Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
LOC642738	642738	genome.wustl.edu	36	6	159867365	159867366	+	RNA	INS	-	-	TT			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	159867365	159867366	-	TT	INS	LOC642738	XR_017625	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
OR10C1	442194	genome.wustl.edu	36	6	29493587	29493588	+	Frame_Shift_Ins	INS	-	-	CTGGCCTGTGGGAACA			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	29493587	29493588	-	CTGGCCTGTGGGAACA	INS	OR10C1	ENST00000383554	human	ensembl	54_36p	+1	known	frame_shift_ins	c.552_553	p.S185fs	0.011:0.588	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
TRO	7216	genome.wustl.edu	36	X	54973336	54973336	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	54973336	54973336	G	A	SNP	TRO	NM_001039705	human	genbank	54_36p	+1	reviewed	missense	c.3454	p.A1152T	0.002	NULL	HMMPfam_MAGE	-	no_errors
HLA-J	3137	genome.wustl.edu	36	6	30083172	30083173	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	AT	AT			AT	AT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	30083172	30083173	AT	-	DEL	HLA-J	ENST00000376793	human	ensembl	54_36p	+1	known	frame_shift_del	c.436_437	p.I146fs	0.997:0.995	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	-	no_stop_codon
SCRN3	79634	genome.wustl.edu	36	2	175000827	175000839	+	Frame_Shift_Del	DEL	TCAAATTTATCAG	TCAAATTTATCAG	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	TCAAATTTATCAG	TCAAATTTATCAG			TCAAATTTATCAG	TCAAATTTATCAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	175000827	175000839	TCAAATTTATCAG	-	DEL	SCRN3	NM_024583	human	genbank	54_36p	+1	validated	frame_shift_del	c.1233_1245	p.Y414fs	0.987:0.985:0.984:0.995:1.000:1.000:0.998:1.000:0.998:0.987:0.030:0.000:0.004	NULL	NULL	-	no_errors
FRG1B	284802	genome.wustl.edu	36	20	28239586	28239587	+	In_Frame_Ins	INS	-	-	TTG			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	28239586	28239587	-	TTG	INS	FRG1B	ENST00000278882	human	ensembl	54_36p	+1	known	in_frame_ins	c.169_170	p.59in_frame_insV	0.993:0.999	superfamily_Actin_crosslink,HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
HSP90AB3P	3327	genome.wustl.edu	36	4	89032293	89032294	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	89032293	89032294	-	C	INS	HSP90AB3P	ENST00000327934	human	ensembl	54_36p	+1	known	frame_shift_ins	c.275_276	p.M93fs	1.000:1.000	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90,superfamily_SSF110942	-	no_errors
ATAD5	79915	genome.wustl.edu	36	17	26186082	26186087	+	In_Frame_Del	DEL	CAATGT	CAATGT	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	CAATGT	CAATGT			CAATGT	CAATGT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	26186082	26186087	CAATGT	-	DEL	ATAD5	NM_024857	human	genbank	54_36p	+1	provisional	in_frame_del	c.857_862	p.MS287in_frame_del	0.001:0.001:0.000:0.000:0.000:0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	-	no_errors
ACOT4	122970	genome.wustl.edu	36	14	73130267	73130270	+	Frame_Shift_Del	DEL	CTTA	CTTA	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	CTTA	CTTA			CTTA	CTTA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	73130267	73130270	CTTA	-	DEL	ACOT4	NM_152331	human	genbank	54_36p	+1	validated	frame_shift_del	c.566_569	p.A189fs	1.000:1.000:1.000:0.997	superfamily_SSF53474	HMMPfam_Bile_Hydr_Trans,HMMPfam_BAAT_C,superfamily_SSF53474	-	no_errors
ZNF275	10838	genome.wustl.edu	36	X	152263419	152263427	+	In_Frame_Del	DEL	GTGACCTCT	GTGACCTCT	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	GTGACCTCT	GTGACCTCT			GTGACCTCT	GTGACCTCT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	152263419	152263427	GTGACCTCT	-	DEL	ZNF275	ENST00000370251	human	ensembl	54_36p	+1	known	splice_site_del	c.1+4_12	e1-1	0.009:0.010:0.009:0.004:0.003:0.006:0.011:0.009:0.004	-	-	-	no_errors
