Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
DNMT3A	1788	genome.wustl.edu	36	2	25321690	25321690	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25321690	25321690	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.1490	p.C497Y	1.000	NULL	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
MPDZ	8777	genome.wustl.edu	36	9	13214490	13214490	+	Silent	SNP	C	C	T			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	13214490	13214490	C	T	SNP	MPDZ	NM_003829	human	genbank	54_36p	-1	validated	silent	c.276	p.S92	0.705	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_L27_2,superfamily_L27 domain	-	no_errors
WT1	7490	genome.wustl.edu	36	11	32370133	32370133	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	32370133	32370133	G	A	SNP	WT1	NM_024426	human	genbank	54_36p	-1	reviewed	missense	c.1393	p.H465Y	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_WT1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
MYBPHL	343263	genome.wustl.edu	36	1	109640989	109640989	+	Silent	SNP	G	G	A	rs56106946		TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	109640989	109640989	G	A	SNP	MYBPHL	NM_001010985	human	genbank	54_36p	-1	validated	silent	c.669	p.N223	0.996	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
IDH1	3417	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	208821358	208821358	G	A	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
ENSG00000210184	0	genome.wustl.edu	36	MT	12256	12256	+	RNA	SNP	T	T	G			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	12256	12256	T	G	SNP	ENSG00000210184	ENST00000387449	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
IGLV3-27	28791	genome.wustl.edu	36	22	21341172	21341172	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	21341172	21341172	C	T	SNP	IGLV3-27	ENST00000390304	human	ensembl	54_36p	+1	known	nonsense	c.235	p.R79*	0.399	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	-	no_stop_codon:bad_bp_length_for_coding_region
GRIK2	2898	genome.wustl.edu	36	6	102622973	102622973	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	102622973	102622973	G	A	SNP	GRIK2	NM_021956	human	genbank	54_36p	+1	reviewed	missense	c.2621	p.R874Q	1.000	NULL	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
UBP1	7342	genome.wustl.edu	36	3	33425280	33425280	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	33425280	33425280	G	T	SNP	UBP1	NM_014517	human	genbank	54_36p	-1	validated	missense	c.833	p.P278H	1.000	NULL	HMMPfam_CP2,superfamily_SAM/Pointed domain	-	no_errors
RIF1	55183	genome.wustl.edu	36	2	152027712	152027712	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	152027712	152027712	T	A	SNP	RIF1	NM_018151	human	genbank	54_36p	+1	validated	missense	c.3432	p.H1144Q	0.057	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_ABC_TRANSPORTER_1	-	no_errors
MAP7D2	256714	genome.wustl.edu	36	X	19943346	19943346	+	Silent	SNP	C	C	T			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	19943346	19943346	C	T	SNP	MAP7D2	NM_152780	human	genbank	54_36p	-1	provisional	silent	c.1542	p.K514	0.996	HMMPfam_MAP7	HMMPfam_MAP7	-	no_errors
MAGEA4	4103	genome.wustl.edu	36	X	150843192	150843192	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	150843192	150843192	G	A	SNP	MAGEA4	NM_001011548	human	genbank	54_36p	+1	reviewed	missense	c.400	p.A134T	0.126	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
RBBP4	5928	genome.wustl.edu	36	1	32910659	32910659	+	Missense_Mutation	SNP	G	G	A	rs76030726	byCluster;by1000genomes	TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	32910659	32910659	G	A	SNP	RBBP4	NM_005610	human	genbank	54_36p	+1	reviewed	missense	c.988	p.E330K	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
PMS2	5395	genome.wustl.edu	36	7	6008648	6008648	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	6008648	6008648	G	A	SNP	PMS2	NM_000535	human	genbank	54_36p	-1	reviewed	missense	c.499	p.P167S	1.000	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_DNA_mis_repair,HMMPfam_MutL_C	-	no_errors
FAM48A	55578	genome.wustl.edu	36	13	36489471	36489471	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	36489471	36489471	G	C	SNP	FAM48A	NM_001014286	human	genbank	54_36p	-1	validated	missense	c.1903	p.L635V	1.000	NULL	NULL	-	no_errors
GPR153	387509	genome.wustl.edu	36	1	6237310	6237310	+	Silent	SNP	A	A	G			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	6237310	6237310	A	G	SNP	GPR153	NM_207370	human	genbank	54_36p	-1	provisional	silent	c.243	p.G81	0.972	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27490642	27490642	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2919-03A-01W-0745-08	TCGA-AB-2919-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27490642	27490642	C	T	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.2503	p.D835N	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
