G	A	SNP	BEST2	NM_017682	human	genbank	54_36p	+1	reviewed	missense	c.653	p.R218Q	1.000	HMMPfam_Bestrophin	HMMPfam_Bestrophin	-	no_errors
CCT6B	10693	genome.wustl.edu	36	17	30293950	30293950	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	30293950	30293950	C	T	SNP	CCT6B	NM_006584	human	genbank	54_36p	-1	reviewed	missense	c.703	p.V235I	1.000	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like	PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like	-	no_errors
OR5H6	79295	genome.wustl.edu	36	3	99466178	99466186	+	In_Frame_Del	DEL	TGTAACCAC	TGTAACCAC	-			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	TGTAACCAC	TGTAACCAC			TGTAACCAC	TGTAACCAC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	99466178	99466186	TGTAACCAC	-	DEL	OR5H6	NM_001005479	human	genbank	54_36p	+1	provisional	in_frame_del	c.360_368	p.VTT124in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
SPACA7	122258	genome.wustl.edu	36	13	112081011	112081011	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	112081011	112081011	A	C	SNP	C13orf28	ENST00000375700	human	ensembl	54_36p	+1	known	missense	c.17	p.H6P	0.000	NULL	NULL	-	no_errors
TRIM73	375593	genome.wustl.edu	36	7	74872191	74872191	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	74872191	74872191	T	C	SNP	TRIM73	NM_198924	human	genbank	54_36p	+1	provisional	missense	c.629	p.M210T	0.739	NULL	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX	-	no_errors
ENSG00000216560	0	genome.wustl.edu	36	4	3559545	3559545	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	3559545	3559545	T	C	SNP	ENSG00000216560	ENST00000404649	human	ensembl	54_36p	+1	known	missense	c.115	p.S39P	0.584	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region
LOC729915	729915	genome.wustl.edu	36	5	34226564	34226564	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	34226564	34226564	C	T	SNP	LOC729915	XM_001722873	human	genbank	54_36p	+1	model	missense	c.547	p.R183W	0.313	NULL	NULL	-	no_errors
CELSR2	1952	genome.wustl.edu	36	1	109610002	109610002	+	Silent	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	109610002	109610002	C	T	SNP	CELSR2	NM_001408	human	genbank	54_36p	+1	reviewed	silent	c.5850	p.I1950	1.000	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1	PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF_CA,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,PatternScan_ASX_HYDROXYL,HMMSmart_TNFR,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMSmart_HormR,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2	-	no_errors
C2orf70	339778	genome.wustl.edu	36	2	26655796	26655796	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	26655796	26655796	G	A	SNP	C2orf70	NM_001105519	human	genbank	54_36p	+1	predicted	missense	c.592	p.E198K	1.000	NULL	HMMPfam_DUF2475	-	no_errors
FRAS1	80144	genome.wustl.edu	36	4	79395468	79395468	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	79395468	79395468	G	A	SNP	FRAS1	ENST00000380674	human	ensembl	54_36p	+1	known	missense	c.518	p.R173Q	0.007	HMMPfam_VWC,HMMSmart_SM00214,HMMSmart_SM00215	HMMSmart_SM00214,HMMSmart_SM00215,PatternScan_VWFC_1,HMMPfam_VWC,superfamily_Growth factor receptor domain,HMMSmart_SM00261,HMMSmart_SM00181,HMMSmart_SM00237,HMMPfam_Calx-beta	-	no_errors
LOC646294	646294	genome.wustl.edu	36	6	43614980	43614980	+	RNA	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	43614980	43614980	C	T	SNP	LOC646294	XR_017657	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ENSG00000204788	0	genome.wustl.edu	36	9	68670155	68670155	+	Silent	SNP	G	G	A			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	68670155	68670155	G	A	SNP	ENSG00000204788	ENST00000377437	human	ensembl	54_36p	-1	known	silent	c.96	p.A32	0.000	NULL	NULL	-	no_errors
GSTM3	2947	genome.wustl.edu	36	1	110084413	110084413	+	Missense_Mutation	SNP	A	A	G	rs67174253	byFrequency	TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	110084413	110084413	A	G	SNP	GSTM3	NM_000849	human	genbank	54_36p	-1	reviewed	missense	c.20	p.M7T	0.997	HMMPfam_GST_N,superfamily_Thioredoxin-like	HMMPfam_GST_N,HMMPfam_GST_C,superfamily_Glutathione S-transferase (GST) C-terminal domain,superfamily_Thioredoxin-like	-	no_errors
