Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
IDH1	3417	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2928-03A-01W-0745-08	TCGA-AB-2928-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	208821358	208821358	G	A	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
LOC653720	653720	genome.wustl.edu	36	15	26746467	26746467	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2928-03A-01W-0745-08	TCGA-AB-2928-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	26746467	26746467	A	G	SNP	LOC653720	XM_001724258	human	genbank	54_36p	-1	model	missense	c.1570	p.S524P	0.006	NULL	NULL	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25324020	25324020	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2928-03A-01W-0745-08	TCGA-AB-2928-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25324020	25324020	G	A	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	nonsense	c.958	p.R320*	1.000	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
SEMA3A	10371	genome.wustl.edu	36	7	83430479	83430479	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2928-03A-01W-0745-08	TCGA-AB-2928-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	83430479	83430479	C	T	SNP	SEMA3A	NM_006080	human	genbank	54_36p	-1	reviewed	missense	c.1838	p.R613Q	0.991	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27490629	27490629	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2928-03A-01W-0745-08	TCGA-AB-2928-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27490629	27490629	T	C	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.2516	p.D839G	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	superfamily_SSF48726,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
LOC100129915	100129915	genome.wustl.edu	36	11	55388107	55388107	+	RNA	SNP	C	C	A			TCGA-AB-2928-03A-01W-0745-08	TCGA-AB-2928-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	55388107	55388107	C	A	SNP	LOC100129915	XR_037187	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.074	-	-	-	pseudogene
TET2	54790	genome.wustl.edu	36	4	106410226	106410226	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2928-03A-01W-0745-08	TCGA-AB-2928-11A-01W-0745-08	A	A			A	A	Verified	Valid	Somatic		Capture				Illumina GAIIx	4	106410226	106410226	A	T	SNP	TET2	ENST00000265149	human	ensembl	54_36p	1	known	missense	c.461	p.E154V	1	NULL	NULL	-	NA
CCBE1	147372	genome.wustl.edu	36	18	55254269	55254269	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2928-03A-01W-0745-08	TCGA-AB-2928-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	55254269	55254269	C	T	SNP	CCBE1	NM_133459	human	genbank	54_36p	-1	provisional	missense	c.1072	p.G358R	1.000	NULL	superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_Collagen	-	no_errors
ZNF99	7652	genome.wustl.edu	36	19	22743930	22743930	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2928-03A-01W-0745-08	TCGA-AB-2928-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	22743930	22743930	C	T	SNP	ZNF99	NM_001080409	human	genbank	54_36p	-1	provisional	missense	c.103	p.A35T	0.002	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106377892	106377892	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2928-03A-01W-0745-08	TCGA-AB-2928-11A-01W-0745-08	C	C			C	C	Verified	Valid	Somatic		Capture				Illumina GAIIx	4	106377892	106377892	C	0	DEL	TET2	NM_017628	human	genbank	54_36p	1	validated	frame_shift_del	c.3344	p.P1115fs	1	NULL	NULL	(deletion:cds_exon[106374549,106378046])	NA
RPUSD3	285367	genome.wustl.edu	36	3	9858747	9858747	+	Silent	SNP	C	C	T			TCGA-AB-2928-03A-01W-0745-08	TCGA-AB-2928-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	9858747	9858747	C	T	SNP	RPUSD3	NM_173659	human	genbank	54_36p	-1	validated	silent	c.303	p.T101	0.000	superfamily_Pseudouridine synthase,HMMPfam_PseudoU_synth_2	superfamily_Pseudouridine synthase,HMMPfam_PseudoU_synth_2	-	no_errors
PKD1L2	114780	genome.wustl.edu	36	16	79738404	79738404	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2928-03A-01W-0745-08	TCGA-AB-2928-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	79738404	79738404	C	T	SNP	PKD1L2	ENST00000299598	human	ensembl	54_36p	-1	known	missense	c.5192	p.R1731K	1.000	NULL	HMMPfam_GPS,HMMSmart_SM00303,PatternScan_CHANNEL_COLICIN,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel,superfamily_C-type lectin-like	-	no_errors
ELAVL4	1996	genome.wustl.edu	36	1	50348217	50348217	+	Silent	SNP	G	G	A	rs4253212	byCluster;byFrequency;by1000genomes	TCGA-AB-2928-03A-01W-0745-08	TCGA-AB-2928-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	50348217	50348217	G	A	SNP	ELAVL4	ENST00000371821	human	ensembl	54_36p	+1	known	silent	c.18	p.L6	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
USH2A	7399	genome.wustl.edu	36	1	213910970	213910970	+	Silent	SNP	G	G	A			TCGA-AB-2928-03A-01W-0745-08	TCGA-AB-2928-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	213910970	213910970	G	A	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	silent	c.14100	p.S4700	0.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00560,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
