Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
BSN	8927	genome.wustl.edu	36	3	49676911	49676911	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	49676911	49676911	A	G	SNP	BSN	NM_003458	human	genbank	54_36p	+1	validated	missense	c.11660	p.Q3887R	1.000	NULL	HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF	-	no_errors
LLGL2	3993	genome.wustl.edu	36	17	71081193	71081194	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	TC	TC			TC	TC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	71081193	71081194	TC	-	DEL	LLGL2	NM_001031803	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.2762_2763	p.S924fs	1.000:1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
C11orf70	85016	genome.wustl.edu	36	11	101459121	101459121	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	101459121	101459121	G	A	SNP	C11orf70	NM_032930	human	genbank	54_36p	+1	predicted	missense	c.671	p.G224D	1.000	NULL	NULL	-	no_errors
FANCC	2176	genome.wustl.edu	36	9	97051267	97051267	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	97051267	97051267	T	C	SNP	FANCC	NM_000136	human	genbank	54_36p	-1	reviewed	missense	c.128	p.E43G	0.998	HMMPfam_Fanconi_C	HMMPfam_Fanconi_C	-	no_errors
MAP6	4135	genome.wustl.edu	36	11	74994526	74994526	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	74994526	74994526	T	A	SNP	MAP6	NM_033063	human	genbank	54_36p	-1	reviewed	missense	c.1291	p.N431Y	1.000	HMMPfam_STOP	HMMPfam_STOP	-	no_errors
GABRB1	2560	genome.wustl.edu	36	4	47100206	47100206	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	47100206	47100206	C	T	SNP	GABRB1	NM_000812	human	genbank	54_36p	+1	reviewed	missense	c.659	p.S220F	1.000	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors
LYZL4	131375	genome.wustl.edu	36	3	42413829	42413829	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	42413829	42413829	G	T	SNP	LYZL4	NM_144634	human	genbank	54_36p	-1	provisional	missense	c.373	p.P125T	0.767	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955,PatternScan_LACTALBUMIN_LYSOZYME_1	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25316811	25316811	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25316811	25316811	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2186	p.R729Q	1.000	HMMPfam_DNA_methylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
PCDHGB8P	56120	genome.wustl.edu	36	5	140787607	140787607	+	RNA	SNP	C	C	T			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140787607	140787607	C	T	SNP	PCDHGB8P	NR_001297	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.254	-	-	-	pseudogene
CLPX	10845	genome.wustl.edu	36	15	63243500	63243500	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	63243500	63243500	T	C	SNP	CLPX	NM_006660	human	genbank	54_36p	-1	provisional	missense	c.593	p.Y198C	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_2,HMMSmart_SM00382,HMMPfam_ClpB_D2-small	-	no_errors
FAM43A	131583	genome.wustl.edu	36	3	195889781	195889781	+	Silent	SNP	T	T	C			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	195889781	195889781	T	C	SNP	FAM43A	NM_153690	human	genbank	54_36p	+1	validated	silent	c.937	p.L313	1.000	NULL	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID	-	no_errors
IDH2	3418	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	88432938	88432938	C	T	SNP	IDH2	NM_002168	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
PDCD2L	84306	genome.wustl.edu	36	19	39592210	39592210	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	39592210	39592210	A	G	SNP	PDCD2L	NM_032346	human	genbank	54_36p	+1	provisional	missense	c.641	p.Y214C	0.998	HMMPfam_PDCD2_C	HMMPfam_PDCD2_C	-	no_errors
EPHA10	284656	genome.wustl.edu	36	1	37959089	37959089	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	37959089	37959089	T	C	SNP	EPHA10	NM_001099439	human	genbank	54_36p	-1	validated	missense	c.2161	p.I721V	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
CCL21	6366	genome.wustl.edu	36	9	34700059	34700059	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	34700059	34700059	G	A	SNP	CCL21	NM_002989	human	genbank	54_36p	-1	reviewed	missense	c.5	p.A2V	0.983	NULL	HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines	-	no_errors
AK8	158067	genome.wustl.edu	36	9	134688504	134688504	+	Silent	SNP	C	C	T			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	134688504	134688504	C	T	SNP	C9orf98	NM_152572	human	genbank	54_36p	-1	validated	silent	c.798	p.P266	0.982	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_ADK,superfamily_Microbial and mitochondrial ADK insert ""zinc finger"" domain,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ETV6	2120	genome.wustl.edu	36	12	11930226	11930226	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	11930226	11930226	A	G	SNP	ETV6	NM_001987	human	genbank	54_36p	+1	reviewed	missense	c.1252	p.R418G	1.000	"HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_2,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25320526	25320526	+	Splice_Site	SNP	A	A	G			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25320526	25320526	A	G	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	splice_site	c.1851+2	e14+2	1.000	-	-	-	no_errors
GPRIN2	9721	genome.wustl.edu	36	10	46419136	46419136	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	46419136	46419136	C	T	SNP	GPRIN2	NM_014696	human	genbank	54_36p	+1	validated	missense	c.250	p.P84S	0.000	NULL	NULL	-	no_errors
CDC14B	8555	genome.wustl.edu	36	9	98421391	98421391	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	98421391	98421391	T	A	SNP	CDC14B	NM_033331	human	genbank	54_36p	-1	reviewed	missense	c.91	p.I31F	1.000	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00195,HMMSmart_SM00404,HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
GPR179	440435	genome.wustl.edu	36	17	33740083	33740083	+	Silent	SNP	C	C	T			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	33740083	33740083	C	T	SNP	GPR179	NM_001004334	human	genbank	54_36p	-1	validated	silent	c.2895	p.L965	0.076	NULL	HMMSmart_EGF,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
DIP2C	22982	genome.wustl.edu	36	10	384632	384632	+	Silent	SNP	C	C	T			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	384632	384632	C	T	SNP	DIP2C	NM_014974	human	genbank	54_36p	-1	reviewed	silent	c.3180	p.P1060	0.977	superfamily_SSF56801,HMMPfam_AMP-binding	PatternScan_AMP_BINDING,HMMPfam_DMAP_binding,superfamily_SSF56801,HMMPfam_AMP-binding	-	no_errors
CUL9	23113	genome.wustl.edu	36	6	43274427	43274427	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	43274427	43274427	G	A	SNP	CUL9	NM_015089	human	genbank	54_36p	+1	validated	missense	c.2906	p.R969H	0.201	superfamily_ARM repeat	"HMMPfam_Cullin,HMMPfam_IBR,HMMSmart_SM00647,HMMPfam_APC10,superfamily_Galactose-binding domain-like,superfamily_ARM repeat,PatternScan_CULLIN_1,superfamily_Cullin homology domain,PatternScan_ZF_RING_1,PatternScan_CYTOCHROME_P450,superfamily_""Winged helix"" DNA-binding domain,superfamily_RING/U-box"	-	no_errors
OTOF	9381	genome.wustl.edu	36	2	26537252	26537252	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	26537252	26537252	C	T	SNP	OTOF	NM_194248	human	genbank	54_36p	-1	reviewed	missense	c.5684	p.R1895H	0.997	NULL	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerB	-	no_errors
RIPPLY1	92129	genome.wustl.edu	36	X	106032037	106032037	+	Silent	SNP	G	G	A			TCGA-AB-2891-03A-01W-0733-08	TCGA-AB-2891-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	106032037	106032037	G	A	SNP	RIPPLY1	NM_138382	human	genbank	54_36p	-1	provisional	silent	c.220	p.L74	0.000	NULL	NULL	-	no_errors