AQP7P2	389756	genome.wustl.edu	36	9	68924576	68924576	+	RNA	SNP	T	T	C			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	68924576	68924576	T	C	SNP	AQP7P2	NR_002823	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.015	-	-	-	pseudogene
LOC100129697	100129697	genome.wustl.edu	36	16	87544887	87544887	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	87544887	87544887	T	C	SNP	LOC100129697	XM_001715229	human	genbank	54_36p	+1	model	missense	c.860	p.V287A	0.771	NULL	NULL	-	no_errors
LOC646090	646090	genome.wustl.edu	36	15	18736999	18736999	+	RNA	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	18736999	18736999	C	T	SNP	LOC646090	XR_017120	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC728047	728047	genome.wustl.edu	36	15	30526013	30526013	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	30526013	30526013	C	T	SNP	LOC728047	XM_001126912	human	genbank	54_36p	-1	model	missense	c.1322	p.R441Q	0.012	NULL	NULL	-	no_errors
RECQL5	9400	genome.wustl.edu	36	17	71170367	71170367	+	Silent	SNP	G	G	C			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	71170367	71170367	G	C	SNP	RECQL5	NM_004259	human	genbank	54_36p	-1	validated	silent	c.558	p.A186	0.916	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_RecQ5,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150545179	150545179	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	150545179	150545179	T	C	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.8807	p.D2936G	0.000	NULL	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
OR10G9	219870	genome.wustl.edu	36	11	123399011	123399011	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	123399011	123399011	A	G	SNP	OR10G9	NM_001001953	human	genbank	54_36p	+1	provisional	missense	c.82	p.I28V	0.000	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
DBH	1621	genome.wustl.edu	36	9	135491390	135491390	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	135491390	135491390	G	A	SNP	DBH	NM_000787	human	genbank	54_36p	+1	reviewed	missense	c.76	p.V26M	0.421	NULL	HMMSmart_DoH,HMMPfam_DOMON,superfamily_PHM_PNGase_F,HMMPfam_Cu2_monooxygen,PatternScan_CU2_MONOOXYGENASE_1,HMMPfam_Cu2_monoox_C,PatternScan_CU2_MONOOXYGENASE_2	-	no_errors
NEO1	4756	genome.wustl.edu	36	15	71332792	71332792	+	Splice_Site	SNP	A	A	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	71332792	71332792	A	T	SNP	NEO1	NM_002499	human	genbank	54_36p	+1	validated	splice_site	c.1895-2	e12-2	0.998	-	-	-	no_errors
ANAPC4	29945	genome.wustl.edu	36	4	24993979	24993979	+	Splice_Site	SNP	A	A	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	24993979	24993979	A	T	SNP	ANAPC4	NM_013367	human	genbank	54_36p	+1	reviewed	splice_site	c.236-2	e3-2	1.000	-	-	-	no_errors
ALDH3B2	222	genome.wustl.edu	36	11	67189375	67189375	+	Silent	SNP	G	G	A			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	67189375	67189375	G	A	SNP	ALDH3B2	NM_000695	human	genbank	54_36p	-1	reviewed	silent	c.663	p.R221	0.000	HMMPfam_Aldedh,superfamily_ALDH-like	HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_ALDH-like	-	no_errors
CERCAM	51148	genome.wustl.edu	36	9	130236659	130236659	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	130236659	130236659	G	A	SNP	CERCAM	NM_016174	human	genbank	54_36p	+1	validated	missense	c.1247	p.R416H	0.588	HMMPfam_Glyco_transf_25	HMMPfam_Glyco_transf_25,PatternScan_ER_TARGET	-	no_errors
LRBA	987	genome.wustl.edu	36	4	152057110	152057110	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	152057110	152057110	G	C	SNP	LRBA	NM_006726	human	genbank	54_36p	-1	validated	missense	c.787	p.L263V	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_ARM repeat	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
POTEE	445582	genome.wustl.edu	36	2	131738416	131738416	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	131738416	131738416	G	A	SNP	POTEE	NM_001083538	human	genbank	54_36p	+1	validated	missense	c.2918	p.G973D	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