IST1	9798	genome.wustl.edu	36	16	70514013	70514018	+	In_Frame_Del	DEL	ATGCCC	ATGCCC	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	ATGCCC	ATGCCC			ATGCCC	ATGCCC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	70514013	70514018	ATGCCC	-	DEL	KIAA0174	NM_014761	human	genbank	54_36p	+1	provisional	in_frame_del	c.688_693	p.PM233in_frame_del	0.999:1.000:1.000:1.000:0.987:0.962	NULL	HMMPfam_DUF292	-	no_errors
DCP1B	196513	genome.wustl.edu	36	12	1932584	1932585	+	In_Frame_Ins	INS	-	-	TGC			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	1932584	1932585	-	TGC	INS	DCP1B	NM_152640	human	genbank	54_36p	-1	validated	in_frame_ins	c.783_782	p.262in_frame_insQ	0.854:0.711	NULL	HMMPfam_DCP1,superfamily_PH domain-like	-	no_errors
MUC4	4585	genome.wustl.edu	36	3	197002507	197002508	+	In_Frame_Ins	INS	-	-	GTCTCCTGCGTAACA			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	197002507	197002508	-	GTCTCCTGCGTAACA	INS	MUC4	NM_018406	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.339_338	p.114in_frame_insVTQET	0.000:0.000	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
DHRSX	207063	genome.wustl.edu	36	X	2149200	2149200	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	2149200	2149200	T	C	SNP	DHRSX	NM_145177	human	genbank	54_36p	-1	validated	missense	c.875	p.H292R	1.000	superfamily_NAD(P)-bd	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT	-	no_errors
OR5P2	120065	genome.wustl.edu	36	11	7774959	7774960	+	In_Frame_Ins	INS	-	-	ATATGGTTACCAGGTAGATGC			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	7774959	7774960	-	ATATGGTTACCAGGTAGATGC	INS	OR5P2	NM_153444	human	genbank	54_36p	-1	provisional	in_frame_ins	c.107_106	p.36in_frame_insCIYLVTI	0.149:0.139	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
MIR548I2	100302277	genome.wustl.edu	36	4	9166914	9166919	+	RNA	DEL	AGAAGG	AGAAGG	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	AGAAGG	AGAAGG			AGAAGG	AGAAGG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	9166914	9166919	AGAAGG	-	DEL	MIRN548I2	ENST00000408348	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors
SLC39A5	283375	genome.wustl.edu	36	12	54915001	54915006	+	In_Frame_Del	DEL	GCTCCG	GCTCCG	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	GCTCCG	GCTCCG			GCTCCG	GCTCCG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	54915001	54915006	GCTCCG	-	DEL	SLC39A5	NM_173596	human	genbank	54_36p	+1	validated	in_frame_del	c.595_600	p.PA202in_frame_del	0.011:0.025:0.047:0.059:0.066:0.018	NULL	HMMPfam_Zip	-	no_errors
TBC1D10B	26000	genome.wustl.edu	36	16	30276935	30276935	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	30276935	30276935	C	T	SNP	TBC1D10B	NM_015527	human	genbank	54_36p	-1	validated	missense	c.1433	p.R478Q	0.716	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMSmart_SM00164,HMMPfam_TBC,PatternScan_ILVD_EDD_1	-	no_errors
LOC388996	388996	genome.wustl.edu	36	2	91159321	91159325	+	RNA	DEL	CAACT	CAACT	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	CAACT	CAACT			CAACT	CAACT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	91159321	91159325	CAACT	-	DEL	LOC388996	XR_017571	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.999:0.998:0.992:0.997:0.996	-	-	-	pseudogene
HLA-J	3137	genome.wustl.edu	36	6	30083176	30083178	+	In_Frame_Del	DEL	CCC	CCC	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	CCC	CCC			CCC	CCC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	30083176	30083178	CCC	-	DEL	HLA-J	ENST00000376793	human	ensembl	54_36p	+1	known	in_frame_del	c.440_442	p.AL147in_frame_delV	0.945:0.954:0.957	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	-	no_stop_codon
SYNJ1	8867	genome.wustl.edu	36	21	32925799	32925800	+	In_Frame_Ins	INS	-	-	AGTATT			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	32925799	32925800	-	AGTATT	INS	SYNJ1	NM_003895	human	genbank	54_36p	-1	validated	in_frame_ins	c.4099_4098	p.1366in_frame_insNT	0.140:0.120	NULL	HMMPfam_Syja_N,superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,HMMPfam_DUF1866,superfamily_RNA-binding domain RBD	-	no_errors
