Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
MEX3C	51320	genome.wustl.edu	36	18	46956764	46956764	+	Silent	SNP	T	T	C			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	46956764	46956764	T	C	SNP	MEX3C	NM_016626	human	genbank	54_36p	-1	validated	silent	c.1935	p.P645	1.000	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	PatternScan_ZF_RING_1,HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors
EED	8726	genome.wustl.edu	36	11	85639095	85639095	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	85639095	85639095	C	A	SNP	EED	NM_003797	human	genbank	54_36p	+1	reviewed	nonsense	c.224	p.S75*	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
TDRD10	126668	genome.wustl.edu	36	1	152783137	152783137	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	152783137	152783137	G	A	SNP	TDRD10	NM_001098475	human	genbank	54_36p	+1	validated	missense	c.578	p.R193H	0.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT	-	no_errors
SMCHD1	23347	genome.wustl.edu	36	18	2753718	2753718	+	Silent	SNP	T	T	C			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	2753718	2753718	T	C	SNP	SMCHD1	NM_015295	human	genbank	54_36p	+1	validated	silent	c.4650	p.D1550	0.919	NULL	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,superfamily_Smc hinge domain,HMMPfam_SMC_hinge	-	no_errors
uc002bxn.1	0	genome.wustl.edu	36	15	100110306	100110309	+	Frame_Shift_Del	DEL	CTCA	CTCA	-			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	CTCA	CTCA			CTCA	CTCA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	100110306	100110309	CTCA	-	DEL	uc002bxn.1	ENST00000344371	human	ensembl	54_36p	+1	known	frame_shift_del	c.371_374	p.S124fs	0.998:0.997:0.996:0.993	NULL	NULL	-	no_stop_codon
MYF5	4617	genome.wustl.edu	36	12	79635034	79635034	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	79635034	79635034	A	G	SNP	MYF5	NM_005593	human	genbank	54_36p	+1	validated	missense	c.61	p.I21V	0.999	HMMPfam_Basic,HMMSmart_BASIC	HMMPfam_Basic,HMMSmart_BASIC,superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors
RPL29	6159	genome.wustl.edu	36	3	52003008	52003008	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	52003008	52003008	G	A	SNP	RPL29	NM_000992	human	genbank	54_36p	-1	reviewed	missense	c.277	p.L93F	0.729	NULL	HMMPfam_Ribosomal_L29e	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106376562	106376562	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	A	A			A	A	Verified	Valid	Somatic		Capture				Illumina GAIIx	4	106376562	106376562	A	0	DEL	TET2	NM_017628	human	genbank	54_36p	1	validated	frame_shift_del	c.2014	p.H672fs	0.11	NULL	NULL	(deletion:cds_exon[106374549,106378046])	NA
SCARA5	286133	genome.wustl.edu	36	8	27793118	27793118	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	27793118	27793118	C	T	SNP	SCARA5	NM_173833	human	genbank	54_36p	-1	provisional	missense	c.1238	p.R413H	1.000	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	HMMPfam_Collagen,superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	-	no_errors
DPP3	10072	genome.wustl.edu	36	11	66006376	66006376	+	Silent	SNP	C	C	T			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	66006376	66006376	C	T	SNP	DPP3	NM_005700	human	genbank	54_36p	+1	reviewed	silent	c.129	p.Y43	0.795	NULL	HMMPfam_Peptidase_M49	-	no_errors
PREX1	57580	genome.wustl.edu	36	20	46705237	46705237	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	46705237	46705237	C	A	SNP	PREX1	NM_020820	human	genbank	54_36p	-1	reviewed	missense	c.2207	p.R736I	1.000	superfamily_PDZ domain-like,HMMSmart_SM00228	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP,superfamily_PDZ domain-like,HMMSmart_SM00228"	-	no_errors
MYO3A	53904	genome.wustl.edu	36	10	26345791	26345791	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	26345791	26345791	G	A	SNP	MYO3A	NM_017433	human	genbank	54_36p	+1	reviewed	missense	c.545	p.R182Q	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106375989	106375989	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	106375989	106375989	C	T	SNP	TET2	NM_017628	human	genbank	54_36p	+1	validated	nonsense	c.1441	p.Q481*	1.000	NULL	NULL	-	no_errors
BRS3	680	genome.wustl.edu	36	X	135401946	135401946	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	135401946	135401946	C	T	SNP	BRS3	NM_001727	human	genbank	54_36p	+1	validated	missense	c.946	p.R316W	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
BPIFB2	80341	genome.wustl.edu	36	20	31065397	31065397	+	Silent	SNP	C	C	T			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	31065397	31065397	C	T	SNP	BPIL1	NM_025227	human	genbank	54_36p	+1	reviewed	silent	c.429	p.H143	0.000	superfamily_Bactericidal permeability-increasing protein BPI,HMMPfam_LBP_BPI_CETP	superfamily_Bactericidal permeability-increasing protein BPI,HMMPfam_LBP_BPI_CETP,HMMSmart_SM00329,HMMPfam_LBP_BPI_CETP_C	-	no_errors