DNPEP	23549	genome.wustl.edu	36	2	219959332	219959332	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	219959332	219959332	C	T	SNP	DNPEP	NM_012100	human	genbank	54_36p	-1	reviewed	missense	c.379	p.G127S	0.725	HMMPfam_Peptidase_M18,superfamily_SSF53187	HMMPfam_Peptidase_M18,superfamily_SSF53187	-	no_errors
PANK4	55229	genome.wustl.edu	36	1	2447870	2447870	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	2447870	2447870	G	C	SNP	PANK4	NM_018216	human	genbank	54_36p	-1	reviewed	missense	c.17	p.A6G	0.714	NULL	HMMPfam_DUF89,superfamily_Hypothetical protein At2g17340,HMMPfam_Fumble	-	no_errors
ETNK2	55224	genome.wustl.edu	36	1	202385465	202385465	+	Silent	SNP	G	G	A			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	202385465	202385465	G	A	SNP	ETNK2	NM_018208	human	genbank	54_36p	-1	reviewed	silent	c.507	p.P169	0.142	HMMPfam_Choline_kinase,superfamily_Kinase_like	HMMPfam_Choline_kinase,superfamily_Kinase_like	-	no_errors
TBC1D10A	83874	genome.wustl.edu	36	22	29021023	29021023	+	Silent	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	29021023	29021023	C	T	SNP	TBC1D10A	NM_031937	human	genbank	54_36p	-1	provisional	silent	c.546	p.V182	0.998	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMSmart_SM00164,HMMPfam_TBC	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMSmart_SM00164,HMMPfam_TBC	-	no_errors
NTN4	59277	genome.wustl.edu	36	12	94704998	94704998	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	94704998	94704998	G	T	SNP	NTN4	NM_021229	human	genbank	54_36p	-1	validated	missense	c.435	p.D145E	0.998	HMMPfam_Laminin_N,HMMSmart_SM00136	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_TIMP-like,PatternScan_EGF_1,HMMPfam_NTR,HMMSmart_SM00643,superfamily_EGF/Laminin	-	no_errors
ENSG00000204734	0	genome.wustl.edu	36	2	89100687	89100687	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	89100687	89100687	C	T	SNP	ENSG00000204734	ENST00000377239	human	ensembl	54_36p	-1	known	missense	c.278	p.G93E	0.991	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	-	no_start_codon:no_stop_codon
TSTA3	7264	genome.wustl.edu	36	8	144769912	144769912	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2840-03D-01W-0755-09	TCGA-AB-2840-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	8	144769912	144769912	C	A	SNP	TSTA3	NM_003313	human	genbank	54_36p	-1	reviewed	missense	c.114	p.W38C	1.000	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Epimerase	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Epimerase	-	no_errors
OR2T34	127068	genome.wustl.edu	36	1	246804134	246804134	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	246804134	246804134	A	G	SNP	OR2T34	NM_001001821	human	genbank	54_36p	-1	provisional	missense	c.548	p.F183S	0.998	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
AAK1	22848	genome.wustl.edu	36	2	69595258	69595260	+	In_Frame_Del	DEL	TGT	TGT	-			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	TGT	TGT			TGT	TGT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	69595258	69595260	TGT	-	DEL	AAK1	NM_014911	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1625_1623	p.Q545in_frame_del	1.000:0.998:0.985	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	-	no_errors
IRX2	153572	genome.wustl.edu	36	5	2801664	2801664	+	Silent	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	2801664	2801664	C	T	SNP	IRX2	NM_033267	human	genbank	54_36p	-1	validated	silent	c.1158	p.S386	1.000	NULL	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMSmart_IRO	-	no_errors
DNM1P33	554175	genome.wustl.edu	36	15	72143117	72143117	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	72143117	72143117	A	C	SNP	DNM1P33	ENST00000339692	human	ensembl	54_36p	+1	known	missense	c.242	p.N81T	1.000	HMMPfam_GED	HMMPfam_GED	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506248	27506249	+	In_Frame_Ins	INS	-	-	ATTTGAGATCATATTCAT			TCGA-AB-2840-03D-01W-0755-09	TCGA-AB-2840-11D-01W-0755-09					-	-	Verified	Valid	Somatic		Capture				Illumina HiSeq																ITD-check	NA	NA	NA	NA	NA
DNAH17	8632	genome.wustl.edu	36	17	74013051	74013051	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	74013051	74013051	T	G	SNP	DNAH17	ENST00000300671	human	ensembl	54_36p	-1	known	missense	c.4866	p.K1622N	0.703	HMMPfam_DHC_N2	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy	-	no_errors