OR7G3	390883	genome.wustl.edu	36	19	9097698	9097699	+	Frame_Shift_Ins	INS	-	-	ATGGT			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	9097698	9097699	-	ATGGT	INS	OR7G3	NM_001001958	human	genbank	54_36p	-1	provisional	frame_shift_ins	c.929_928	p.S310fs	0.000:0.001	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
KCNA5	3741	genome.wustl.edu	36	12	5025095	5025095	+	Silent	SNP	C	C	A			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	5025095	5025095	C	A	SNP	KCNA5	NM_002234	human	genbank	54_36p	+1	reviewed	silent	c.1521	p.T507	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
CYP4A22	284541	genome.wustl.edu	36	1	47387010	47387010	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	47387010	47387010	G	A	SNP	CYP4A22	NM_001010969	human	genbank	54_36p	+1	reviewed	missense	c.1514	p.R505H	0.934	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
TMEM87B	84910	genome.wustl.edu	36	2	112549007	112549009	+	In_Frame_Del	DEL	AAT	AAT	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	AAT	AAT			AAT	AAT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	112549007	112549009	AAT	-	DEL	TMEM87B	NM_032824	human	genbank	54_36p	+1	validated	in_frame_del	c.498_500	p.M167in_frame_del	0.866:0.849:0.815	NULL	HMMPfam_Lung_7-TM_R	-	no_errors
CTSA	5476	genome.wustl.edu	36	20	43953645	43953647	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	CTG	CTG			CTG	CTG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	43953645	43953647	CTG	-	DEL	CTSA	NM_000308	human	genbank	54_36p	+1	reviewed	in_frame_del	c.85_87	p.L32in_frame_del	0.066:0.073:0.080	NULL	HMMPfam_Peptidase_S10,PatternScan_CARBOXYPEPT_SER_SER,PatternScan_CARBOXYPEPT_SER_HIS,superfamily_alpha/beta-Hydrolases	-	no_errors
IGLV3-22	28795	genome.wustl.edu	36	22	21377145	21377146	+	Frame_Shift_Ins	INS	-	-	TGATATA			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	21377145	21377146	-	TGATATA	INS	IGLV3-22	ENST00000390307	human	ensembl	54_36p	+1	known	frame_shift_ins	c.183_184	p.P61fs	0.891:0.878	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon
MAT1A	4143	genome.wustl.edu	36	10	82029970	82029970	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	82029970	82029970	C	T	SNP	MAT1A	NM_000429	human	genbank	54_36p	-1	reviewed	missense	c.488	p.R163Q	0.977	HMMPfam_S-AdoMet_synt_M,superfamily_S-AdoMet_synt	HMMPfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synt,HMMPfam_S-AdoMet_synt_M,PatternScan_ADOMET_SYNTHETASE_1,HMMPfam_S-AdoMet_synt_C,PatternScan_ADOMET_SYNTHETASE_2	-	no_errors
GFM2	84340	genome.wustl.edu	36	5	74057603	74057608	+	In_Frame_Del	DEL	ACTCAA	ACTCAA	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	ACTCAA	ACTCAA			ACTCAA	ACTCAA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	74057603	74057608	ACTCAA	-	DEL	GFM2	NM_032380	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1831_1826	p.FE609in_frame_del	0.994:0.991:0.997:0.996:0.984:0.962	superfamily_Ribosomal protein S5 domain 2-like	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,superfamily_EF-G C-terminal domain-like,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_EFG_IV,HMMPfam_EFG_C	-	no_errors
FRG1B	284802	genome.wustl.edu	36	20	28239585	28239586	+	In_Frame_Ins	INS	-	-	CTT			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	28239585	28239586	-	CTT	INS	FRG1B	ENST00000278882	human	ensembl	54_36p	+1	known	in_frame_ins	c.168_169	p.57in_frame_insL	0.989:0.993	superfamily_Actin_crosslink,HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
ENSG00000212024	0	genome.wustl.edu	36	7	29686918	29686920	+	RNA	DEL	ACA	ACA	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	ACA	ACA			ACA	ACA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	29686918	29686920	ACA	-	DEL	ENSG00000212024	ENST00000390735	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors
WT1	7490	genome.wustl.edu	36	11	32374517	32374518	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	32374517	32374518	-	A	INS	WT1	NM_024426	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1111_1110	p.V370fs	1.000:0.986	HMMPfam_WT1	HMMPfam_WT1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
