Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
KDM3B	51780	genome.wustl.edu	36	5	137736316	137736316	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	137736316	137736316	C	A	SNP	JMJD1B	NM_016604	human	genbank	54_36p	+1	validated	missense	c.247	p.H83N	1.000	NULL	superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC	-	no_errors
ENSG00000198491	0	genome.wustl.edu	36	3	188407982	188407982	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	188407982	188407982	A	-	DEL	ENSG00000198491	ENST00000356133	human	ensembl	54_36p	-1	known	frame_shift_del	c.15	p.Q6fs	0.000	NULL	NULL	-	no_errors
CADPS	8618	genome.wustl.edu	36	3	62553353	62553353	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	62553353	62553353	C	T	SNP	CADPS	NM_003716	human	genbank	54_36p	-1	reviewed	missense	c.1436	p.R479Q	0.998	HMMPfam_C2	HMMPfam_C2,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041,superfamily_PH domain-like	-	no_errors
ASB16	92591	genome.wustl.edu	36	17	39611196	39611196	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	39611196	39611196	G	T	SNP	ASB16	NM_080863	human	genbank	54_36p	+1	reviewed	missense	c.1274	p.S425I	0.000	HMMPfam_SOCS_box	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_SOCS_box	-	no_errors
MT-ND2	0	genome.wustl.edu	36	MT	4598	4598	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	4598	4598	T	C	SNP	MT-ND2	ENST00000361453	human	ensembl	54_36p	+1	known	missense	c.128	p.V43A	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1,HMMPfam_NADH_dehy_S2_C	-	no_stop_codon:bad_bp_length_for_coding_region
SACS	26278	genome.wustl.edu	36	13	22840627	22840627	+	Splice_Site	SNP	C	C	A			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	22840627	22840627	C	A	SNP	SACS	ENST00000382292	human	ensembl	54_36p	-1	known	splice_site	c.260-1	e4-1	1.000	-	-	-	no_errors
SERPINA12	145264	genome.wustl.edu	36	14	94034210	94034210	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	94034210	94034210	C	T	SNP	SERPINA12	NM_173850	human	genbank	54_36p	-1	provisional	missense	c.278	p.S93N	0.049	superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN	PatternScan_SERPIN,superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN	-	no_errors
ZNF460	10794	genome.wustl.edu	36	19	62494825	62494825	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	62494825	62494825	A	T	SNP	ZNF460	NM_006635	human	genbank	54_36p	+1	validated	missense	c.1104	p.Q368H	0.012	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PPPDE2	27351	genome.wustl.edu	36	22	40330018	40330018	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	40330018	40330018	G	T	SNP	PPPDE2	NM_015704	human	genbank	54_36p	-1	provisional	missense	c.266	p.S89Y	1.000	HMMPfam_DUF862	HMMPfam_DUF862	-	no_errors
DHTKD1	55526	genome.wustl.edu	36	10	12194961	12194961	+	Silent	SNP	T	T	G			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	12194961	12194961	T	G	SNP	DHTKD1	NM_018706	human	genbank	54_36p	+1	validated	silent	c.2211	p.V737	0.112	HMMPfam_Transket_pyr,superfamily_Thiamin diphosphate-binding fold (THDP-binding)	HMMPfam_E1_dh,HMMPfam_Transket_pyr,superfamily_Thiamin diphosphate-binding fold (THDP-binding)	-	no_errors
ATP6V1C1	528	genome.wustl.edu	36	8	104137290	104137290	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	104137290	104137290	G	T	SNP	ATP6V1C1	NM_001695	human	genbank	54_36p	+1	reviewed	missense	c.591	p.W197C	1.000	HMMPfam_V-ATPase_C	HMMPfam_V-ATPase_C	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7517846	7517846	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.817	p.R273C	0.797	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
YEATS2	55689	genome.wustl.edu	36	3	185003759	185003759	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	185003759	185003759	C	T	SNP	YEATS2	NM_018023	human	genbank	54_36p	+1	provisional	missense	c.3524	p.S1175F	1.000	NULL	HMMPfam_YEATS	-	no_errors
