Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
KDM6A	7403	genome.wustl.edu	36	X	44807944	44807944	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	44807944	44807944	C	T	SNP	UTX	NM_021140	human	genbank	54_36p	+1	validated	missense	c.1861	p.R621C	1.000	NULL	HMMPfam_TPR_1,HMMSmart_JmjC,HMMPfam_JmjC,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
ARHGDIG	398	genome.wustl.edu	36	16	272759	272759	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	272759	272759	A	G	SNP	ARHGDIG	NM_001176	human	genbank	54_36p	+1	validated	missense	c.622	p.T208A	0.937	HMMPfam_Rho_GDI,superfamily_Ig_E-set	HMMPfam_Rho_GDI,superfamily_Ig_E-set	-	no_errors
IDH1	3417	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	208821358	208821358	G	A	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
PSMB10	5699	genome.wustl.edu	36	16	66527421	66527421	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	66527421	66527421	C	T	SNP	PSMB10	NM_002801	human	genbank	54_36p	-1	reviewed	missense	c.329	p.G110D	1.000	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome,PatternScan_PROTEASOME_B	-	no_errors
OR2M3	127062	genome.wustl.edu	36	1	246433759	246433759	+	Nonsense_Mutation	SNP	T	T	A			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	246433759	246433759	T	A	SNP	OR2M3	NM_001004689	human	genbank	54_36p	+1	provisional	nonsense	c.767	p.L256*	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
RIBC2	26150	genome.wustl.edu	36	22	44192246	44192246	+	Silent	SNP	G	G	A			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	44192246	44192246	G	A	SNP	RIBC2	NM_015653	human	genbank	54_36p	+1	validated	silent	c.93	p.Q31	0.149	HMMPfam_RIB43A	HMMPfam_RIB43A	-	no_errors
MST1P9	11223	genome.wustl.edu	36	1	16960129	16960133	+	Frame_Shift_Del	DEL	GTGCT	GTGCT	-			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	GTGCT	GTGCT			GTGCT	GTGCT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16960129	16960133	GTGCT	-	DEL	MSTP9	ENST00000334998	human	ensembl	54_36p	-1	known	frame_shift_del	c.123_119	p.Q40fs	0.887:0.863:0.855:0.990:0.991	HMMPfam_PAN_1,HMMSmart_SM00473,superfamily_Hairpin loop containing domain-like	HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Trypsin,HMMSmart_SM00020,HMMPfam_PAN_1,HMMSmart_SM00473,superfamily_Trypsin-like serine proteases,superfamily_Kringle-like,PatternScan_KRINGLE_1,superfamily_Hairpin loop containing domain-like	-	no_errors
PKD1	5310	genome.wustl.edu	36	16	2104212	2104212	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	2104212	2104212	G	A	SNP	PKD1	NM_001009944	human	genbank	54_36p	-1	reviewed	missense	c.2813	p.T938M	0.304	HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_LRR_1,HMMPfam_REJ,HMMPfam_WSC,HMMSmart_SM00369,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel,HMMSmart_SM00321,superfamily_C-type lectin-like,superfamily_L domain-like	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25322559	25322559	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25322559	25322559	T	C	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.1403	p.K468R	1.000	NULL	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100510315	100510315	+	Silent	SNP	C	C	T			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	100510315	100510315	C	T	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	silent	c.4761	p.Q1587	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25312191	25312191	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25312191	25312191	T	C	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2486	p.K829R	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
LOC100131447	100131447	genome.wustl.edu	36	7	48857098	48857099	+	RNA	INS	-	-	A			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	48857098	48857099	-	A	INS	LOC100131447	XR_036885	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
PCSK9	255738	genome.wustl.edu	36	1	55278140	55278141	+	In_Frame_Ins	INS	-	-	CTG			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	55278140	55278141	-	CTG	INS	PCSK9	NM_174936	human	genbank	54_36p	+1	reviewed	in_frame_ins	c.42_43	p.18in_frame_insL	0.717:0.747	NULL	superfamily_Protease propeptides/inhibitors,HMMPfam_Inhibitor_I9,superfamily_Subtilisin-like,HMMPfam_Peptidase_S8	-	no_errors
CENPN	55839	genome.wustl.edu	36	16	79613724	79613724	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	79613724	79613724	C	T	SNP	CENPN	NM_001100625	human	genbank	54_36p	+1	validated	missense	c.553	p.H185Y	0.998	HMMPfam_CHL4	HMMPfam_CHL4	-	no_errors
NID2	22795	genome.wustl.edu	36	14	51590184	51590184	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	51590184	51590184	G	A	SNP	NID2	NM_007361	human	genbank	54_36p	-1	validated	missense	c.1292	p.S431L	0.063	NULL	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-	no_errors
OXA1L	5018	genome.wustl.edu	36	14	22306396	22306396	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	22306396	22306396	T	G	SNP	OXA1L	NM_005015	human	genbank	54_36p	+1	validated	missense	c.343	p.F115V	0.001	NULL	HMMPfam_60KD_IMP	-	no_errors
TUBA3C	7278	genome.wustl.edu	36	13	18649388	18649388	+	Silent	SNP	G	G	A			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	18649388	18649388	G	A	SNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	silent	c.735	p.D245	0.999	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
USP7	7874	genome.wustl.edu	36	16	8899999	8899999	+	Splice_Site	SNP	T	T	A			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	8899999	8899999	T	A	SNP	USP7	NM_003470	human	genbank	54_36p	-1	validated	splice_site	c.2532-2	e24-2	1.000	-	-	-	no_errors
LOC651452	651452	genome.wustl.edu	36	20	23918146	23918146	+	RNA	SNP	G	G	A			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	23918146	23918146	G	A	SNP	LOC651452	XR_038038	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
SH3BP1	23616	genome.wustl.edu	36	22	36374287	36374287	+	Silent	SNP	C	C	T			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	36374287	36374287	C	T	SNP	SH3BP1	NM_018957	human	genbank	54_36p	+1	validated	silent	c.1215	p.F405	1.000	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	HMMSmart_SM00721,HMMPfam_BAR,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
SPATA21	374955	genome.wustl.edu	36	1	16608932	16608932	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16608932	16608932	G	A	SNP	SPATA21	NM_198546	human	genbank	54_36p	-1	provisional	missense	c.338	p.S113L	0.005	NULL	superfamily_SSF47473,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
KALRN	8997	genome.wustl.edu	36	3	125706478	125706478	+	Silent	SNP	C	C	T			TCGA-AB-2867-03B-01W-0728-08	TCGA-AB-2867-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	125706478	125706478	C	T	SNP	KALRN	ENST00000393496	human	ensembl	54_36p	+1	known	silent	c.39	p.N13	1.000	superfamily_SH3	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_SH3_2	-	no_errors
