Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
SETD5	55209	genome.wustl.edu	36	3	9460062	9460062	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	9460062	9460062	C	T	SNP	SETD5	NM_001080517	human	genbank	54_36p	+1	provisional	missense	c.1148	p.A383V	1.000	superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317	superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317	-	no_errors
LILRA6	79168	genome.wustl.edu	36	19	59436162	59436162	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59436162	59436162	G	A	SNP	LILRA6	NM_024318	human	genbank	54_36p	-1	validated	missense	c.1058	p.T353I	0.002	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
PTPN13	5783	genome.wustl.edu	36	4	87926055	87926055	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	87926055	87926055	A	G	SNP	PTPN13	NM_080685	human	genbank	54_36p	+1	reviewed	missense	c.6302	p.E2101G	0.919	NULL	HMMSmart_KIND,superfamily_SSF101690,HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,superfamily_FERM_3-hlx,HMMPfam_FERM_M,superfamily_SSF50729,HMMPfam_FERM_C,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase	-	no_errors
LOC729212	729212	genome.wustl.edu	36	22	29379889	29379889	+	RNA	SNP	A	A	G			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	29379889	29379889	A	G	SNP	LOC729212	XR_015827	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SEC23A	10484	genome.wustl.edu	36	14	38615037	38615037	+	Silent	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	38615037	38615037	G	A	SNP	SEC23A	NM_006364	human	genbank	54_36p	-1	reviewed	silent	c.840	p.P280	0.998	HMMPfam_Sec23_trunk,superfamily_SSF53300,superfamily_SSF81995	HMMPfam_zf-Sec23_Sec24,superfamily_Znf_Sec23_Sec24,HMMPfam_Sec23_trunk,HMMPfam_Sec23_helical,superfamily_Sec23_helical,HMMPfam_Gelsolin,HMMPfam_Sec23_BS,superfamily_SSF53300,superfamily_SSF81995,superfamily_SSF82754	-	no_errors
TIRAP	114609	genome.wustl.edu	36	11	125667780	125667780	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	125667780	125667780	G	A	SNP	TIRAP	NM_148910	human	genbank	54_36p	+1	reviewed	missense	c.266	p.C89Y	0.784	superfamily_Toll/Interleukin receptor TIR domain	superfamily_Toll/Interleukin receptor TIR domain	-	no_errors
C20orf112	140688	genome.wustl.edu	36	20	30526170	30526170	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	30526170	30526170	T	C	SNP	C20orf112	NM_080616	human	genbank	54_36p	-1	validated	missense	c.4	p.S2G	1.000	NULL	PatternScan_ILVD_EDD_1	-	no_errors
DRD3	1814	genome.wustl.edu	36	3	115373503	115373503	+	Silent	SNP	G	G	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	115373503	115373503	G	T	SNP	DRD3	NM_000796	human	genbank	54_36p	-1	reviewed	silent	c.27	p.G9	0.083	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
THAP11	57215	genome.wustl.edu	36	16	66434482	66434482	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	66434482	66434482	C	T	SNP	THAP11	NM_020457	human	genbank	54_36p	+1	reviewed	missense	c.524	p.P175L	0.005	NULL	HMMPfam_THAP,HMMSmart_DM3	-	no_errors
NKX2-4	644524	genome.wustl.edu	36	20	21325996	21325996	+	Silent	SNP	G	G	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	21325996	21325996	G	T	SNP	NKX2-4	NM_033176	human	genbank	54_36p	-1	provisional	silent	c.42	p.S14	1.000	NULL	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
AMBRA1	55626	genome.wustl.edu	36	11	46386796	46386796	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	46386796	46386796	C	T	SNP	AMBRA1	NM_017749	human	genbank	54_36p	-1	validated	missense	c.2976	p.M992I	1.000	NULL	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
THBS3	7059	genome.wustl.edu	36	1	153438692	153438692	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	153438692	153438692	G	A	SNP	THBS3	NM_007112	human	genbank	54_36p	-1	reviewed	missense	c.1082	p.A361V	1.000	HMMSmart_SM00179,HMMSmart_SM00181	HMMSmart_SM00210,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_EGF_2,superfamily_TSP type-3 repeat,HMMPfam_TSP_3,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_TSP_C	-	no_errors
