Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
C16orf57	79650	genome.wustl.edu	36	16	56608774	56608774	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2901-03A-01W-0733-08	TCGA-AB-2901-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	56608774	56608774	C	G	SNP	C16orf57	NM_024598	human	genbank	54_36p	+1	validated	missense	c.539	p.A180G	0.769	HMMPfam_HVSL	HMMPfam_HVSL	-	no_errors
LYRM5	144363	genome.wustl.edu	36	12	25248491	25248491	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2901-03A-01W-0733-08	TCGA-AB-2901-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	25248491	25248491	C	T	SNP	LYRM5	NM_001001660	human	genbank	54_36p	+1	validated	missense	c.251	p.S84L	0.130	NULL	HMMPfam_Complex1_LYR	-	no_errors
OR52E8	390079	genome.wustl.edu	36	11	5835331	5835331	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2901-03A-01W-0733-08	TCGA-AB-2901-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	5835331	5835331	T	C	SNP	OR52E8	NM_001005168	human	genbank	54_36p	-1	provisional	missense	c.178	p.S60G	0.746	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
UNC93B1	81622	genome.wustl.edu	36	11	67519929	67519929	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2901-03A-01W-0733-08	TCGA-AB-2901-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	67519929	67519929	G	A	SNP	UNC93B1	NM_030930	human	genbank	54_36p	-1	reviewed	missense	c.1091	p.A364V	0.998	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
GRIK3	2899	genome.wustl.edu	36	1	37040090	37040090	+	Silent	SNP	G	G	A			TCGA-AB-2901-03A-01W-0733-08	TCGA-AB-2901-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	37040090	37040090	G	A	SNP	GRIK3	NM_000831	human	genbank	54_36p	-1	reviewed	silent	c.2709	p.P903	0.970	NULL	superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,superfamily_SSF55620	-	no_errors
HECW1	23072	genome.wustl.edu	36	7	43558414	43558414	+	Silent	SNP	G	G	A			TCGA-AB-2901-03A-01W-0733-08	TCGA-AB-2901-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	43558414	43558414	G	A	SNP	HECW1	NM_015052	human	genbank	54_36p	+1	validated	silent	c.4464	p.A1488	0.315	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT	HMMPfam_C2,HMMSmart_C2,HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,superfamily_C2_CaLB	-	no_errors
LOC100131482	100131482	genome.wustl.edu	36	2	180387594	180387594	+	Silent	SNP	T	T	C			TCGA-AB-2901-03A-01W-0733-08	TCGA-AB-2901-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	180387594	180387594	T	C	SNP	LOC100131482	XM_001722616	human	genbank	54_36p	+1	model	silent	c.372	p.N124	1.000	superfamily_Thioredoxin-like,HMMPfam_DIM1	superfamily_Thioredoxin-like,HMMPfam_DIM1	-	no_errors
RYR3	6263	genome.wustl.edu	36	15	31910538	31910538	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2901-03A-01W-0733-08	TCGA-AB-2901-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	31910538	31910538	T	A	SNP	RYR3	NM_001036	human	genbank	54_36p	+1	validated	missense	c.11417	p.L3806Q	0.980	HMMPfam_RIH_assoc	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
IDH1	3417	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2901-03A-01W-0733-08	TCGA-AB-2901-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	208821358	208821358	G	A	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
PLSCR4	57088	genome.wustl.edu	36	3	147422546	147422546	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2901-03A-01W-0733-08	TCGA-AB-2901-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	147422546	147422546	C	G	SNP	PLSCR4	NM_020353	human	genbank	54_36p	-1	validated	missense	c.3	p.M1I	0.979	NULL	HMMPfam_Scramblase	-	no_errors
SALL3	27164	genome.wustl.edu	36	18	74855186	74855186	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2901-03A-01W-0733-08	TCGA-AB-2901-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	74855186	74855186	G	T	SNP	SALL3	NM_171999	human	genbank	54_36p	+1	validated	missense	c.2207	p.R736L	0.958	NULL	HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
AGBL2	79841	genome.wustl.edu	36	11	47668631	47668631	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2901-03A-01W-0733-08	TCGA-AB-2901-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	47668631	47668631	C	A	SNP	AGBL2	NM_024783	human	genbank	54_36p	-1	validated	missense	c.1204	p.D402Y	0.729	superfamily_Zn-dependent exopeptidases	superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14	-	no_errors
CASKIN2	57513	genome.wustl.edu	36	17	71012109	71012109	+	Silent	SNP	C	C	T			TCGA-AB-2901-03A-01W-0733-08	TCGA-AB-2901-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	71012109	71012109	C	T	SNP	CASKIN2	NM_020753	human	genbank	54_36p	-1	validated	silent	c.1362	p.P454	0.000	NULL	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain,HMMPfam_SH3_2	-	no_errors
RBMS1	5937	genome.wustl.edu	36	2	160842078	160842078	+	Silent	SNP	C	C	T			TCGA-AB-2901-03A-01W-0733-08	TCGA-AB-2901-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	160842078	160842078	C	T	SNP	RBMS1	NM_016836	human	genbank	54_36p	-1	reviewed	silent	c.1125	p.T375	0.019	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
