Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
PCDH1	5097	genome.wustl.edu	36	5	141224245	141224245	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	141224245	141224245	A	G	SNP	PCDH1	NM_032420	human	genbank	54_36p	-1	reviewed	missense	c.1835	p.F612S	1.000	superfamily_Cadherin	superfamily_Cadherin,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_GREAB_2,HMMPfam_Protocadherin	-	no_errors
KLHDC7A	127707	genome.wustl.edu	36	1	18682068	18682068	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	18682068	18682068	C	T	SNP	KLHDC7A	NM_152375	human	genbank	54_36p	+1	validated	missense	c.2006	p.T669M	1.000	superfamily_Gal_oxid_central	superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	-	no_errors
LOC90586	90586	genome.wustl.edu	36	17	38274388	38274388	+	RNA	SNP	G	G	A			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	38274388	38274388	G	A	SNP	LOC90586	NR_002773	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.961	-	-	-	pseudogene
MYBBP1A	10514	genome.wustl.edu	36	17	4400355	4400355	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	4400355	4400355	C	T	SNP	MYBBP1A	NM_001105538	human	genbank	54_36p	-1	validated	missense	c.1066	p.V356M	0.191	superfamily_ARM-type_fold,HMMPfam_DNA_pol_phi	superfamily_ARM-type_fold,HMMPfam_DNA_pol_phi	-	no_errors
SCTR	6344	genome.wustl.edu	36	2	119920929	119920929	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	119920929	119920929	C	T	SNP	SCTR	NM_002980	human	genbank	54_36p	-1	reviewed	missense	c.1016	p.R339H	0.995	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_2,HMMPfam_HRM,HMMSmart_SM00008,PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Family A G protein-coupled receptor-like	-	no_errors
SCRT2	85508	genome.wustl.edu	36	20	592581	592581	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	592581	592581	C	G	SNP	SCRT2	NM_033129	human	genbank	54_36p	-1	validated	missense	c.658	p.A220P	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors
SPTB	6710	genome.wustl.edu	36	14	64307466	64307466	+	Silent	SNP	C	C	A			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	64307466	64307466	C	A	SNP	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	silent	c.5688	p.R1896	1.000	HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
GREB1	9687	genome.wustl.edu	36	2	11658497	11658497	+	Silent	SNP	C	C	T			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	11658497	11658497	C	T	SNP	GREB1	NM_014668	human	genbank	54_36p	+1	reviewed	silent	c.2454	p.F818	1.000	NULL	NULL	-	no_errors
ADAMTS7	11173	genome.wustl.edu	36	15	76845152	76845152	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	76845152	76845152	G	C	SNP	ADAMTS7	NM_014272	human	genbank	54_36p	-1	reviewed	missense	c.4156	p.H1386D	0.001	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
LRP5	4041	genome.wustl.edu	36	11	67871993	67871993	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	67871993	67871993	C	T	SNP	LRP5	NM_002335	human	genbank	54_36p	+1	validated	missense	c.194	p.A65V	1.000	superfamily_YWTD domain,HMMSmart_SM00135	superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1	-	no_errors
HADH	3033	genome.wustl.edu	36	4	109168302	109168302	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	109168302	109168302	G	T	SNP	HADH	NM_005327	human	genbank	54_36p	+1	reviewed	missense	c.646	p.G216W	1.000	PatternScan_3HCDH,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,HMMPfam_3HCDH	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_3HCDH_N,PatternScan_3HCDH,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,HMMPfam_3HCDH	-	no_errors
SMC1A	8243	genome.wustl.edu	36	X	53440262	53440262	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	53440262	53440262	C	A	SNP	SMC1A	NM_006306	human	genbank	54_36p	-1	reviewed	nonsense	c.2563	p.E855*	1.000	HMMPfam_SMC_N,superfamily_SSF52540	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	CGCG			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	CGCG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
GRIK2	2898	genome.wustl.edu	36	6	102176522	102176522	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	102176522	102176522	A	G	SNP	GRIK2	NM_021956	human	genbank	54_36p	+1	reviewed	missense	c.121	p.I41V	1.000	superfamily_Periplasmic binding protein-like I	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
