Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
DROSHA	29102	genome.wustl.edu	36	5	31445149	31445149	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	31445149	31445149	T	A	SNP	RNASEN	NM_013235	human	genbank	54_36p	-1	validated	missense	c.3715	p.T1239S	1.000	HMMSmart_SM00535,superfamily_RNase III catalytic domain-like (Pfam 00636)	HMMPfam_Ribonuclease_3,HMMSmart_SM00535,PatternScan_RNASE_3_1,superfamily_RNase III catalytic domain-like (Pfam 00636),HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like	-	no_errors
CACNA1A	773	genome.wustl.edu	36	19	13231431	13231431	+	Silent	SNP	C	C	T			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	13231431	13231431	C	T	SNP	CACNA1A	ENST00000325084	human	ensembl	54_36p	-1	known	silent	c.4338	p.V1446	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
ATP1B4	23439	genome.wustl.edu	36	X	119389085	119389085	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	119389085	119389085	T	C	SNP	ATP1B4	NM_012069	human	genbank	54_36p	+1	validated	missense	c.542	p.F181S	1.000	HMMPfam_Na_K-ATPase	HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_1,PatternScan_ATPASE_NA_K_BETA_2	-	no_errors
ZC3H18	124245	genome.wustl.edu	36	16	87216191	87216191	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	16	87216191	87216191	C	T	SNP	ZC3H18	NM_144604	human	genbank	54_36p	+1	provisional	nonsense	c.1561	p.R521*	1.000	NULL	HMMPfam_zf-CCCH,HMMSmart_SM00356	-	no_errors
CYP4F8	11283	genome.wustl.edu	36	19	15600592	15600592	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	15600592	15600592	G	A	SNP	CYP4F8	ENST00000325723	human	ensembl	54_36p	+1	known	missense	c.1333	p.D445N	0.996	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
FRMD8	83786	genome.wustl.edu	36	11	64917675	64917675	+	Silent	SNP	G	G	A			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	64917675	64917675	G	A	SNP	FRMD8	NM_031904	human	genbank	54_36p	+1	validated	silent	c.309	p.E103	0.999	HMMSmart_SM00295	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295	-	no_errors
ZNF43	7594	genome.wustl.edu	36	19	21783552	21783552	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	21783552	21783552	C	T	SNP	ZNF43	NM_003423	human	genbank	54_36p	-1	validated	missense	c.1127	p.G376D	0.636	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LARP4B	23185	genome.wustl.edu	36	10	861204	861204	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	861204	861204	G	A	SNP	LARP5	NM_015155	human	genbank	54_36p	-1	provisional	missense	c.1285	p.P429S	0.992	NULL	"HMMPfam_La,HMMSmart_SM00715,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
ASTL	431705	genome.wustl.edu	36	2	96164876	96164876	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	96164876	96164876	G	A	SNP	ASTL	NM_001002036	human	genbank	54_36p	-1	validated	missense	c.184	p.L62F	0.996	NULL	"HMMPfam_Astacin,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
STAG2	10735	genome.wustl.edu	36	X	123025397	123025397	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	123025397	123025397	C	T	SNP	STAG2	NM_001042749	human	genbank	54_36p	+1	validated	nonsense	c.1840	p.R614*	1.000	superfamily_ARM-type_fold	HMMPfam_STAG,superfamily_ARM-type_fold	-	no_errors
RIMS1	22999	genome.wustl.edu	36	6	72863575	72863575	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	72863575	72863575	C	T	SNP	RIMS1	NM_014989	human	genbank	54_36p	+1	validated	missense	c.448	p.R150W	1.000	superfamily_FYVE/PHD zinc finger	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger,PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
DOCK2	1794	genome.wustl.edu	36	5	169059712	169059712	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	169059712	169059712	A	G	SNP	DOCK2	NM_004946	human	genbank	54_36p	+1	validated	missense	c.1249	p.I417V	1.000	NULL	HMMSmart_SM00326,superfamily_SH3-domain,superfamily_Cytochrome c,HMMPfam_SH3_2	-	no_errors
SRSF6	6431	genome.wustl.edu	36	20	41521935	41521935	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	20	41521935	41521935	T	A	SNP	SFRS6	NM_006275	human	genbank	54_36p	+1	reviewed	missense	c.367	p.W123R	1.000	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	-	-			-	-	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
