Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
MXRA5	25878	genome.wustl.edu	36	X	3251845	3251845	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	3251845	3251845	A	C	SNP	MXRA5	NM_015419	human	genbank	54_36p	-1	validated	missense	c.1881	p.H627Q	0.006	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
ANK2	287	genome.wustl.edu	36	4	114495214	114495214	+	Silent	SNP	C	C	T			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	114495214	114495214	C	T	SNP	ANK2	NM_001148	human	genbank	54_36p	+1	reviewed	silent	c.5991	p.F1997	1.000	NULL	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
EFEMP1	2202	genome.wustl.edu	36	2	56003032	56003032	+	Silent	SNP	C	C	T			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	56003032	56003032	C	T	SNP	EFEMP1	NM_001039348	human	genbank	54_36p	-1	reviewed	silent	c.48	p.K16	0.993	NULL	superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
MT-CO1	0	genome.wustl.edu	36	MT	6934	6934	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	6934	6934	T	C	SNP	MT-CO1	ENST00000361624	human	ensembl	54_36p	+1	known	missense	c.1030	p.F344L	NULL	HMMPfam_COX1,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	no_stop_codon
KRT8	3856	genome.wustl.edu	36	12	51584966	51584966	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	51584966	51584966	G	A	SNP	KRT8	NM_002273	human	genbank	54_36p	-1	reviewed	missense	c.67	p.R23C	0.997	NULL	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
OR5H6	79295	genome.wustl.edu	36	3	99466292	99466292	+	Silent	SNP	T	T	C			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	99466292	99466292	T	C	SNP	OR5H6	NM_001005479	human	genbank	54_36p	+1	provisional	silent	c.474	p.I158	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR5K1	26339	genome.wustl.edu	36	3	99671353	99671353	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	99671353	99671353	G	A	SNP	OR5K1	NM_001004736	human	genbank	54_36p	+1	provisional	missense	c.243	p.M81I	0.010	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
APBA2	321	genome.wustl.edu	36	15	27186269	27186269	+	Silent	SNP	C	C	A			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	27186269	27186269	C	A	SNP	APBA2	NM_005503	human	genbank	54_36p	+1	reviewed	silent	c.1872	p.T624	1.000	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729	-	no_errors
LOC392188	392188	genome.wustl.edu	36	8	7868111	7868111	+	Silent	SNP	T	T	G			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	7868111	7868111	T	G	SNP	LOC392188	XM_001720762	human	genbank	54_36p	-1	model	silent	c.75	p.P25	0.001	NULL	PatternScan_UCH_2_2,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1	-	no_errors
ENSG00000168992	0	genome.wustl.edu	36	2	95576232	95576232	+	Silent	SNP	C	C	T			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	95576232	95576232	C	T	SNP	ENSG00000168992	ENST00000306515	human	ensembl	54_36p	+1	known	silent	c.177	p.T59	0.994	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,superfamily_SSF81321	-	no_errors
ALDH3B2	222	genome.wustl.edu	36	11	67189375	67189375	+	Silent	SNP	G	G	A			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	67189375	67189375	G	A	SNP	ALDH3B2	NM_000695	human	genbank	54_36p	-1	reviewed	silent	c.663	p.R221	0.000	HMMPfam_Aldedh,superfamily_ALDH-like	HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_ALDH-like	-	no_errors
ATRNL1	26033	genome.wustl.edu	36	10	117476782	117476782	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	117476782	117476782	G	A	SNP	ATRNL1	NM_207303	human	genbank	54_36p	+1	validated	missense	c.3830	p.R1277H	1.000	NULL	superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,HMMPfam_EGF_2,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,superfamily_Plexin repeat,HMMSmart_SM00423,HMMPfam_PSI,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1	-	no_errors
SALL1	6299	genome.wustl.edu	36	16	49731960	49731960	+	Silent	SNP	C	C	T			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	49731960	49731960	C	T	SNP	SALL1	NM_002968	human	genbank	54_36p	-1	reviewed	silent	c.1674	p.P558	0.897	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PCSK5	5125	genome.wustl.edu	36	9	78127861	78127861	+	Silent	SNP	G	G	T			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	78127861	78127861	G	T	SNP	PCSK5	ENST00000376754	human	ensembl	54_36p	+1	known	silent	c.3285	p.S1095	0.000	superfamily_Growth factor receptor domain,HMMSmart_SM00261	superfamily_Subtilisin-like,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_SER,superfamily_Galactose-binding domain-like,HMMPfam_P_proprotein,HMMSmart_SM00261,superfamily_Growth factor receptor domain,HMMSmart_SM00181	-	no_errors