WT1	7490	genome.wustl.edu	36	11	32374521	32374522	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	32374521	32374522	-	C	INS	WT1	NM_024426	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1107_1106	p.R370fs	0.458:0.832	HMMPfam_WT1	HMMPfam_WT1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
MIR548A3	693127	genome.wustl.edu	36	8	105565812	105565821	+	RNA	DEL	ATTGAAAGTA	ATTGAAAGTA	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	ATTGAAAGTA	ATTGAAAGTA			ATTGAAAGTA	ATTGAAAGTA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	105565812	105565821	ATTGAAAGTA	-	DEL	MIRN548A3	ENST00000385297	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.004:0.003:0.004:0.006:0.012:0.016:0.019:0.020:0.021:0.026	-	-	-	no_errors
OR5H6	79295	genome.wustl.edu	36	3	99466178	99466186	+	In_Frame_Del	DEL	TGTAACCAC	TGTAACCAC	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	TGTAACCAC	TGTAACCAC			TGTAACCAC	TGTAACCAC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	99466178	99466186	TGTAACCAC	-	DEL	OR5H6	NM_001005479	human	genbank	54_36p	+1	provisional	in_frame_del	c.360_368	p.VTT124in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
LOC440577	440577	genome.wustl.edu	36	1	27406494	27406499	+	In_Frame_Del	DEL	GATGAT	GATGAT	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	GATGAT	GATGAT			GATGAT	GATGAT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	27406494	27406499	GATGAT	-	DEL	LOC440577	XM_496355	human	genbank	54_36p	+1	model	in_frame_del	c.475_480	p.DD162in_frame_del	0.946:0.943:0.941:0.940:0.938:0.938	HMMPfam_Nucleoplasmin	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors
MIR509-2	100126301	genome.wustl.edu	36	X	146148031	146148031	+	RNA	DEL	T	T	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	146148031	146148031	T	-	DEL	MIRN509-2	ENST00000390724	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.026	-	-	-	no_errors
LOC647415	647415	genome.wustl.edu	36	7	6931859	6931860	+	RNA	INS	-	-	GTG			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	6931859	6931860	-	GTG	INS	LOC647415	XR_037564	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
OR5M10	390167	genome.wustl.edu	36	11	56101420	56101427	+	Frame_Shift_Del	DEL	CATTGAAG	CATTGAAG	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	CATTGAAG	CATTGAAG			CATTGAAG	CATTGAAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	56101420	56101427	CATTGAAG	-	DEL	OR5M10	NM_001004741	human	genbank	54_36p	-1	provisional	frame_shift_del	c.354_347	p.A116fs	1.000:1.000:0.988:0.000:0.000:0.000:0.000:0.001	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ZSCAN5A	79149	genome.wustl.edu	36	19	61425905	61425905	+	Silent	SNP	T	T	C			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	61425905	61425905	T	C	SNP	ZSCAN5A	NM_024303	human	genbank	54_36p	-1	provisional	silent	c.606	p.L202	0.014	NULL	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ARAP2	116984	genome.wustl.edu	36	4	35825560	35825563	+	Splice_Site	DEL	CTTA	CTTA	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	CTTA	CTTA			CTTA	CTTA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	35825560	35825563	CTTA	-	DEL	ARAP2	NM_015230	human	genbank	54_36p	-1	reviewed	splice_site_del	c.3199+2_3199+1	e17+2	0.990:0.994:0.996:1.000	-	-	-	no_errors
PC	5091	genome.wustl.edu	36	11	66395519	66395519	+	Silent	SNP	G	G	A			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	66395519	66395519	G	A	SNP	PC	NM_000920	human	genbank	54_36p	-1	reviewed	silent	c.330	p.N110	0.244	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like,HMMPfam_CPSase_L_D2,superfamily_SSF56059,superfamily_Rudmnt_hyb_motif,HMMPfam_Biotin_carb_C,superfamily_SSF51569,HMMPfam_HMGL-like,HMMPfam_PYC_OADA,superfamily_SSF89000,superfamily_Hybrid_motif,HMMPfam_Biotin_lipoyl,PatternScan_BIOTIN	-	no_errors