IKZF4	64375	genome.wustl.edu	36	12	54705149	54705149	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	54705149	54705149	G	A	SNP	IKZF4	NM_022465	human	genbank	54_36p	+1	validated	missense	c.226	p.V76M	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
EPGN	255324	genome.wustl.edu	36	4	75393698	75393698	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	75393698	75393698	C	A	SNP	EPGN	NM_001013442	human	genbank	54_36p	+1	provisional	missense	c.68	p.A23E	0.236	NULL	HMMSmart_EGF,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
ANKRD12	23253	genome.wustl.edu	36	18	9246666	9246666	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	9246666	9246666	A	G	SNP	ANKRD12	NM_015208	human	genbank	54_36p	+1	validated	missense	c.3401	p.K1134R	0.977	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27490642	27490642	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27490642	27490642	C	A	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.2503	p.D835Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
NOTCH2	4853	genome.wustl.edu	36	1	120266502	120266502	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	120266502	120266502	A	T	SNP	NOTCH2	NM_024408	human	genbank	54_36p	-1	reviewed	missense	c.5093	p.I1698N	1.000	NULL	superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_NL,HMMPfam_Notch,superfamily_Notch_region,HMMPfam_NOD,HMMPfam_NODP,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
ANKRD55	79722	genome.wustl.edu	36	5	55491450	55491450	+	Silent	SNP	C	C	T			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	55491450	55491450	C	T	SNP	ANKRD55	NM_024669	human	genbank	54_36p	-1	validated	silent	c.450	p.S150	0.807	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
CEBPA	1050	genome.wustl.edu	36	19	38484304	38484305	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	38484304	38484305	-	G	INS	CEBPA	NM_004364	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.857_856	p.R286fs	1.000:1.000	HMMSmart_BRLZ,HMMPfam_bZIP_2	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors
SPEN	23013	genome.wustl.edu	36	1	16075676	16075676	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16075676	16075676	C	G	SNP	SPEN	NM_015001	human	genbank	54_36p	+1	reviewed	missense	c.797	p.T266R	0.920	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC	-	no_errors
ZNF462	58499	genome.wustl.edu	36	9	108730667	108730667	+	Silent	SNP	C	C	T			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	108730667	108730667	C	T	SNP	ZNF462	NM_021224	human	genbank	54_36p	+1	validated	silent	c.4653	p.D1551	1.000	superfamily_beta-sandwich domain of Sec23/24	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_beta-sandwich domain of Sec23/24	-	no_errors
GABRG2	2566	genome.wustl.edu	36	5	161508763	161508763	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	161508763	161508763	G	T	SNP	GABRG2	NM_198904	human	genbank	54_36p	+1	reviewed	missense	c.994	p.V332F	1.000	superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors
CECR2	27443	genome.wustl.edu	36	22	16370917	16370917	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	16370917	16370917	G	A	SNP	CECR2	ENST00000400585	human	ensembl	54_36p	+1	known	missense	c.877	p.V293I	0.987	NULL	superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
KCNT1	57582	genome.wustl.edu	36	9	137781841	137781841	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	137781841	137781841	T	A	SNP	KCNT1	NM_020822	human	genbank	54_36p	+1	provisional	missense	c.331	p.S111T	1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans_2,superfamily_NAD(P)-bd,HMMPfam_BK_channel_a	-	no_errors
MT-CYB	0	genome.wustl.edu	36	MT	14964	14964	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2900-03A-01W-0733-08	TCGA-AB-2900-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	14964	14964	G	A	SNP	MT-CYB	ENST00000361789	human	ensembl	54_36p	+1	known	missense	c.217	p.V73M	NULL	HMMPfam_Cytochrom_B_N,superfamily_Transmembr_di-haem_cytochrome	HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C,superfamily_Transmembr_di-haem_cytochrome	-	no_stop_codon:bad_bp_length_for_coding_region
