Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ZNF783	100289678	genome.wustl.edu	36	7	148610203	148610203	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	148610203	148610203	C	A	SNP	ZNF783	NM_001004302	human	genbank	54_36p	+1	validated	missense	c.1477	p.P493T	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	rna_with_coding_region
KRTAP4-2	85291	genome.wustl.edu	36	17	36587840	36587840	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	36587840	36587840	A	T	SNP	KRTAP4-2	NM_033062	human	genbank	54_36p	-1	reviewed	missense	c.103	p.C35S	1.000	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LOC390748	390748	genome.wustl.edu	36	16	87458778	87458778	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	87458778	87458778	C	T	SNP	LOC390748	NM_001080487	human	genbank	54_36p	-1	inferred	missense	c.638	p.R213Q	0.998	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
OR10G7	390265	genome.wustl.edu	36	11	123414387	123414389	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	AGA	AGA			AGA	AGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	123414387	123414389	AGA	-	DEL	OR10G7	NM_001004463	human	genbank	54_36p	-1	provisional	in_frame_del	c.532_530	p.F177in_frame_del	1.000:0.988:0.951	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
CALR	811	genome.wustl.edu	36	19	12912080	12912081	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	12912080	12912081	-	A	INS	CALR	NM_004343	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.516_517	p.T172fs	1.000:1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Calreticulin	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Calreticulin,PatternScan_CALRETICULIN_1,PatternScan_CALRETICULIN_2,PatternScan_CALRETICULIN_REPEAT	-	no_errors
POLRMT	5442	genome.wustl.edu	36	19	580690	580690	+	Silent	SNP	C	C	T			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	580690	580690	C	T	SNP	POLRMT	NM_005035	human	genbank	54_36p	-1	reviewed	silent	c.672	p.Q224	0.559	NULL	superfamily_SSF56672,HMMPfam_RNA_pol,PatternScan_RNA_POL_PHAGE_1,PatternScan_RNA_POL_PHAGE_2	-	no_errors
EXOC5	10640	genome.wustl.edu	36	14	56776083	56776083	+	Silent	SNP	T	T	C			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	56776083	56776083	T	C	SNP	EXOC5	NM_006544	human	genbank	54_36p	-1	reviewed	silent	c.513	p.Q171	1.000	HMMPfam_Sec10	HMMPfam_Sec10	-	no_errors
EXD1	161829	genome.wustl.edu	36	15	39269594	39269594	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	39269594	39269594	G	A	SNP	EXD1	NM_152596	human	genbank	54_36p	-1	provisional	nonsense	c.715	p.R239*	0.496	superfamily_Ribonuclease H-like,HMMSmart_SM00474	superfamily_Ribonuclease H-like,HMMSmart_SM00474,HMMPfam_3_5_exonuc	-	no_errors
TCL1A	8115	genome.wustl.edu	36	14	95250107	95250107	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	95250107	95250107	C	T	SNP	TCL1A	NM_001098725	human	genbank	54_36p	-1	validated	missense	c.50	p.R17H	0.953	HMMPfam_TCL1_MTCP1,superfamily_TCL1_MTCP1	HMMPfam_TCL1_MTCP1,superfamily_TCL1_MTCP1	-	no_errors
PCDHB10	56126	genome.wustl.edu	36	5	140553903	140553903	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140553903	140553903	G	A	SNP	PCDHB10	NM_018930	human	genbank	54_36p	+1	reviewed	missense	c.1594	p.G532S	0.040	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA	-	no_errors
SPDEF	25803	genome.wustl.edu	36	6	34616830	34616830	+	Silent	SNP	C	C	T			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	34616830	34616830	C	T	SNP	SPDEF	NM_012391	human	genbank	54_36p	-1	provisional	silent	c.543	p.K181	1.000	HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SAM_homology	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SAM_homology,superfamily_SSF46785	-	no_errors
CTNNA3	29119	genome.wustl.edu	36	10	67710237	67710237	+	Silent	SNP	A	A	T			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	67710237	67710237	A	T	SNP	CTNNA3	NM_013266	human	genbank	54_36p	-1	validated	silent	c.1881	p.I627	1.000	HMMPfam_Vinculin	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