IRGC	56269	genome.wustl.edu	36	19	48914768	48914768	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	48914768	48914768	C	T	SNP	IRGC	NM_019612	human	genbank	54_36p	+1	validated	missense	c.218	p.A73V	1.000	superfamily_SSF52540,HMMPfam_IIGP	superfamily_SSF52540,HMMPfam_IIGP	-	no_errors
IDH2	3418	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	88432938	88432938	C	T	SNP	IDH2	NM_002168	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
ACAD10	80724	genome.wustl.edu	36	12	110643917	110643917	+	Nonsense_Mutation	SNP	A	A	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	110643917	110643917	A	T	SNP	ACAD10	ENST00000392636	human	ensembl	54_36p	+1	known	nonsense	c.40	p.K14*	1.000	NULL	superfamily_Kinase_like,HMMPfam_APH,PatternScan_PROTEIN_KINASE_TYR,superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M	-	no_errors
SRSF2	6427	genome.wustl.edu	36	17	72244554	72244554	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	72244554	72244554	G	T	SNP	SFRS2	NM_003016	human	genbank	54_36p	-1	provisional	missense	c.284	p.P95H	0.970	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	-	no_errors
LOC284167	284167	genome.wustl.edu	36	17	57571228	57571228	+	RNA	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	57571228	57571228	C	T	SNP	LOC284167	XR_017049	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
NUP85	79902	genome.wustl.edu	36	17	70713475	70713475	+	Silent	SNP	A	A	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	70713475	70713475	A	T	SNP	NUP85	NM_024844	human	genbank	54_36p	+1	reviewed	silent	c.24	p.P8	0.036	NULL	HMMPfam_Nucleopor_Nup85	-	no_errors
PAICS	10606	genome.wustl.edu	36	4	57009726	57009726	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	57009726	57009726	A	T	SNP	PAICS	NM_001079525	human	genbank	54_36p	+1	reviewed	missense	c.688	p.S230C	1.000	HMMPfam_SAICAR_synt,superfamily_SAICAR synthase-like	HMMPfam_AIRC,superfamily_N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase PurE),HMMPfam_SAICAR_synt,PatternScan_SAICAR_SYNTHETASE_1,PatternScan_SAICAR_SYNTHETASE_2,superfamily_SAICAR synthase-like	-	no_errors
LPCAT1	79888	genome.wustl.edu	36	5	1527072	1527072	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	1527072	1527072	C	A	SNP	LPCAT1	NM_024830	human	genbank	54_36p	-1	validated	missense	c.1179	p.E393D	1.000	superfamily_SSF47473,HMMSmart_EFh	PatternScan_EF_HAND_1,superfamily_SSF69593,HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF47473,HMMSmart_EFh	-	no_errors
FAHD2B	151313	genome.wustl.edu	36	2	97119736	97119736	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	97119736	97119736	G	T	SNP	FAHD2B	NM_199336	human	genbank	54_36p	-1	provisional	missense	c.299	p.A100D	1.000	superfamily_Fumarylacetoacetase_C-rel	superfamily_Fumarylacetoacetase_C-rel,HMMPfam_FAA_hydrolase	-	no_errors
SMCHD1	23347	genome.wustl.edu	36	18	2785976	2785976	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	2785976	2785976	T	A	SNP	SMCHD1	NM_015295	human	genbank	54_36p	+1	validated	missense	c.5749	p.C1917S	0.024	NULL	HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_SMC_hinge,superfamily_Smc hinge domain	-	no_errors
LOC100128974	100128974	genome.wustl.edu	36	15	33378471	33378471	+	RNA	SNP	C	C	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	33378471	33378471	C	A	SNP	LOC100128974	XR_038065	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene
CCDC94	55702	genome.wustl.edu	36	19	4219684	4219684	+	Silent	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	4219684	4219684	C	T	SNP	CCDC94	NM_018074	human	genbank	54_36p	+1	provisional	silent	c.963	p.G321	0.311	NULL	HMMPfam_DUF572	-	no_errors
ENSG00000220356	0	genome.wustl.edu	36	15	60322315	60322315	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	60322315	60322315	C	T	SNP	ENSG00000220356	ENST00000304813	human	ensembl	54_36p	-1	known	missense	c.755	p.G252D	0.978	NULL	NULL	-	no_start_codon