HSP90AB3P	3327	genome.wustl.edu	36	4	89032295	89032296	+	In_Frame_Ins	INS	-	-	ATT			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	89032295	89032296	-	ATT	INS	HSP90AB3P	ENST00000327934	human	ensembl	54_36p	+1	known	in_frame_ins	c.277_278	p.M93in_frame_insNL	0.997:1.000	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90,superfamily_SSF110942	-	no_errors
SLC22A1	6580	genome.wustl.edu	36	6	160480888	160480895	+	Frame_Shift_Del	DEL	TGGTAAGT	TGGTAAGT	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	TGGTAAGT	TGGTAAGT			TGGTAAGT	TGGTAAGT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	160480888	160480895	TGGTAAGT	-	DEL	SLC22A1	NM_003057	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.1275_1276	p.D426fs	0.906:0.911	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	PatternScan_SUGAR_TRANSPORT_1,HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
ACOT4	122970	genome.wustl.edu	36	14	73130264	73130265	+	Frame_Shift_Ins	INS	-	-	TCAA			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	73130264	73130265	-	TCAA	INS	ACOT4	NM_152331	human	genbank	54_36p	+1	validated	frame_shift_ins	c.563_564	p.A189fs	0.936:0.937	superfamily_SSF53474	HMMPfam_Bile_Hydr_Trans,superfamily_SSF53474,HMMPfam_BAAT_C	-	no_errors
MPRIP	23164	genome.wustl.edu	36	17	16980287	16980289	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	CAG	CAG			CAG	CAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	16980287	16980289	CAG	-	DEL	MPRIP	NM_015134	human	genbank	54_36p	+1	validated	in_frame_del	c.534_536	p.S182in_frame_del	0.997:0.998:0.998	NULL	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
KRTAP10-7	386675	genome.wustl.edu	36	21	44845084	44845098	+	In_Frame_Del	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG			CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	44845084	44845098	CTGCTGCGCCCCCAG	-	DEL	KRTAP10-7	NM_198689	human	genbank	54_36p	+1	validated	in_frame_del	c.135_149	p.PSCCA49in_frame_del	0.999:0.999:1.000:0.999:0.995:0.979:0.353:0.334:0.435:0.672:0.824:0.909:0.920:0.914:0.918	NULL	HMMPfam_Keratin_B2	-	no_errors
CHIT1	1118	genome.wustl.edu	36	1	201455003	201455031	+	Frame_Shift_Del	DEL	CCACTGGTTGTCCCGGAAGATGTAGGGCA	CCACTGGTTGTCCCGGAAGATGTAGGGCA	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	CCACTGGTTGTCCCGGAAGATGTAGGGCA	CCACTGGTTGTCCCGGAAGATGTAGGGCA			CCACTGGTTGTCCCGGAAGATGTAGGGCA	CCACTGGTTGTCCCGGAAGATGTAGGGCA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	201455003	201455031	CCACTGGTTGTCCCGGAAGATGTAGGGCA	-	DEL	CHIT1	NM_003465	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.993_965	p.V322fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:0.997:0.973:0.966:0.965:0.969:0.967:0.962:0.928:0.388:0.371:0.399:0.466:0.478:0.447:0.979:0.987:0.957:1.000:1.000:1.000:1.000	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain	HMMPfam_Glyco_hydro_18,PatternScan_CHITINASE_18,HMMPfam_CBM_14,HMMSmart_SM00494,superfamily_Invertebrate chitin-binding proteins,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain	-	no_errors
LOC158345	158345	genome.wustl.edu	36	9	7467245	7467256	+	RNA	DEL	GCTGCTGCAGCA	GCTGCTGCAGCA	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	GCTGCTGCAGCA	GCTGCTGCAGCA			GCTGCTGCAGCA	GCTGCTGCAGCA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	7467245	7467256	GCTGCTGCAGCA	-	DEL	LOC158345	XR_017130	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.311:0.313:0.346:0.381:0.391:0.391:0.403:0.562:0.688:0.759:0.786:0.809	-	-	-	pseudogene
NMUR2	56923	genome.wustl.edu	36	5	151764407	151764407	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	151764407	151764407	G	A	SNP	NMUR2	NM_020167	human	genbank	54_36p	-1	reviewed	missense	c.461	p.A154V	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
HLA-J	3137	genome.wustl.edu	36	6	30083180	30083182	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	GAA	GAA			GAA	GAA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	30083180	30083182	GAA	-	DEL	HLA-J	ENST00000376793	human	ensembl	54_36p	+1	known	in_frame_del	c.444_446	p.N149in_frame_del	0.888:0.866:0.855	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	-	no_stop_codon