ARIH2	10425	genome.wustl.edu	36	3	48979691	48979691	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	48979691	48979691	G	A	SNP	ARIH2	NM_006321	human	genbank	54_36p	+1	provisional	missense	c.517	p.V173I	1.000	superfamily_RING/U-box	HMMSmart_SM00184,HMMPfam_IBR,HMMSmart_SM00647,PatternScan_ZF_RING_1,superfamily_RING/U-box	-	no_errors
HVCN1	84329	genome.wustl.edu	36	12	109583415	109583415	+	Silent	SNP	T	T	G			TCGA-AB-2840-03D-01W-0755-09	TCGA-AB-2840-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	12	109583415	109583415	T	G	SNP	HVCN1	NM_001040107	human	genbank	54_36p	-1	validated	silent	c.243	p.A81	0.007	superfamily_Voltage-gated potassium channels	superfamily_Voltage-gated potassium channels	-	no_errors
PEX10	5192	genome.wustl.edu	36	1	2330033	2330033	+	Silent	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	2330033	2330033	C	T	SNP	PEX10	NM_153818	human	genbank	54_36p	-1	reviewed	silent	c.318	p.L106	1.000	HMMPfam_Pex2_Pex12	HMMPfam_Pex2_Pex12,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
KCNJ12	3768	genome.wustl.edu	36	17	21259375	21259375	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	21259375	21259375	G	A	SNP	KCNJ12	NM_021012	human	genbank	54_36p	+1	validated	missense	c.128	p.R43H	1.000	HMMPfam_IRK_N,superfamily_SSF81324	HMMPfam_IRK,HMMPfam_IRK_N,superfamily_Ig_E-set,superfamily_SSF81324	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184353212	184353212	+	Splice_Site	SNP	A	A	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	184353212	184353212	A	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	+1	reviewed	splice_site	c.11684-2	e77-2	1.000	-	-	-	no_errors
LOC399491	399491	genome.wustl.edu	36	16	15105958	15105958	+	RNA	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	15105958	15105958	C	T	SNP	LOC399491	XR_041580	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	no_errors
ZBED1	9189	genome.wustl.edu	36	X	2418437	2418437	+	Silent	SNP	G	G	A			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	2418437	2418437	G	A	SNP	ZBED1	NM_004729	human	genbank	54_36p	-1	validated	silent	c.324	p.D108	0.204	NULL	HMMSmart_ZnF_BED,HMMPfam_zf-BED,HMMPfam_hATC	-	no_errors
LOC728612	728612	genome.wustl.edu	36	5	129505314	129505315	+	RNA	DEL	AG	AG	-			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	AG	AG			AG	AG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	129505314	129505315	AG	-	DEL	LOC728612	XR_015601	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
HLA-DRB1	3123	genome.wustl.edu	36	6	32656523	32656523	+	Silent	SNP	G	G	A			TCGA-AB-2840-03D-01W-0755-09	TCGA-AB-2840-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	6	32656523	32656523	G	A	SNP	HLA-DRB1	NM_002124	human	genbank	54_36p	-1	reviewed	silent	c.741	p.F247	0.959	NULL	superfamily_MHC antigen-recognition domain,HMMPfam_MHC_II_beta,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-	no_errors
LOC645771	645771	genome.wustl.edu	36	13	18859981	18859981	+	RNA	SNP	G	G	A			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	18859981	18859981	G	A	SNP	LOC645771	XR_017036	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.004	-	-	-	pseudogene
CYP2G1P	22952	genome.wustl.edu	36	19	46250210	46250210	+	Splice_Site	SNP	C	C	A			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	46250210	46250210	C	A	SNP	CYP2G1P	ENST00000388774	human	ensembl	54_36p	-1	known	splice_site	c.1-1	e1-1	1.000	-	-	-	no_start_codon:no_stop_codon
ENSG00000215615	0	genome.wustl.edu	36	NT_113889	39913	39913	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113889	39913	39913	C	T	SNP	ENSG00000215615	ENST00000400681	human	ensembl	54_36p	-1	known	missense	c.404	p.R135Q	NULL	HMMPfam_Tektin	HMMPfam_Tektin	-	no_stop_codon
LOC642538	642538	genome.wustl.edu	36	10	81781886	81781886	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	81781886	81781886	G	A	SNP	LOC642538	XM_926027	human	genbank	54_36p	-1	model	missense	c.244	p.P82S	0.907	HMMPfam_Sas10_Utp3	HMMPfam_Sas10_Utp3	-	no_errors
LMBR1	64327	genome.wustl.edu	36	7	156378390	156378390	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	156378390	156378390	T	C	SNP	LMBR1	NM_022458	human	genbank	54_36p	-1	reviewed	missense	c.59	p.E20G	1.000	NULL	HMMPfam_LMBR1	-	no_errors