ZIC2	7546	genome.wustl.edu	36	13	99433251	99433251	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	99433251	99433251	G	A	SNP	ZIC2	NM_007129	human	genbank	54_36p	+1	reviewed	missense	c.932	p.G311D	1.000	HMMSmart_ZnF_C2H2	HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC728532	728532	genome.wustl.edu	36	10	51694780	51694780	+	RNA	SNP	C	C	T			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	51694780	51694780	C	T	SNP	LOC728532	XR_015428	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
C6orf106	64771	genome.wustl.edu	36	6	34730508	34730508	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	34730508	34730508	T	C	SNP	C6orf106	NM_024294	human	genbank	54_36p	-1	validated	missense	c.185	p.Y62C	1.000	superfamily_UBA-like	superfamily_UBA-like	-	no_errors
EPHA3	2042	genome.wustl.edu	36	3	89611262	89611262	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	89611262	89611262	G	A	SNP	EPHA3	NM_005233	human	genbank	54_36p	+1	reviewed	missense	c.2872	p.V958M	0.994	HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SAM/Pointed domain	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SAM/Pointed domain	-	no_errors
FLT1	2321	genome.wustl.edu	36	13	27899448	27899448	+	Silent	SNP	G	G	C			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27899448	27899448	G	C	SNP	FLT1	NM_002019	human	genbank	54_36p	-1	validated	silent	c.1284	p.P428	0.997	superfamily_Immunoglobulin	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin	-	no_errors
USP48	84196	genome.wustl.edu	36	1	21905663	21905663	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	21905663	21905663	C	A	SNP	USP48	NM_032236	human	genbank	54_36p	-1	reviewed	nonsense	c.2095	p.E699*	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_Ubiquitin-like	-	no_errors
LOC728448	728448	genome.wustl.edu	36	1	39780077	39780077	+	RNA	SNP	G	G	C			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	39780077	39780077	G	C	SNP	LOC728448	NR_003929	human	genbank	54_36p	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
CD40LG	959	genome.wustl.edu	36	X	135569162	135569162	+	Silent	SNP	G	G	A			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	135569162	135569162	G	A	SNP	CD40LG	NM_000074	human	genbank	54_36p	+1	reviewed	silent	c.708	p.S236	0.894	superfamily_TNF_like,HMMSmart_TNF,HMMPfam_TNF	superfamily_TNF_like,HMMSmart_TNF,HMMPfam_TNF,PatternScan_TNF_1	-	no_errors
ERCC3	2071	genome.wustl.edu	36	2	127753234	127753234	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	127753234	127753234	G	A	SNP	ERCC3	NM_000122	human	genbank	54_36p	-1	reviewed	missense	c.1715	p.A572V	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_ResIII,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
PRAMEF11	440560	genome.wustl.edu	36	1	12807570	12807570	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	12807570	12807570	C	T	SNP	PRAMEF11	XM_001714837	human	genbank	54_36p	-1	model	missense	c.1358	p.R453H	0.033	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CACNA2D3	55799	genome.wustl.edu	36	3	54905879	54905879	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	54905879	54905879	C	A	SNP	CACNA2D3	NM_018398	human	genbank	54_36p	+1	reviewed	nonsense	c.2310	p.Y770*	1.000	NULL	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Cache_1,HMMPfam_VWA_N,superfamily_vWA-like	-	no_errors
PRICKLE2	166336	genome.wustl.edu	36	3	64060325	64060325	+	Silent	SNP	G	G	A			TCGA-AB-2943-03A-01W-0745-08	TCGA-AB-2943-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	64060325	64060325	G	A	SNP	PRICKLE2	NM_198859	human	genbank	54_36p	-1	validated	silent	c.1977	p.G659	0.036	NULL	HMMPfam_PET,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_SSF57716	-	no_errors
