Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
DNAH8	1769	genome.wustl.edu	36	6	38933465	38933465	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	38933465	38933465	A	C	SNP	DNAH8	NM_001371	human	genbank	54_36p	+1	validated	missense	c.5276	p.H1759P	1.000	NULL	PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC647211	647211	genome.wustl.edu	36	16	33332506	33332506	+	RNA	SNP	T	T	C			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	33332506	33332506	T	C	SNP	LOC647211	XR_017499	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.993	-	-	-	pseudogene
RIT1	6016	genome.wustl.edu	36	1	154140885	154140885	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	154140885	154140885	C	T	SNP	RIT1	NM_006912	human	genbank	54_36p	-1	validated	missense	c.270	p.M90I	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519139	7519139	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7519139	7519139	A	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.516	p.V173fs	0.952	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
LOC642538	642538	genome.wustl.edu	36	10	81781886	81781886	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	81781886	81781886	G	A	SNP	LOC642538	XM_926027	human	genbank	54_36p	-1	model	missense	c.244	p.P82S	0.907	HMMPfam_Sas10_Utp3	HMMPfam_Sas10_Utp3	-	no_errors
ENSG00000211965	0	genome.wustl.edu	36	14	106084074	106084074	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	106084074	106084074	A	G	SNP	ENSG00000211965	ENST00000390625	human	ensembl	54_36p	-1	known	missense	c.266	p.F89S	0.002	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	-	no_stop_codon:bad_bp_length_for_coding_region
ENSG00000186223	0	genome.wustl.edu	36	11	4220168	4220168	+	Silent	SNP	G	G	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	4220168	4220168	G	A	SNP	ENSG00000186223	ENST00000334071	human	ensembl	54_36p	-1	known	silent	c.279	p.P93	0.966	HMMPfam_Ssu72	superfamily_Tyr_Pase_low_mol_wt,HMMPfam_Ssu72	-	no_errors
AP1G2	8906	genome.wustl.edu	36	14	23102500	23102500	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	23102500	23102500	C	A	SNP	AP1G2	NM_003917	human	genbank	54_36p	-1	reviewed	missense	c.1339	p.G447W	0.995	superfamily_ARM-type_fold,HMMPfam_Adaptin_N	superfamily_ARM-type_fold,HMMPfam_Adaptin_N,superfamily_Clath_adapt,HMMPfam_Alpha_adaptinC2,HMMSmart_Alpha_adaptinC2	-	no_errors
EFHB	151651	genome.wustl.edu	36	3	19905134	19905134	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	19905134	19905134	A	T	SNP	EFHB	NM_144715	human	genbank	54_36p	-1	validated	missense	c.1739	p.M580K	0.058	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
INTS5	80789	genome.wustl.edu	36	11	62173615	62173615	+	Silent	SNP	G	G	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	62173615	62173615	G	A	SNP	INTS5	NM_030628	human	genbank	54_36p	-1	provisional	silent	c.513	p.G171	0.998	NULL	NULL	-	no_errors
ASPRV1	151516	genome.wustl.edu	36	2	70042035	70042035	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	70042035	70042035	C	T	SNP	ASPRV1	NM_152792	human	genbank	54_36p	-1	validated	missense	c.290	p.R97Q	0.135	NULL	superfamily_Pept_Aspartic,PatternScan_ASP_PROTEASE	-	no_errors
LOC100134547	100134547	genome.wustl.edu	36	7	55460584	55460584	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	55460584	55460584	G	T	SNP	LOC100134547	XM_001726341	human	genbank	54_36p	-1	model	missense	c.145	p.R49S	0.819	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
RANGRF	29098	genome.wustl.edu	36	17	8133102	8133102	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	8133102	8133102	G	T	SNP	RANGRF	NM_016492	human	genbank	54_36p	+1	provisional	nonsense	c.181	p.E61*	0.621	superfamily_Mog1p/PsbP-like,HMMPfam_Mog1	superfamily_Mog1p/PsbP-like,HMMPfam_Mog1	-	no_errors