NLRP3	114548	genome.wustl.edu	36	1	245654605	245654605	+	Silent	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	245654605	245654605	C	T	SNP	NLRP3	NM_001079821	human	genbank	54_36p	+1	reviewed	silent	c.1237	p.L413	0.989	NULL	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047,HMMSmart_LRR_RI,HMMPfam_LRR_1	-	no_errors
DUOX2	50506	genome.wustl.edu	36	15	43191395	43191395	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	43191395	43191395	C	T	SNP	DUOX2	NM_014080	human	genbank	54_36p	-1	reviewed	missense	c.376	p.A126T	1.000	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases	HMMPfam_An_peroxidase,HMMSmart_SM00054,superfamily_Heme-dependent peroxidases,HMMPfam_FAD_binding_8,HMMPfam_NAD_binding_6,HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	-	no_errors
RP1L1	94137	genome.wustl.edu	36	8	10502562	10502562	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2840-03D-01W-0755-09	TCGA-AB-2840-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	8	10502562	10502562	A	C	SNP	RP1L1	NM_178857	human	genbank	54_36p	-1	validated	missense	c.6456	p.D2152E	0.009	HMMPfam_S-antigen	superfamily_SSF89837,HMMPfam_DCX,HMMPfam_S-antigen	-	no_errors
ARID3A	1820	genome.wustl.edu	36	19	917584	917584	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	917584	917584	C	T	SNP	ARID3A	NM_005224	human	genbank	54_36p	+1	reviewed	missense	c.1211	p.A404V	0.792	NULL	HMMPfam_ARID,HMMSmart_BRIGHT,superfamily_ARID	-	no_errors
MAP2K3	5606	genome.wustl.edu	36	17	21148428	21148428	+	Silent	SNP	G	G	A			TCGA-AB-2840-03D-01W-0755-09	TCGA-AB-2840-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	21148428	21148428	G	A	SNP	MAP2K3	NM_145109	human	genbank	54_36p	+1	reviewed	silent	c.666	p.T222	0.546	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
DGAT2	84649	genome.wustl.edu	36	11	75185906	75185906	+	Silent	SNP	T	T	C			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	75185906	75185906	T	C	SNP	DGAT2	NM_032564	human	genbank	54_36p	+1	validated	silent	c.690	p.S230	0.941	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors
SNORD115-48	100033822	genome.wustl.edu	36	15	23066088	23066088	+	RNA	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	23066088	23066088	C	T	SNP	SNORD115-48	NR_003362	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.001	-	-	-	no_errors
MST1P9	11223	genome.wustl.edu	36	1	16956739	16956739	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16956739	16956739	C	T	SNP	MSTP9	ENST00000334998	human	ensembl	54_36p	-1	known	missense	c.1769	p.G590D	1.000	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Trypsin,HMMSmart_SM00020,HMMPfam_PAN_1,HMMSmart_SM00473,superfamily_Trypsin-like serine proteases,superfamily_Kringle-like,PatternScan_KRINGLE_1,superfamily_Hairpin loop containing domain-like	-	no_errors
OR4D2	124538	genome.wustl.edu	36	17	53602305	53602305	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	53602305	53602305	G	C	SNP	OR4D2	NM_001004707	human	genbank	54_36p	+1	provisional	missense	c.290	p.C97S	1.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
POM121C	100101267	genome.wustl.edu	36	7	74889409	74889409	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2840-03D-01W-0755-09	TCGA-AB-2840-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	7	74889409	74889409	C	G	SNP	POM121C	NM_001099415	human	genbank	54_36p	-1	validated	missense	c.2062	p.G688R	0.135	NULL	NULL	-	no_errors
IL37	27178	genome.wustl.edu	36	2	113387065	113387065	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	113387065	113387065	C	T	SNP	IL1F7	NM_014439	human	genbank	54_36p	+1	reviewed	missense	c.5	p.S2F	0.081	NULL	HMMSmart_SM00125,superfamily_Cytokine,HMMPfam_IL1	-	no_errors
LOC390561	390561	genome.wustl.edu	36	15	28904276	28904276	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2840-03B-01W-0728-08	TCGA-AB-2840-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	28904276	28904276	G	T	SNP	LOC390561	XM_001726958	human	genbank	54_36p	+1	model	missense	c.4063	p.D1355Y	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