GTF2IRD2B	389524	genome.wustl.edu	36	7	74201707	74201707	+	Silent	SNP	C	C	T			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	74201707	74201707	C	T	SNP	GTF2IRD2B	NM_001003795	human	genbank	54_36p	+1	reviewed	silent	c.1518	p.P506	0.376	NULL	HMMPfam_GTF2I	-	no_errors
RRP7B	91695	genome.wustl.edu	36	22	41300059	41300060	+	RNA	INS	-	-	T			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	41300059	41300060	-	T	INS	RRP7B	NR_002184	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.000:0.000	-	-	-	pseudogene
NBPF12	440675	genome.wustl.edu	36	1	144929398	144929398	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	144929398	144929398	A	C	SNP	NBPF12	XM_001715810	human	genbank	54_36p	+1	model	missense	c.651	p.R217S	0.000	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_errors
LOC647954	647954	genome.wustl.edu	36	5	122764567	122764568	+	RNA	INS	-	-	TCT			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	122764567	122764568	-	TCT	INS	LOC647954	XR_038441	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
LOC642943	642943	genome.wustl.edu	36	9	94689865	94689870	+	RNA	DEL	GGGGCA	GGGGCA	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	GGGGCA	GGGGCA			GGGGCA	GGGGCA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	94689865	94689870	GGGGCA	-	DEL	LOC642943	XR_039168	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.058:0.057:0.056:0.055:0.053:0.051	-	-	-	pseudogene
KRTAP10-2	386679	genome.wustl.edu	36	21	44795188	44795202	+	In_Frame_Del	DEL	CTTGCAGCAGACAGG	CTTGCAGCAGACAGG	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	CTTGCAGCAGACAGG	CTTGCAGCAGACAGG			CTTGCAGCAGACAGG	CTTGCAGCAGACAGG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	44795188	44795202	CTTGCAGCAGACAGG	-	DEL	KRTAP10-2	NM_198693	human	genbank	54_36p	-1	reviewed	in_frame_del	c.582_568	p.PVCCK190in_frame_del	0.001:0.000:0.038:0.263:0.912:0.967:0.990:0.984:0.905:0.270:0.059:0.015:0.006:0.075:0.088	NULL	HMMPfam_Keratin_B2	-	no_errors
PRUNE2	158471	genome.wustl.edu	36	9	78513955	78513956	+	In_Frame_Ins	INS	-	-	TGACTGTTGCAG			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	78513955	78513956	-	TGACTGTTGCAG	INS	PRUNE2	ENST00000376718	human	ensembl	54_36p	-1	known	in_frame_ins	c.1978_1977	p.659in_frame_insLQQS	0.000:0.000	NULL	HMMSmart_SM00516,superfamily_CRAL/TRIO domain,superfamily_Ferritin-like	-	no_errors
ZAN	7455	genome.wustl.edu	36	7	100223498	100223532	+	Frame_Shift_Del	DEL	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT			GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	100223498	100223532	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	-	DEL	ZAN	ENST00000349350	human	ensembl	54_36p	+1	known	frame_shift_del	c.7028_7062	p.F2344fs	0.088:0.076:0.047:0.031:0.008:0.004:0.007:0.317:0.790:0.908:0.967:0.964:0.963:0.997:1.000:0.999:0.997:0.968:0.891:0.954:1.000:1.000:1.000:0.999:0.998:0.998:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.990:0.736	HMMPfam_VWD,HMMSmart_SM00216	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMSmart_SM00214,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMPfam_TIL_assoc,HMMPfam_EGF,HMMSmart_SM00181,HMMSmart_SM00215,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_C8,HMMPfam_TIL,superfamily_EGF/Laminin	-	no_errors
GPR50	9248	genome.wustl.edu	36	X	150100216	150100227	+	In_Frame_Del	DEL	CACCACTGGCCA	CACCACTGGCCA	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	CACCACTGGCCA	CACCACTGGCCA			CACCACTGGCCA	CACCACTGGCCA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	150100216	150100227	CACCACTGGCCA	-	DEL	GPR50	NM_004224	human	genbank	54_36p	+1	validated	in_frame_del	c.1503_1514	p.TTGH502in_frame_del	0.003:0.001:0.002:0.022:0.100:0.726:0.738:0.758:0.720:0.715:0.346:0.355	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_TRYPSIN_HIS	-	no_errors