SLC4A2	6522	genome.wustl.edu	36	7	150399151	150399151	+	Silent	SNP	C	C	T			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	150399151	150399151	C	T	SNP	SLC4A2	NM_003040	human	genbank	54_36p	+1	validated	silent	c.1809	p.N603	0.998	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp,PatternScan_ANION_EXCHANGER_1,PatternScan_ANION_EXCHANGER_2	-	no_errors
SCAF8	22828	genome.wustl.edu	36	6	155195592	155195592	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	155195592	155195592	C	A	SNP	RBM16	NM_014892	human	genbank	54_36p	+1	validated	missense	c.3187	p.P1063T	1.000	NULL	superfamily_ENTH_VHS,HMMSmart_RPR,HMMPfam_DUF618,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179314300	179314300	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	179314300	179314300	C	T	SNP	TTN	ENST00000286104	human	ensembl	54_36p	-1	known	missense	c.11398	p.V3800I	0.951	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set	PatternScan_IG_MHC,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,PatternScan_FGGY_KINASES_1	-	no_stop_codon
TJAP1	93643	genome.wustl.edu	36	6	43574797	43574797	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	43574797	43574797	G	T	SNP	TJAP1	NM_080604	human	genbank	54_36p	+1	reviewed	missense	c.80	p.G27V	0.026	NULL	NULL	-	no_errors
ZMPSTE24	10269	genome.wustl.edu	36	1	40496552	40496552	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	40496552	40496552	G	A	SNP	ZMPSTE24	NM_005857	human	genbank	54_36p	+1	reviewed	missense	c.22	p.D8N	0.967	NULL	HMMPfam_Peptidase_M48	-	no_errors
LOC644315	644315	genome.wustl.edu	36	17	42154441	42154441	+	RNA	SNP	G	G	C			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	42154441	42154441	G	C	SNP	LOC644315	XR_017529	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.984	-	-	-	pseudogene
DCHS2	54798	genome.wustl.edu	36	4	155376048	155376048	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	155376048	155376048	G	A	SNP	DCHS2	NM_017639	human	genbank	54_36p	-1	validated	missense	c.7841	p.P2614L	0.038	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors
NMUR2	56923	genome.wustl.edu	36	5	151764450	151764450	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	151764450	151764450	C	T	SNP	NMUR2	NM_020167	human	genbank	54_36p	-1	reviewed	missense	c.418	p.V140I	0.391	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
TMEM63B	55362	genome.wustl.edu	36	6	44230149	44230149	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	44230149	44230149	C	A	SNP	TMEM63B	NM_018426	human	genbank	54_36p	+1	validated	missense	c.2296	p.P766T	1.000	NULL	HMMPfam_DUF221	-	no_errors
PCDH11X	27328	genome.wustl.edu	36	X	91019745	91019745	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	91019745	91019745	C	T	SNP	PCDH11X	NM_032968	human	genbank	54_36p	+1	reviewed	missense	c.1850	p.T617I	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Protocadherin	-	no_errors
PIDD	55367	genome.wustl.edu	36	11	792315	792315	+	Silent	SNP	G	G	A			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	792315	792315	G	A	SNP	LRDD	NM_145886	human	genbank	54_36p	-1	reviewed	silent	c.1056	p.T352	0.000	NULL	superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1,HMMPfam_Peptidase_S68,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors
MUC6	4588	genome.wustl.edu	36	11	1019541	1019541	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	1019541	1019541	C	T	SNP	MUC6	NM_005961	human	genbank	54_36p	-1	validated	missense	c.1090	p.A364T	0.000	HMMSmart_SM00215	HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,HMMSmart_SM00215,HMMPfam_C8,HMMPfam_TIL	-	no_errors
LOC401533	401533	genome.wustl.edu	36	9	83893235	83893235	+	RNA	SNP	C	C	T			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	83893235	83893235	C	T	SNP	LOC401533	XR_016904	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.975	-	-	-	pseudogene
DYRK4	8798	genome.wustl.edu	36	12	4576122	4576122	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2872-03A-01W-0732-08	TCGA-AB-2872-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	4576122	4576122	C	T	SNP	DYRK4	NM_003845	human	genbank	54_36p	+1	provisional	missense	c.526	p.R176C	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
