Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
VRK3	51231	genome.wustl.edu	36	19	55190328	55190328	+	Silent	SNP	C	C	T			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	55190328	55190328	C	T	SNP	VRK3	NM_016440	human	genbank	54_36p	-1	reviewed	silent	c.696	p.K232	0.991	HMMSmart_SM00220	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506214	27506215	+	In_Frame_Ins	INS	-	-	TTACCAAACTCTAAATTTTCTCTTGGAAACTCCCATTTGAGATCATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCT			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	13	27506214	27506215	-	ttaccaaactctaaattttctcttggaaactcccatttgagatcatattcatattctctgaaatcaacgtagaagtactcattatct	INS	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	splice_region_ins	c.NULL	ITD-check	0.779:0.796	-	-	NA	NA
YWHAZ	7534	genome.wustl.edu	36	8	102030181	102030181	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	102030181	102030181	T	C	SNP	YWHAZ	NM_003406	human	genbank	54_36p	-1	reviewed	missense	c.113	p.N38S	1.000	superfamily_14-3-3 protein,HMMPfam_14-3-3,HMMSmart_SM00101	superfamily_14-3-3 protein,HMMPfam_14-3-3,HMMSmart_SM00101,PatternScan_1433_1,PatternScan_1433_2	-	no_errors
KCNA1	3736	genome.wustl.edu	36	12	4891072	4891072	+	Silent	SNP	C	C	T			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	4891072	4891072	C	T	SNP	KCNA1	NM_000217	human	genbank	54_36p	+1	reviewed	silent	c.267	p.F89	1.000	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	-	no_errors
LOC399804	399804	genome.wustl.edu	36	10	97939444	97939445	+	RNA	INS	-	-	ATC			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	97939444	97939445	-	ATC	INS	LOC399804	XR_016532	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.028:0.026	-	-	-	pseudogene
WT1	7490	genome.wustl.edu	36	11	32374486	32374487	+	Frame_Shift_Ins	INS	-	-	ACCGTACA			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	32374486	32374487	-	ACCGTACA	INS	WT1	NM_024426	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1142_1141	p.S381fs	0.996:0.996	HMMPfam_WT1	HMMPfam_WT1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LOC389000	389000	genome.wustl.edu	36	2	91440296	91440296	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	91440296	91440296	A	G	SNP	LOC389000	XM_371534	human	genbank	54_36p	-1	model	missense	c.1130	p.L377P	1.000	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	pseudogene
SENP7	57337	genome.wustl.edu	36	3	102619278	102619278	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	102619278	102619278	G	A	SNP	SENP7	NM_020654	human	genbank	54_36p	-1	validated	nonsense	c.331	p.R111*	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_Peptidase_C48	-	no_errors
LOC642131	642131	genome.wustl.edu	36	15	19974541	19974541	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	19974541	19974541	T	C	SNP	LOC642131	XM_001716834	human	genbank	54_36p	-1	model	missense	c.115	p.K39E	0.784	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	-	no_errors
SLC18A1	6570	genome.wustl.edu	36	8	20082748	20082748	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	20082748	20082748	C	T	SNP	SLC18A1	NM_003053	human	genbank	54_36p	-1	validated	missense	c.8	p.R3Q	0.065	NULL	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors
SMC5	23137	genome.wustl.edu	36	9	72110092	72110092	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	72110092	72110092	A	T	SNP	SMC5	NM_015110	human	genbank	54_36p	+1	validated	missense	c.1574	p.K525I	0.794	HMMPfam_SMC_N,superfamily_SSF52540	HMMPfam_SMC_N,superfamily_SSF52540	-	no_errors
FANCM	57697	genome.wustl.edu	36	14	44703333	44703333	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	44703333	44703333	G	A	SNP	FANCM	NM_020937	human	genbank	54_36p	+1	reviewed	missense	c.1603	p.G535S	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Restriction endonuclease-like,HMMPfam_ERCC4,superfamily_RuvA domain 2-like	-	no_errors
LOC100130211	100130211	genome.wustl.edu	36	X	85301946	85301946	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	85301946	85301946	G	A	SNP	LOC100130211	XM_001717632	human	genbank	54_36p	-1	model	missense	c.1055	p.A352V	1.000	NULL	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	-	pseudogene
C17orf97	400566	genome.wustl.edu	36	17	264000	264000	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	264000	264000	G	C	SNP	C17orf97	NM_001013672	human	genbank	54_36p	+1	validated	missense	c.1050	p.E350D	0.000	NULL	NULL	-	no_errors
GRIK3	2899	genome.wustl.edu	36	1	37057982	37057982	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	37057982	37057982	T	A	SNP	GRIK3	NM_000831	human	genbank	54_36p	-1	reviewed	missense	c.1815	p.E605D	0.998	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850,superfamily_SSF55620	-	no_errors
MUC17	140453	genome.wustl.edu	36	7	100478014	100478014	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	100478014	100478014	T	C	SNP	MUC17	NM_001040105	human	genbank	54_36p	+1	provisional	missense	c.12433	p.S4145P	0.000	superfamily_EGF/Laminin	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors
PRPF3	9129	genome.wustl.edu	36	1	148577342	148577342	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	148577342	148577342	T	C	SNP	PRPF3	NM_004698	human	genbank	54_36p	+1	reviewed	missense	c.1118	p.I373T	1.000	HMMPfam_PRP3	superfamily_PWI domain,HMMSmart_SM00311,HMMPfam_PWI,HMMPfam_PRP3	-	no_errors
PSME4	23198	genome.wustl.edu	36	2	53982167	53982167	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	53982167	53982167	C	A	SNP	PSME4	NM_014614	human	genbank	54_36p	-1	validated	missense	c.2767	p.G923C	1.000	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
TRA2B	6434	genome.wustl.edu	36	3	187126059	187126059	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	187126059	187126059	G	C	SNP	TRA2B	NM_004593	human	genbank	54_36p	-1	validated	missense	c.220	p.R74G	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
MAU2	23383	genome.wustl.edu	36	19	19326222	19326222	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	19326222	19326222	C	T	SNP	KIAA0892	NM_015329	human	genbank	54_36p	+1	validated	missense	c.1607	p.S536L	0.992	HMMPfam_Cohesin_load,superfamily_TPR-like	HMMPfam_Cohesin_load,superfamily_TPR-like,HMMSmart_SM00028	-	no_errors
PCDHB18	54660	genome.wustl.edu	36	5	140595924	140595924	+	Silent	SNP	C	C	A			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140595924	140595924	C	A	SNP	PCDHB18	ENST00000274705	human	ensembl	54_36p	+1	known	silent	c.1455	p.S485	0.981	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
SMC1A	8243	genome.wustl.edu	36	X	53458666	53458666	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2844-03B-01W-0728-08	TCGA-AB-2844-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	53458666	53458666	C	T	SNP	SMC1A	NM_006306	human	genbank	54_36p	-1	reviewed	missense	c.287	p.R96H	0.998	HMMPfam_SMC_N,superfamily_SSF52540	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540	-	no_errors
