Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
PHACTR1	221692	genome.wustl.edu	36	6	13314308	13314308	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	13314308	13314308	T	G	SNP	PHACTR1	NM_030948	human	genbank	54_36p	+1	validated	missense	c.947	p.L316R	1.000	NULL	HMMPfam_RPEL,HMMSmart_SM00707	-	no_errors
ARRB1	408	genome.wustl.edu	36	11	74656375	74656375	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	74656375	74656375	C	T	SNP	ARRB1	NM_004041	human	genbank	54_36p	-1	validated	missense	c.1114	p.V372I	0.981	superfamily_E set domains	superfamily_E set domains,HMMPfam_Arrestin_N,PatternScan_ARRESTINS,HMMPfam_Arrestin_C	-	no_errors
MCART2	147407	genome.wustl.edu	36	18	27593841	27593841	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	27593841	27593841	C	T	SNP	MCART2	NM_001034172	human	genbank	54_36p	-1	validated	missense	c.782	p.R261Q	1.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
GRAMD4	23151	genome.wustl.edu	36	22	45447516	45447516	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	45447516	45447516	C	A	SNP	GRAMD4	NM_015124	human	genbank	54_36p	+1	validated	missense	c.1197	p.D399E	1.000	NULL	HMMPfam_GRAM,HMMSmart_SM00568	-	no_errors
LZTS1	11178	genome.wustl.edu	36	8	20155148	20155148	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	20155148	20155148	G	C	SNP	LZTS1	NM_021020	human	genbank	54_36p	-1	validated	missense	c.574	p.Q192E	1.000	NULL	HMMPfam_Fez1	-	no_errors
RFC4	5984	genome.wustl.edu	36	3	187990622	187990623	+	Splice_Site	INS	-	-	A			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	187990622	187990623	-	A	INS	RFC4	NM_002916	human	genbank	54_36p	-1	reviewed	splice_site_ins	c.996+2_996+1	e9+2	1.000:1.000	-	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519280	7519280	+	Splice_Site	SNP	C	C	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7519280	7519280	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.376-1	e4-1	1.000	-	-	-	no_errors
SLC4A7	9497	genome.wustl.edu	36	3	27402429	27402429	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	27402429	27402429	A	T	SNP	SLC4A7	NM_003615	human	genbank	54_36p	-1	validated	missense	c.3423	p.S1141R	1.000	NULL	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp	-	no_errors
RFX4	5992	genome.wustl.edu	36	12	105599943	105599943	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	105599943	105599943	G	A	SNP	RFX4	NM_213594	human	genbank	54_36p	+1	reviewed	missense	c.358	p.G120R	1.000	HMMPfam_RFX_DNA_binding,superfamily_SSF46785	HMMPfam_RFX_DNA_binding,superfamily_SSF46785	-	no_errors
DEAF1	10522	genome.wustl.edu	36	11	678051	678051	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	678051	678051	T	C	SNP	DEAF1	NM_021008	human	genbank	54_36p	-1	validated	missense	c.524	p.Q175R	1.000	NULL	superfamily_SAND domain-like,HMMPfam_SAND,HMMSmart_SM00258,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors
LOC729217	729217	genome.wustl.edu	36	16	62852158	62852158	+	RNA	SNP	G	G	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	62852158	62852158	G	T	SNP	LOC729217	XR_015483	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SUN1	23353	genome.wustl.edu	36	7	844959	844959	+	Splice_Site	SNP	A	A	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	844959	844959	A	T	SNP	UNC84A	NM_025154	human	genbank	54_36p	+1	reviewed	splice_site	c.1-2	e1-2	0.979	-	-	-	no_errors
PLEKHG2	64857	genome.wustl.edu	36	19	44605603	44605603	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	44605603	44605603	C	T	SNP	PLEKHG2	NM_022835	human	genbank	54_36p	+1	validated	missense	c.1943	p.S648F	0.098	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
LRBA	987	genome.wustl.edu	36	4	152040803	152040803	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	152040803	152040803	T	C	SNP	LRBA	NM_006726	human	genbank	54_36p	-1	validated	missense	c.1772	p.Y591C	1.000	superfamily_ARM repeat	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
C1RL	51279	genome.wustl.edu	36	12	7140607	7140607	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	7140607	7140607	C	T	SNP	C1RL	NM_016546	human	genbank	54_36p	-1	provisional	missense	c.986	p.R329H	0.357	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,HMMPfam_CUB,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_SER	-	no_errors
STK33	65975	genome.wustl.edu	36	11	8431029	8431029	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	8431029	8431029	C	A	SNP	STK33	NM_030906	human	genbank	54_36p	-1	validated	missense	c.787	p.V263L	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
FLJ43860	389690	genome.wustl.edu	36	8	142555396	142555396	+	Silent	SNP	C	C	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	142555396	142555396	C	T	SNP	FLJ43860	NM_207414	human	genbank	54_36p	-1	validated	silent	c.1479	p.K493	0.033	NULL	HMMPfam_HEAT,superfamily_ARM repeat	-	pseudogene
CATSPER4	378807	genome.wustl.edu	36	1	26397073	26397073	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	26397073	26397073	C	A	SNP	CATSPER4	NM_198137	human	genbank	54_36p	+1	validated	missense	c.596	p.P199H	0.993	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
ZNF783	100289678	genome.wustl.edu	36	7	148595232	148595232	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	148595232	148595232	G	A	SNP	ZNF783	ENST00000378052	human	ensembl	54_36p	+1	known	missense	c.659	p.R220K	0.002	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB	-	no_errors
SPEN	23013	genome.wustl.edu	36	1	16127271	16127271	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16127271	16127271	A	C	SNP	SPEN	NM_015001	human	genbank	54_36p	+1	reviewed	missense	c.1949	p.Y650S	1.000	NULL	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SPOC,superfamily_SPOC-like,superfamily_SSF54928	-	no_errors
PRKRIR	5612	genome.wustl.edu	36	11	75741455	75741455	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	75741455	75741455	A	T	SNP	PRKRIR	NM_004705	human	genbank	54_36p	-1	provisional	missense	c.387	p.H129Q	0.997	NULL	HMMPfam_THAP,HMMSmart_SM00692,HMMPfam_hATC	-	no_errors
ZC3H18	124245	genome.wustl.edu	36	16	87193847	87193847	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	87193847	87193847	A	G	SNP	ZC3H18	NM_144604	human	genbank	54_36p	+1	provisional	missense	c.1078	p.R360G	1.000	NULL	HMMPfam_zf-CCCH,HMMSmart_SM00356	-	no_errors
LOC392501	392501	genome.wustl.edu	36	X	91818303	91818303	+	RNA	SNP	C	C	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	91818303	91818303	C	T	SNP	LOC392501	XR_016267	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
PHF3	23469	genome.wustl.edu	36	6	64447858	64447858	+	Splice_Site	SNP	A	A	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	64447858	64447858	A	T	SNP	PHF3	NM_015153	human	genbank	54_36p	+1	provisional	splice_site	c.245-2	e2-2	0.998	-	-	-	no_errors
