Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ENSG00000204788	0	genome.wustl.edu	36	9	68670155	68670155	+	Silent	SNP	G	G	A			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	68670155	68670155	G	A	SNP	ENSG00000204788	ENST00000377437	human	ensembl	54_36p	-1	known	silent	c.96	p.A32	0.000	NULL	NULL	-	no_errors
LRIT1	26103	genome.wustl.edu	36	10	85983903	85983903	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	85983903	85983903	C	A	SNP	LRIT1	NM_015613	human	genbank	54_36p	-1	validated	missense	c.801	p.L267F	1.000	HMMSmart_IGc2,superfamily_SSF48726	HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_ig,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
ZNF681	148213	genome.wustl.edu	36	19	23719582	23719583	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	CA	CA			CA	CA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	23719582	23719583	CA	-	DEL	ZNF681	NM_138286	human	genbank	54_36p	-1	validated	frame_shift_del	c.610_609	p.C203fs	1.000:1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC100128115	100128115	genome.wustl.edu	36	18	72675406	72675406	+	RNA	SNP	A	A	T			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	72675406	72675406	A	T	SNP	LOC100128115	XR_037280	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ENTPD1	953	genome.wustl.edu	36	10	97597217	97597217	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	97597217	97597217	G	A	SNP	ENTPD1	NM_001098175	human	genbank	54_36p	+1	validated	missense	c.859	p.D287N	0.005	HMMPfam_GDA1_CD39	HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE	-	no_errors
LOC100131936	100131936	genome.wustl.edu	36	10	42025713	42025713	+	Silent	SNP	G	G	T			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	42025713	42025713	G	T	SNP	LOC100131936	XM_001724098	human	genbank	54_36p	+1	model	silent	c.453	p.G151	0.724	superfamily_RING/U-box	superfamily_RING/U-box,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
CLIP2	7461	genome.wustl.edu	36	7	73428914	73428914	+	Silent	SNP	C	C	T			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	73428914	73428914	C	T	SNP	CLIP2	NM_003388	human	genbank	54_36p	+1	reviewed	silent	c.2247	p.I749	0.992	NULL	HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Cap-Gly domain	-	no_errors
LOC644456	644456	genome.wustl.edu	36	2	58541604	58541604	+	RNA	SNP	C	C	T			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	58541604	58541604	C	T	SNP	LOC644456	XR_039438	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.005	-	-	-	pseudogene
DCHS2	54798	genome.wustl.edu	36	4	155473290	155473290	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	155473290	155473290	T	A	SNP	DCHS2	NM_017639	human	genbank	54_36p	-1	validated	missense	c.2023	p.S675C	1.000	HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
VN2R1P	344760	genome.wustl.edu	36	3	157237331	157237331	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	157237331	157237331	G	A	SNP	CASRL1	ENST00000312652	human	ensembl	54_36p	+1	known	missense	c.1430	p.R477K	0.173	HMMPfam_7tm_3	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822,HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3	-	no_errors
PLOD1	5351	genome.wustl.edu	36	1	11947397	11947397	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	11947397	11947397	G	A	SNP	PLOD1	NM_000302	human	genbank	54_36p	+1	reviewed	missense	c.1438	p.D480N	0.997	NULL	HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy,PatternScan_LYS_HYDROXYLASE	-	no_errors
TBC1D2B	23102	genome.wustl.edu	36	15	76077690	76077690	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	76077690	76077690	C	T	SNP	TBC1D2B	NM_015079	human	genbank	54_36p	-1	validated	missense	c.2329	p.D777N	1.000	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	-	no_errors
LOC389465	389465	genome.wustl.edu	36	7	12478570	12478570	+	RNA	SNP	C	C	A			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	12478570	12478570	C	A	SNP	LOC389465	XR_017210	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
HS3ST1	9957	genome.wustl.edu	36	4	11010116	11010116	+	Silent	SNP	C	C	T			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	11010116	11010116	C	T	SNP	HS3ST1	NM_005114	human	genbank	54_36p	-1	reviewed	silent	c.612	p.L204	0.999	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors
NPAS4	266743	genome.wustl.edu	36	11	65948991	65948991	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	65948991	65948991	A	G	SNP	NPAS4	NM_178864	human	genbank	54_36p	+1	validated	missense	c.2054	p.D685G	0.874	NULL	HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3	-	no_errors
FRAS1	80144	genome.wustl.edu	36	4	79407574	79407574	+	Silent	SNP	C	C	T			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	79407574	79407574	C	T	SNP	FRAS1	ENST00000380674	human	ensembl	54_36p	+1	known	silent	c.945	p.C315	1.000	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMSmart_SM00181,HMMSmart_SM00261,HMMSmart_SM00215,superfamily_Growth factor receptor domain	-	no_errors
PP8961	650662	genome.wustl.edu	36	14	91110595	91110595	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	91110595	91110595	C	T	SNP	PP8961	NM_001080113	human	genbank	54_36p	-1	validated	missense	c.115	p.A39T	0.015	NULL	NULL	-	no_errors
MNDA	4332	genome.wustl.edu	36	1	157082073	157082073	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	157082073	157082073	G	A	SNP	MNDA	NM_002432	human	genbank	54_36p	+1	reviewed	missense	c.643	p.V215M	0.003	HMMPfam_HIN	HMMPfam_PAAD_DAPIN,HMMPfam_HIN	-	no_errors
LOC392008	392008	genome.wustl.edu	36	7	27275629	27275629	+	RNA	SNP	C	C	T			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	27275629	27275629	C	T	SNP	LOC392008	XR_017366	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8921849	8921849	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	8921849	8921849	G	A	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.26597	p.S8866L	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
RYR1	6261	genome.wustl.edu	36	19	43679015	43679015	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	43679015	43679015	G	A	SNP	RYR1	NM_000540	human	genbank	54_36p	+1	reviewed	missense	c.6790	p.G2264S	1.000	HMMPfam_RYDR_ITPR	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
ADH1C	126	genome.wustl.edu	36	4	100492836	100492836	+	Splice_Site	SNP	A	A	T			TCGA-AB-2860-03B-01W-0728-08	TCGA-AB-2860-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	100492836	100492836	A	T	SNP	ADH1C	NM_000669	human	genbank	54_36p	-1	reviewed	splice_site	c.18+2	e1+2	1.000	-	-	-	pseudogene