C9orf174	100499483	genome.wustl.edu	36	9	99116970	99116970	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	99116970	99116970	A	G	SNP	KIAA1529	NM_020893	human	genbank	54_36p	+1	predicted	missense	c.1265	p.K422R	0.997	NULL	NULL	-	no_errors
PRSS53	339105	genome.wustl.edu	36	16	31003500	31003500	+	Silent	SNP	G	G	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	31003500	31003500	G	A	SNP	POL3S	NM_001039503	human	genbank	54_36p	-1	validated	silent	c.1305	p.P435	0.870	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518931	7518931	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7518931	7518931	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.643	p.S215G	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
HERC2P2	400322	genome.wustl.edu	36	15	18902635	18902635	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	18902635	18902635	G	C	SNP	HERC2P2	ENST00000324413	human	ensembl	54_36p	-1	known	missense	c.2990	p.A997G	1.000	NULL	HMMPfam_MIB_HERC2	-	no_errors
OTOP1	133060	genome.wustl.edu	36	4	4241496	4241496	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	4241496	4241496	G	C	SNP	OTOP1	NM_177998	human	genbank	54_36p	-1	provisional	missense	c.1774	p.P592A	1.000	NULL	HMMPfam_DUF270	-	no_errors
FAM39B	375260	genome.wustl.edu	36	15	100332870	100332870	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	100332870	100332870	C	A	SNP	FAM39B	ENST00000354296	human	ensembl	54_36p	+1	known	missense	c.1174	p.Q392K	1.000	NULL	NULL	-	no_errors
CACNA1E	777	genome.wustl.edu	36	1	179994542	179994542	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	179994542	179994542	A	G	SNP	CACNA1E	NM_000721	human	genbank	54_36p	+1	reviewed	missense	c.4520	p.E1507G	1.000	superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
FBN1	2200	genome.wustl.edu	36	15	46576758	46576758	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	46576758	46576758	C	T	SNP	FBN1	NM_000138	human	genbank	54_36p	-1	reviewed	missense	c.2290	p.V764I	0.998	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181	HMMSmart_SM00181,HMMPfam_EGF,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_Concanavalin A-like lectins/glucanases,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Growth factor receptor domain	-	no_errors
SAC3D1	29901	genome.wustl.edu	36	11	64568476	64568476	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	64568476	64568476	C	T	SNP	SAC3D1	NM_013299	human	genbank	54_36p	+1	validated	missense	c.778	p.R260C	0.834	HMMPfam_SAC3_GANP	HMMPfam_SAC3_GANP	-	no_errors
FAM83A	84985	genome.wustl.edu	36	8	124290904	124290904	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	124290904	124290904	T	C	SNP	FAM83A	NM_207006	human	genbank	54_36p	+1	validated	missense	c.1091	p.L364P	0.083	NULL	HMMPfam_DUF1669,superfamily_SSF56024	-	no_errors
ZC3H3	23144	genome.wustl.edu	36	8	144691727	144691727	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	144691727	144691727	G	A	SNP	ZC3H3	NM_015117	human	genbank	54_36p	-1	validated	missense	c.953	p.S318L	0.000	NULL	superfamily_CCCH zinc finger,HMMPfam_zf-CCCH,HMMSmart_SM00356	-	no_errors
SERPINA9	327657	genome.wustl.edu	36	14	94003411	94003411	+	Silent	SNP	G	G	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	94003411	94003411	G	A	SNP	SERPINA9	NM_175739	human	genbank	54_36p	-1	validated	silent	c.744	p.G248	0.333	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN	-	no_errors
SPDYA	245711	genome.wustl.edu	36	2	28892400	28892400	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	28892400	28892400	A	C	SNP	SPDYA	NM_182756	human	genbank	54_36p	+1	validated	missense	c.16	p.M6L	1.000	NULL	NULL	-	no_errors
