Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
FLT3	2322	genome.wustl.edu	36	13	27506253	27506254	+	In_Frame_Ins	INS	-	-	GATCATATTCATATTCTCCAAACTCTAAATTTTCTCTTGGAAACTCCCATTTGA			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27506254	27506254	-	GATCATATTCATATTCTCCAAACTCTAAATTTTCTCTTGGAAACTCCCATTTGA	INS	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1802	p.602in_frame_insQMGVSKRKFRVWRI*I*S	1.000	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
LOC728843	728843	genome.wustl.edu	36	5	165388861	165388861	+	RNA	SNP	C	C	T			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	165388861	165388861	C	T	SNP	LOC728843	XR_015391	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.997	-	-	-	pseudogene
DRD5P1	1817	genome.wustl.edu	36	2	91237616	91237616	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	91237616	91237616	G	C	SNP	DRD5P1	ENST00000328341	human	ensembl	54_36p	-1	known	missense	c.21	p.N7K	0.249	NULL	HMMPfam_7tm_1,superfamily_SSF81321	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25322414	25322414	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25322414	25322414	G	A	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	nonsense	c.1453	p.Q485*	1.000	NULL	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
ENPEP	2028	genome.wustl.edu	36	4	111617157	111617157	+	Silent	SNP	C	C	T			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	111617157	111617157	C	T	SNP	ENPEP	NM_001977	human	genbank	54_36p	+1	validated	silent	c.138	p.S46	0.000	NULL	"superfamily_Leukotriene A4 hydrolase N-terminal domain,HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
RERE	473	genome.wustl.edu	36	1	8448659	8448659	+	Silent	SNP	G	G	A	rs77290458	byFrequency	TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	8448659	8448659	G	A	SNP	RERE	NM_001042681	human	genbank	54_36p	-1	reviewed	silent	c.1116	p.S372	0.989	NULL	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,HMMSmart_SM00401,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_GATA,HMMPfam_Atrophin-1	-	no_errors
NBPF14	25832	genome.wustl.edu	36	1	146488215	146488215	+	Silent	SNP	T	T	C			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	146488215	146488215	T	C	SNP	NBPF14	NM_015383	human	genbank	54_36p	-1	predicted	silent	c.603	p.G201	0.000	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_errors
SEMA6D	80031	genome.wustl.edu	36	15	45843351	45843351	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	45843351	45843351	C	T	SNP	SEMA6D	NM_153618	human	genbank	54_36p	+1	reviewed	missense	c.760	p.R254C	1.000	superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema	superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema,superfamily_Plexin repeat,HMMPfam_PSI,HMMSmart_SM00423	-	no_errors
PAX3	5077	genome.wustl.edu	36	2	222794334	222794334	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	222794334	222794334	C	T	SNP	PAX3	NM_181459	human	genbank	54_36p	-1	reviewed	missense	c.809	p.R270H	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like,PatternScan_PAIRED_1,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
CDH23	64072	genome.wustl.edu	36	10	73131787	73131787	+	Silent	SNP	G	G	T			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	73131787	73131787	G	T	SNP	CDH23	NM_022124	human	genbank	54_36p	+1	reviewed	silent	c.2400	p.V800	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors
LOC647211	647211	genome.wustl.edu	36	16	33312184	33312185	+	RNA	INS	-	-	AGG			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	33312184	33312185	-	AGG	INS	LOC647211	XR_017499	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
MAGEA11	4110	genome.wustl.edu	36	X	148578214	148578214	+	Silent	SNP	T	T	C			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	148578214	148578214	T	C	SNP	MAGEA11	NM_005366	human	genbank	54_36p	-1	reviewed	silent	c.147	p.P49	0.002	NULL	HMMPfam_MAGE	-	no_errors
NFKBIZ	64332	genome.wustl.edu	36	3	103058719	103058720	+	Splice_Site	INS	-	-	ACTTTTAGAAAGCTTTAATAACC			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	103058719	103058720	-	ACTTTTAGAAAGCTTTAATAACC	INS	NFKBIZ	NM_031419	human	genbank	54_36p	+1	reviewed	splice_site_ins	c.1935+2_1935+1	e10+2	0.997:0.000	-	-	-	no_errors
LOC642943	642943	genome.wustl.edu	36	9	94687368	94687368	+	RNA	SNP	A	A	G			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	94687368	94687368	A	G	SNP	LOC642943	XR_039168	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.127	-	-	-	pseudogene
SOX6	55553	genome.wustl.edu	36	11	16089994	16089994	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	16089994	16089994	G	A	SNP	SOX6	NM_033326	human	genbank	54_36p	-1	reviewed	missense	c.829	p.R277W	1.000	NULL	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors
ABCA4	24	genome.wustl.edu	36	1	94263182	94263182	+	Missense_Mutation	SNP	C	C	T	rs1800550	byCluster	TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	94263182	94263182	C	T	SNP	ABCA4	NM_000350	human	genbank	54_36p	-1	reviewed	missense	c.4550	p.R1517H	0.994	NULL	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
FLJ20674	0	genome.wustl.edu	36	12	116990711	116990716	+	In_Frame_Del	DEL	TCCTCC	TCCTCC	-			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	TCCTCC	TCCTCC			TCCTCC	TCCTCC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	116990711	116990716	TCCTCC	-	DEL	FLJ20674	NM_019086	human	genbank	54_36p	-1	validated	in_frame_del	c.1421_1416	p.EE473in_frame_del	0.673:0.714:0.728:0.818:0.812:0.827	NULL	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig	-	no_errors
LOC401131	401131	genome.wustl.edu	36	1	142051538	142051538	+	RNA	SNP	C	C	G	rs76410286	byCluster;byFrequency;by1000genomes	TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	142051538	142051538	C	G	SNP	LOC401131	XR_017704	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.306	-	-	-	no_errors
LOC100132793	100132793	genome.wustl.edu	36	7	5003498	5003498	+	RNA	SNP	G	G	A			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	5003498	5003498	G	A	SNP	LOC100132793	XR_038591	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
PRUNE2	158471	genome.wustl.edu	36	9	78513955	78513956	+	In_Frame_Ins	INS	-	-	TGACTGTTGCAG			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	78513955	78513956	-	TGACTGTTGCAG	INS	PRUNE2	ENST00000376718	human	ensembl	54_36p	-1	known	in_frame_ins	c.1978_1977	p.659in_frame_insLQQS	0.000:0.000	NULL	HMMSmart_SM00516,superfamily_CRAL/TRIO domain,superfamily_Ferritin-like	-	no_errors
ZNF626	199777	genome.wustl.edu	36	19	20599017	20599018	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	20599017	20599018	-	A	INS	ZNF626	NM_001076675	human	genbank	54_36p	-1	validated	frame_shift_ins	c.1506_1505	p.I503fs	0.835:0.747	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LOC645422	645422	genome.wustl.edu	36	12	67307311	67307315	+	Frame_Shift_Del	DEL	ATACA	ATACA	-			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	ATACA	ATACA			ATACA	ATACA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	67307311	67307315	ATACA	-	DEL	LOC645422	XM_928462	human	genbank	54_36p	-1	model	frame_shift_del	c.2_1	p.M1fs	0.995:0.995	NULL	HMMPfam_Ribosomal_L16,superfamily_Ribosomal protein L10e	-	pseudogene
NOS2	4843	genome.wustl.edu	36	17	23133246	23133246	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	23133246	23133246	C	T	SNP	NOS2	NM_000625	human	genbank	54_36p	-1	reviewed	missense	c.644	p.R215H	1.000	superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_NO_synthase	superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	-	no_errors
MANEA	79694	genome.wustl.edu	36	6	96141602	96141603	+	In_Frame_Ins	INS	-	-	TATATG			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	96141602	96141603	-	TATATG	INS	MANEA	ENST00000369293	human	ensembl	54_36p	+1	known	in_frame_ins	c.566_567	p.190in_frame_insIC	0.000:0.002	NULL	NULL	-	no_errors
LOC643454	643454	genome.wustl.edu	36	1	212722689	212722689	+	RNA	SNP	C	C	T			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	212722689	212722689	C	T	SNP	LOC643454	XR_042294	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.972	-	-	-	pseudogene
SPDYE5	442590	genome.wustl.edu	36	7	74966533	74966533	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	74966533	74966533	T	C	SNP	SPDYE5	ENST00000301990	human	ensembl	54_36p	+1	known	missense	c.592	p.F198L	0.023	NULL	NULL	-	no_errors
LOC149501	149501	genome.wustl.edu	36	1	155310081	155310082	+	RNA	INS	-	-	ACA			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	155310081	155310082	-	ACA	INS	LOC149501	XR_017100	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000:0.996	-	-	-	pseudogene
LOC100130447	100130447	genome.wustl.edu	36	2	203764021	203764024	+	Frame_Shift_Del	DEL	AGAA	AGAA	-			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	AGAA	AGAA			AGAA	AGAA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	203764021	203764024	AGAA	-	DEL	LOC100130447	XM_001724727	human	genbank	54_36p	+1	model	frame_shift_del	c.184_187	p.K63fs	1.000:1.000:1.000:1.000	HMMSmart_SM00649,superfamily_Ribosomal protein L11 C-terminal domain,HMMPfam_Ribosomal_L11	HMMPfam_Ribosomal_L11_N,HMMSmart_SM00649,superfamily_Ribosomal protein L11 C-terminal domain,HMMPfam_Ribosomal_L11,PatternScan_RIBOSOMAL_L11	-	pseudogene
MST1P9	11223	genome.wustl.edu	36	1	16957317	16957317	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16957317	16957317	G	-	DEL	MSTP9	ENST00000389184	human	ensembl	54_36p	-1	known	frame_shift_del	c.1480	p.R494fs	1.000	superfamily_Trypsin-like serine proteases,HMMPfam_Trypsin	HMMPfam_PAN_1,superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMPfam_Trypsin	-	no_stop_codon