CALD1	800	genome.wustl.edu	36	7	134264058	134264058	+	Silent	SNP	A	A	C			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	7	134264058	134264058	A	C	SNP	CALD1	NM_033138	human	genbank	54_36p	+1	reviewed	silent	c.85	p.R29	1.000	HMMPfam_Caldesmon	HMMPfam_Caldesmon,PatternScan_PHOSPHOPANTETHEINE	-	no_errors
TUFT1	7286	genome.wustl.edu	36	1	149813415	149813415	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	149813415	149813415	G	A	SNP	TUFT1	NM_020127	human	genbank	54_36p	+1	validated	missense	c.640	p.A214T	0.973	NULL	NULL	-	no_errors
FANCI	55215	genome.wustl.edu	36	15	87648123	87648123	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	15	87648123	87648123	T	A	SNP	FANCI	NM_018193	human	genbank	54_36p	+1	reviewed	missense	c.2851	p.S951T	0.084	NULL	NULL	-	no_errors
MAP3K15	389840	genome.wustl.edu	36	X	19299399	19299399	+	Silent	SNP	G	G	A			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	19299399	19299399	G	A	SNP	MAP3K15	NM_001001671	human	genbank	54_36p	-1	validated	silent	c.1704	p.F568	1.000	NULL	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_SAM_homology,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
DNAH5	1767	genome.wustl.edu	36	5	13947834	13947834	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	13947834	13947834	G	T	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.2356	p.Q786K	1.000	HMMPfam_DHC_N1	HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184225244	184225244	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	184225244	184225244	A	G	SNP	HMCN1	NM_031935	human	genbank	54_36p	+1	reviewed	missense	c.3050	p.K1017R	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	PatternScan_ASX_HYDROXYL,PatternScan_CECROPIN,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00179,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_I-set,HMMPfam_ig,PatternScan_EGF_CA,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	20901558	20901558	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	16	20901558	20901558	G	C	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.7845	p.D2615E	0.829	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000209815	0	genome.wustl.edu	36	11	59023087	59023087	+	RNA	SNP	C	C	T			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	59023087	59023087	C	T	SNP	ENSG00000209815	ENST00000387080	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.000	-	-	-	pseudogene
uc002rsf.1	0	genome.wustl.edu	36	2	42033936	42033936	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	42033936	42033936	C	G	SNP	uc002rsf.1	ENST00000403980	human	ensembl	54_36p	-1	known	missense	c.118	p.V40L	0.000	NULL	NULL	-	no_errors
C10orf118	55088	genome.wustl.edu	36	10	115881891	115881891	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	115881891	115881891	A	C	SNP	C10orf118	NM_018017	human	genbank	54_36p	-1	validated	missense	c.1698	p.S566R	1.000	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors
KIAA0240	23506	genome.wustl.edu	36	6	42905665	42905665	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	42905665	42905665	G	A	SNP	KIAA0240	NM_015349	human	genbank	54_36p	+1	validated	missense	c.1616	p.R539Q	0.988	NULL	NULL	-	no_errors
MIR1267	100302286	genome.wustl.edu	36	13	106981565	106981565	+	RNA	SNP	G	G	T			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	106981565	106981565	G	T	SNP	MIRN1267	ENST00000408723	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.023	-	-	-	no_errors
MORC3	23515	genome.wustl.edu	36	21	36633035	36633035	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	21	36633035	36633035	T	C	SNP	MORC3	NM_015358	human	genbank	54_36p	+1	reviewed	missense	c.554	p.L185P	1.000	superfamily_ATP_bd_ATPase	HMMPfam_HATPase_c,superfamily_ATP_bd_ATPase,HMMPfam_zf-CW	-	no_errors
PTPN11	5781	genome.wustl.edu	36	12	111411267	111411267	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2972-03A-01D-0739-09	TCGA-AB-2972-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	111411267	111411267	T	C	SNP	PTPN11	NM_002834	human	genbank	54_36p	+1	reviewed	missense	c.1504	p.S502P	1.000	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_SH2 domain	-	no_errors