LOC649299	649299	genome.wustl.edu	36	19	21208157	21208157	+	Nonsense_Mutation	SNP	A	A	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	21208157	21208157	A	T	SNP	LOC649299	XM_001719759	human	genbank	54_36p	+1	model	nonsense	c.181	p.K61*	1.000	superfamily_Zn-binding ribosomal proteins,HMMPfam_Ribosomal_L44	superfamily_Zn-binding ribosomal proteins,HMMPfam_Ribosomal_L44	-	pseudogene
LOC646753	646753	genome.wustl.edu	36	9	30822123	30822123	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	30822123	30822123	T	-	DEL	LOC646753	XM_929703	human	genbank	54_36p	-1	model	frame_shift_del	c.101	p.K34fs	1.000	HMMPfam_Ribosomal_S26e	HMMPfam_Ribosomal_S26e,PatternScan_RIBOSOMAL_S26E	-	pseudogene
SYNPO2L	79933	genome.wustl.edu	36	10	75078233	75078233	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	75078233	75078233	G	A	SNP	SYNPO2L	NM_024875	human	genbank	54_36p	-1	validated	missense	c.511	p.R171C	0.995	NULL	NULL	-	no_errors
LOC100130108	100130108	genome.wustl.edu	36	19	22660046	22660046	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	22660046	22660046	A	G	SNP	LOC100130108	XM_001719785	human	genbank	54_36p	+1	model	missense	c.253	p.K85E	0.348	superfamily_C2H2 and C2HC zinc fingers	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	pseudogene
LOC100133163	100133163	genome.wustl.edu	36	22	17224942	17224942	+	Silent	SNP	C	C	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	17224942	17224942	C	T	SNP	LOC100133163	XM_001726385	human	genbank	54_36p	-1	model	silent	c.93	p.S31	0.979	superfamily_GTPase activation domain GAP,HMMPfam_RhoGAP,HMMSmart_SM00324	superfamily_GTPase activation domain GAP,HMMPfam_RhoGAP,HMMSmart_SM00324	-	pseudogene
CHD4	1108	genome.wustl.edu	36	12	6567325	6567325	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	6567325	6567325	G	A	SNP	CHD4	NM_001273	human	genbank	54_36p	-1	reviewed	missense	c.3517	p.R1173W	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_CHDNT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00298,superfamily_Chromo domain-like,PatternScan_CHROMO_1,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors
ACP5	54	genome.wustl.edu	36	19	11549103	11549103	+	Silent	SNP	C	C	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	11549103	11549103	C	A	SNP	ACP5	NM_001611	human	genbank	54_36p	-1	reviewed	silent	c.30	p.L10	0.250	NULL	superfamily_SSF56300,HMMPfam_Metallophos	-	no_errors
SH3GLB2	56904	genome.wustl.edu	36	9	130812220	130812220	+	Silent	SNP	G	G	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	130812220	130812220	G	A	SNP	SH3GLB2	NM_020145	human	genbank	54_36p	-1	provisional	silent	c.738	p.H246	0.993	HMMSmart_SM00721,HMMPfam_BAR	HMMSmart_SM00721,HMMPfam_BAR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
C5orf39	389289	genome.wustl.edu	36	5	43075375	43075375	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	43075375	43075375	G	T	SNP	C5orf39	NM_001014279	human	genbank	54_36p	-1	validated	missense	c.531	p.F177L	0.001	NULL	NULL	-	no_errors
RPL23AP7	118433	genome.wustl.edu	36	2	114086099	114086099	+	RNA	SNP	G	G	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	114086099	114086099	G	T	SNP	RPL23AP7	NR_000029	human	genbank	54_36p	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
EGFR	1956	genome.wustl.edu	36	7	55206394	55206394	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	55206394	55206394	C	T	SNP	EGFR	NM_005228	human	genbank	54_36p	+1	reviewed	missense	c.1913	p.T638M	0.000	NULL	superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,HMMSmart_SM00261,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