LOC642738	642738	genome.wustl.edu	36	6	159867365	159867366	+	RNA	INS	-	-	TT			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	159867365	159867366	-	TT	INS	LOC642738	XR_017625	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
LOC100133326	100133326	genome.wustl.edu	36	3	197149042	197149042	+	RNA	SNP	T	T	C			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	197149042	197149042	T	C	SNP	LOC100133326	XR_037589	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC647415	647415	genome.wustl.edu	36	7	6931859	6931860	+	RNA	INS	-	-	GTG			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	6931859	6931860	-	GTG	INS	LOC647415	XR_037564	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
BRD7P2	647076	genome.wustl.edu	36	3	161302145	161302146	+	RNA	INS	-	-	AGAG			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	161302145	161302146	-	AGAG	INS	BRD7P2	XR_017374	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000:0.000	-	-	-	pseudogene
LOC728498	728498	genome.wustl.edu	36	15	28688165	28688165	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	28688165	28688165	T	C	SNP	LOC728498	XM_001724395	human	genbank	54_36p	+1	model	missense	c.505	p.C169R	0.870	NULL	NULL	-	no_errors
GPM6A	2823	genome.wustl.edu	36	4	176810076	176810076	+	Silent	SNP	G	G	A			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	176810076	176810076	G	A	SNP	GPM6A	NM_005277	human	genbank	54_36p	-1	validated	silent	c.444	p.T148	1.000	HMMPfam_Myelin_PLP	HMMPfam_Myelin_PLP,PatternScan_MYELIN_PLP_1,HMMSmart_SM00002,PatternScan_MYELIN_PLP_2	-	no_errors
MIR516B2	574485	genome.wustl.edu	36	19	58920554	58920555	+	RNA	INS	-	-	AAAGA			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	58920554	58920555	-	AAAGA	INS	MIRN516B2	ENST00000385190	human	ensembl	54_36p	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
LOC727860	727860	genome.wustl.edu	36	10	39005121	39005122	+	RNA	INS	-	-	A			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	39005121	39005122	-	A	INS	LOC727860	XR_037651	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
ENSG00000221243	0	genome.wustl.edu	36	6	3122657	3122657	+	RNA	SNP	A	A	T			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	3122657	3122657	A	T	SNP	ENSG00000221243	ENST00000408316	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
LOC647954	647954	genome.wustl.edu	36	5	122764567	122764568	+	RNA	INS	-	-	TCT			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	122764567	122764568	-	TCT	INS	LOC647954	XR_038441	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
FLJ30428	0	genome.wustl.edu	36	2	131777147	131777147	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	131777147	131777147	G	T	SNP	FLJ30428	XM_001723916	human	genbank	54_36p	+1	model	nonsense	c.154	p.G52*	0.999	NULL	NULL	-	no_errors
C5	727	genome.wustl.edu	36	9	122772344	122772344	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	122772344	122772344	T	G	SNP	C5	NM_001735	human	genbank	54_36p	-1	reviewed	missense	c.4087	p.T1363P	0.204	NULL	HMMPfam_ANATO,HMMSmart_ANATO,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terp_cyc_toroid,HMMPfam_A2M_recep,superfamily_AM_receptor_bind,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,superfamily_Anaphylatoxin,HMMPfam_NTR,HMMSmart_C345C,PatternScan_ALPHA_2_MACROGLOBULIN	-	no_errors
LOC653156	653156	genome.wustl.edu	36	4	128953323	128953324	+	In_Frame_Ins	INS	-	-	TAT			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	128953323	128953324	-	TAT	INS	LOC653156	XM_001133205	human	genbank	54_36p	-1	model	in_frame_ins	c.483_482	p.162in_frame_ins	0.918:1.000	NULL	HMMPfam_Ribosomal_L21e,superfamily_Translation proteins SH3-like domain,PatternScan_RIBOSOMAL_L21E	-	pseudogene
ATP10B	23120	genome.wustl.edu	36	5	159958378	159958378	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	159958378	159958378	A	G	SNP	ATP10B	NM_025153	human	genbank	54_36p	-1	validated	missense	c.3541	p.Y1181H	0.993	NULL	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Hydrolase_3	-	no_errors
LOC730861	730861	genome.wustl.edu	36	7	97365571	97365575	+	RNA	DEL	TGTTT	TGTTT	-			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	TGTTT	TGTTT			TGTTT	TGTTT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	97365571	97365575	TGTTT	-	DEL	LOC730861	XR_039352	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.014:0.023:0.141:0.160:0.164	-	-	-	pseudogene
LIMS1	3987	genome.wustl.edu	36	2	108659562	108659562	+	Silent	SNP	A	A	G			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	108659562	108659562	A	G	SNP	LIMS1	NM_004987	human	genbank	54_36p	+1	reviewed	silent	c.714	p.A238	0.154	HMMSmart_LIM,HMMPfam_LIM,superfamily_SSF57716	superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
LOC647211	647211	genome.wustl.edu	36	16	33312183	33312184	+	RNA	INS	-	-	TAG			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	33312183	33312184	-	TAG	INS	LOC647211	XR_017499	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
