Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ARL3	403	genome.wustl.edu	36	10	104439667	104439667	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	104439667	104439667	G	T	SNP	ARL3	NM_004311	human	genbank	54_36p	-1	reviewed	missense	c.288	p.D96E	1.000	HMMSmart_ARF,superfamily_SSF52540,HMMPfam_Arf	HMMSmart_ARF,superfamily_SSF52540,HMMPfam_Arf,PatternScan_ARF	-	no_errors
BTD	686	genome.wustl.edu	36	3	15661430	15661430	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	15661430	15661430	G	A	SNP	BTD	NM_000060	human	genbank	54_36p	+1	reviewed	missense	c.1063	p.D355N	0.003	NULL	superfamily_Carbon-nitrogen hydrolase,HMMPfam_CN_hydrolase	-	no_errors
KCNA4	3739	genome.wustl.edu	36	11	29989637	29989637	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	29989637	29989637	G	A	SNP	KCNA4	NM_002233	human	genbank	54_36p	-1	reviewed	missense	c.1165	p.R389C	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	HMMPfam_K_channel_TID,superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
STC2	8614	genome.wustl.edu	36	5	172677648	172677648	+	Silent	SNP	G	G	A			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	172677648	172677648	G	A	SNP	STC2	NM_003714	human	genbank	54_36p	-1	reviewed	silent	c.717	p.H239	0.003	HMMPfam_Stanniocalcin	HMMPfam_Stanniocalcin	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310747	25310747	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25310747	25310747	G	A	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2644	p.R882C	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
MYB	4602	genome.wustl.edu	36	6	135552652	135552652	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	135552652	135552652	T	C	SNP	MYB	NM_005375	human	genbank	54_36p	+1	validated	missense	c.244	p.W82R	1.000	HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like	HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like,HMMPfam_Wos2,HMMPfam_Cmyb_C	-	no_errors
CSMD1	64478	genome.wustl.edu	36	8	2953569	2953569	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	2953569	2953569	G	T	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	missense	c.6721	p.L2241I	1.000	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
LOC100131447	100131447	genome.wustl.edu	36	7	48857942	48857942	+	RNA	SNP	G	G	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	48857942	48857942	G	T	SNP	LOC100131447	XR_036885	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
C10orf92	54777	genome.wustl.edu	36	10	134521111	134521111	+	Silent	SNP	G	G	A			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	134521111	134521111	G	A	SNP	C10orf92	ENST00000263170	human	ensembl	54_36p	-1	known	silent	c.30	p.S10	0.001	NULL	NULL	-	no_errors
TRIP4	9325	genome.wustl.edu	36	15	62473369	62473369	+	Splice_Site	SNP	T	T	C			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	62473369	62473369	T	C	SNP	TRIP4	NM_016213	human	genbank	54_36p	+1	validated	splice_site	c.271+2	e2+2	1.000	-	-	-	no_errors
OR2T10	127069	genome.wustl.edu	36	1	246822922	246822922	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	246822922	246822922	G	T	SNP	OR2T10	NM_001004693	human	genbank	54_36p	-1	provisional	nonsense	c.771	p.Y257*	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
STK39	27347	genome.wustl.edu	36	2	168705498	168705498	+	Silent	SNP	C	C	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	168705498	168705498	C	T	SNP	STK39	NM_013233	human	genbank	54_36p	-1	reviewed	silent	c.645	p.A215	0.986	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
LOC100130855	100130855	genome.wustl.edu	36	15	61668351	61668351	+	Silent	SNP	T	T	C			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	61668351	61668351	T	C	SNP	LOC100130855	XM_001719369	human	genbank	54_36p	-1	model	silent	c.696	p.R232	0.000	NULL	NULL	-	no_errors
FAM21B	55747	genome.wustl.edu	36	10	47435897	47435897	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	47435897	47435897	C	A	SNP	FAM21B	NM_018232	human	genbank	54_36p	+1	validated	missense	c.1298	p.S433Y	0.618	NULL	NULL	-	no_errors
GPR137	56834	genome.wustl.edu	36	11	63813205	63813205	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	63813205	63813205	C	T	SNP	GPR137	NM_020155	human	genbank	54_36p	+1	provisional	missense	c.1046	p.A349V	0.081	NULL	NULL	-	no_errors
YY1	7528	genome.wustl.edu	36	14	99798473	99798473	+	Silent	SNP	A	A	G			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	99798473	99798473	A	G	SNP	YY1	NM_003403	human	genbank	54_36p	+1	reviewed	silent	c.759	p.E253	1.000	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
RUNX1T1	862	genome.wustl.edu	36	8	93092464	93092464	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	93092464	93092464	G	T	SNP	RUNX1T1	NM_175634	human	genbank	54_36p	-1	reviewed	missense	c.500	p.S167Y	1.000	HMMPfam_TAFH,HMMSmart_SM00549	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,HMMPfam_TAFH,HMMSmart_SM00549,HMMPfam_NHR2	-	no_errors
C5orf25	375484	genome.wustl.edu	36	5	175649288	175649288	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	175649288	175649288	C	T	SNP	C5orf25	NM_198567	human	genbank	54_36p	+1	validated	missense	c.98	p.T33I	0.324	NULL	NULL	-	no_errors
RUNX1	861	genome.wustl.edu	36	21	35181073	35181074	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	35181073	35181074	-	T	INS	RUNX1	NM_001754	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.288_287	p.N96fs	1.000:1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
MARCH7	64844	genome.wustl.edu	36	2	160313056	160313056	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	160313056	160313056	C	A	SNP	MARCH7	NM_022826	human	genbank	54_36p	+1	validated	missense	c.1009	p.P337T	0.116	NULL	HMMSmart_RINGv,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
CD1B	910	genome.wustl.edu	36	1	156567469	156567469	+	Silent	SNP	C	C	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	156567469	156567469	C	T	SNP	CD1B	NM_001764	human	genbank	54_36p	-1	reviewed	silent	c.69	p.Q23	0.003	NULL	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407	-	no_errors