GPR113	165082	genome.wustl.edu	36	2	26390231	26390231	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	26390231	26390231	C	T	SNP	GPR113	NM_153835	human	genbank	54_36p	-1	validated	missense	c.580	p.V194I	0.002	NULL	HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
LENG9	94059	genome.wustl.edu	36	19	59665801	59665803	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	CCT	CCT			CCT	CCT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59665801	59665803	CCT	-	DEL	LENG9	NM_198988	human	genbank	54_36p	-1	validated	in_frame_del	c.721_719	p.E240in_frame_del	0.000:0.000:0.000	NULL	HMMPfam_zf-CCCH,superfamily_Cyc_nuc_Pdiester	-	no_errors
LOC727747	727747	genome.wustl.edu	36	2	111108281	111108281	+	RNA	SNP	A	A	G			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	111108281	111108281	A	G	SNP	LOC727747	XR_015114	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.999	-	-	-	pseudogene
CRTAC1	55118	genome.wustl.edu	36	10	99667317	99667317	+	Silent	SNP	G	G	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	99667317	99667317	G	A	SNP	CRTAC1	NM_018058	human	genbank	54_36p	-1	validated	silent	c.645	p.A215	1.000	superfamily_Integrin alpha N-terminal domain	superfamily_Integrin alpha N-terminal domain,HMMPfam_FG-GAP,HMMPfam_UnbV_ASPIC,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179	-	no_errors
SYT15	83849	genome.wustl.edu	36	10	46388671	46388671	+	Silent	SNP	G	G	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	46388671	46388671	G	A	SNP	SYT15	NM_031912	human	genbank	54_36p	-1	reviewed	silent	c.271	p.L91	0.005	NULL	PatternScan_CNMP_BINDING_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
LOC161527	161527	genome.wustl.edu	36	15	82700438	82700438	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	82700438	82700438	G	A	SNP	LOC161527	XM_929030	human	genbank	54_36p	+1	model	missense	c.1328	p.R443Q	0.979	NULL	NULL	-	no_errors
DPF3	8110	genome.wustl.edu	36	14	72149044	72149045	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	72149044	72149045	-	AA	INS	DPF3	ENST00000381216	human	ensembl	54_36p	-1	known	frame_shift_ins	c.554_553	p.S185fs	0.003:0.001	NULL	NULL	-	no_start_codon
STT3B	201595	genome.wustl.edu	36	3	31592957	31592957	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	31592957	31592957	A	G	SNP	STT3B	NM_178862	human	genbank	54_36p	+1	provisional	missense	c.380	p.D127G	1.000	HMMPfam_STT3	HMMPfam_STT3	-	no_errors
VPS72	6944	genome.wustl.edu	36	1	149424621	149424621	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	149424621	149424621	C	G	SNP	VPS72	NM_005997	human	genbank	54_36p	-1	provisional	missense	c.370	p.D124H	1.000	HMMPfam_YL1	HMMPfam_YL1,HMMPfam_YL1_C	-	no_errors
LRP1	4035	genome.wustl.edu	36	12	55863904	55863904	+	Silent	SNP	C	C	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	55863904	55863904	C	T	SNP	LRP1	NM_002332	human	genbank	54_36p	+1	validated	silent	c.5874	p.D1958	0.997	superfamily_YWTD domain,HMMPfam_Ldl_recept_b,HMMSmart_SM00135	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_1	-	no_errors
DENND1C	79958	genome.wustl.edu	36	19	6423930	6423930	+	Silent	SNP	C	C	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	6423930	6423930	C	A	SNP	DENND1C	NM_024898	human	genbank	54_36p	-1	validated	silent	c.1128	p.R376	0.001	HMMPfam_dDENN,HMMSmart_dDENN	HMMPfam_uDENN,HMMSmart_uDENN,HMMPfam_DENN,HMMSmart_DENN,HMMPfam_dDENN,HMMSmart_dDENN	-	no_errors
IGKC	3514	genome.wustl.edu	36	2	89090657	89090657	+	Silent	SNP	T	T	G			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	89090657	89090657	T	G	SNP	IGKC	ENST00000390249	human	ensembl	54_36p	-1	known	silent	c.288	p.T96	1.000	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	-	no_stop_codon:bad_bp_length_for_coding_region
HYDIN	54768	genome.wustl.edu	36	16	69572830	69572830	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	69572830	69572830	G	T	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.4472	p.P1491H	1.000	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CROCC	9696	genome.wustl.edu	36	1	17147924	17147924	+	Missense_Mutation	SNP	C	C	T	rs72285547		TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	17147924	17147924	C	T	SNP	CROCC	NM_014675	human	genbank	54_36p	+1	validated	missense	c.2752	p.R918W	1.000	NULL	superfamily_Prefoldin	-	no_errors
ACAN	176	genome.wustl.edu	36	15	87201110	87201110	+	Silent	SNP	T	T	C			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	87201110	87201110	T	C	SNP	ACAN	NM_013227	human	genbank	54_36p	+1	reviewed	silent	c.3948	p.S1316	0.000	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406,PatternScan_IG_MHC,HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like,PatternScan_LINK_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
AP3S1	1176	genome.wustl.edu	36	5	115230317	115230320	+	Frame_Shift_Del	DEL	AAGA	AAGA	-			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	AAGA	AAGA			AAGA	AAGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	115230317	115230320	AAGA	-	DEL	AP3S1	NM_001284	human	genbank	54_36p	+1	validated	frame_shift_del	c.121_124	p.K41fs	1.000:1.000:1.000:1.000	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like	HMMPfam_Clat_adaptor_s,PatternScan_CLAT_ADAPTOR_S,superfamily_SNARE-like	-	no_errors
GLT6D1	360203	genome.wustl.edu	36	9	137656168	137656168	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	137656168	137656168	A	-	DEL	GLT6D1	NM_182974	human	genbank	54_36p	-1	provisional	frame_shift_del	c.427	p.W143fs	0.926	HMMPfam_Glyco_transf_6,superfamily_SSF53448	HMMPfam_Glyco_transf_6,superfamily_SSF53448	-	no_errors
PTPN14	5784	genome.wustl.edu	36	1	212609569	212609569	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	212609569	212609569	G	A	SNP	PTPN14	NM_005401	human	genbank	54_36p	-1	reviewed	missense	c.3125	p.T1042M	1.000	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799	HMMPfam_Y_phosphatase,HMMSmart_PTPc,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_FERM_N,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF52799,superfamily_SSF54236	-	no_errors
HIP1R	9026	genome.wustl.edu	36	12	121904569	121904569	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	121904569	121904569	G	A	SNP	HIP1R	NM_003959	human	genbank	54_36p	+1	validated	missense	c.604	p.A202T	1.000	HMMPfam_ANTH	HMMPfam_ANTH,superfamily_ENTH_VHS,HMMSmart_ENTH,superfamily_SSF109885,HMMSmart_ILWEQ,HMMPfam_I_LWEQ	-	no_errors
EHBP1L1	254102	genome.wustl.edu	36	11	65116111	65116111	+	Silent	SNP	C	C	G			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	65116111	65116111	C	G	SNP	EHBP1L1	NM_001099409	human	genbank	54_36p	+1	validated	silent	c.4446	p.V1482	1.000	NULL	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH	-	no_errors
NR2E1	7101	genome.wustl.edu	36	6	108606021	108606021	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	108606021	108606021	G	A	SNP	NR2E1	NM_003269	human	genbank	54_36p	+1	validated	missense	c.525	p.M175I	1.000	superfamily_Nuclear receptor ligand-binding domain	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
C11orf31	280636	genome.wustl.edu	36	11	57266175	57266175	+	Silent	SNP	C	C	T			TCGA-AB-2878-03A-01W-0732-08	TCGA-AB-2878-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	57266175	57266175	C	T	SNP	C11orf31	NM_170746	human	genbank	54_36p	+1	reviewed	silent	c.279	p.L93	0.999	NULL	NULL	-	pseudogene