GUCY1B3	2983	genome.wustl.edu	36	4	156934464	156934464	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	156934464	156934464	C	T	SNP	GUCY1B3	NM_000857	human	genbank	54_36p	+1	validated	nonsense	c.502	p.Q168*	1.000	HMMPfam_HNOB,superfamily_H-NOX domain	HMMPfam_HNOB,superfamily_H-NOX domain,HMMPfam_HNOBA,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
ZBTB12	221527	genome.wustl.edu	36	6	31976099	31976099	+	Silent	SNP	A	A	G			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	31976099	31976099	A	G	SNP	ZBTB12	NM_181842	human	genbank	54_36p	-1	validated	silent	c.963	p.P321	0.361	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
EGFLAM	133584	genome.wustl.edu	36	5	38373449	38373449	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	38373449	38373449	A	T	SNP	EGFLAM	NM_152403	human	genbank	54_36p	+1	validated	missense	c.168	p.K56N	0.953	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMSmart_EGF,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,HMMSmart_LamG,HMMPfam_Laminin_G_1,HMMPfam_EGF,PatternScan_EGF_2,HMMPfam_Laminin_G_2	-	no_errors
CANT1	124583	genome.wustl.edu	36	17	74501472	74501472	+	Silent	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	74501472	74501472	G	A	SNP	CANT1	NM_138793	human	genbank	54_36p	-1	provisional	silent	c.961	p.L321	1.000	superfamily_Apyrase,HMMPfam_Apyrase	superfamily_Apyrase,HMMPfam_Apyrase	-	no_errors
CDK13	8621	genome.wustl.edu	36	7	39957960	39957960	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	39957960	39957960	T	C	SNP	CDC2L5	NM_003718	human	genbank	54_36p	+1	reviewed	missense	c.1195	p.Y399H	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ENSG00000210290	0	genome.wustl.edu	36	5	31860482	31860482	+	RNA	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	31860482	31860482	C	T	SNP	ENSG00000210290	ENST00000387555	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.000	-	-	-	pseudogene
NDUFV3	4731	genome.wustl.edu	36	21	43197243	43197243	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	43197243	43197243	G	T	SNP	NDUFV3	NM_021075	human	genbank	54_36p	+1	reviewed	missense	c.1052	p.R351I	0.000	NULL	NULL	-	no_errors
PRG4	10216	genome.wustl.edu	36	1	184540661	184540661	+	Silent	SNP	A	A	G			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	184540661	184540661	A	G	SNP	PRG4	NM_005807	human	genbank	54_36p	+1	reviewed	silent	c.582	p.L194	0.998	NULL	HMMSmart_SM00201,HMMPfam_Somatomedin_B,superfamily_Somatomedin B domain,PatternScan_SMB_1,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120,PatternScan_HEMOPEXIN	-	no_errors
CACNA2D4	93589	genome.wustl.edu	36	12	1866463	1866463	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	1866463	1866463	A	G	SNP	CACNA2D4	NM_172364	human	genbank	54_36p	-1	reviewed	missense	c.815	p.I272T	0.972	NULL	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Cache_1,HMMPfam_VWA_N,superfamily_vWA-like	-	no_errors
GIGYF1	64599	genome.wustl.edu	36	7	100120914	100120914	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	100120914	100120914	G	T	SNP	GIGYF1	NM_022574	human	genbank	54_36p	-1	validated	missense	c.1181	p.P394Q	0.833	NULL	superfamily_GYF,HMMPfam_GYF,HMMSmart_GYF	-	no_errors
LY6G6F	259215	genome.wustl.edu	36	6	31783484	31783484	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	31783484	31783484	T	A	SNP	LY6G6F	NM_001003693	human	genbank	54_36p	+1	provisional	missense	c.323	p.V108E	0.150	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors
RANBP10	57610	genome.wustl.edu	36	16	66396898	66396898	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	66396898	66396898	T	C	SNP	RANBP10	NM_020850	human	genbank	54_36p	-1	provisional	missense	c.281	p.H94R	1.000	NULL	HMMPfam_SPRY,HMMSmart_LisH,HMMSmart_CTLH,HMMSmart_CRA,HMMSmart_SPRY,HMMPfam_RanBPM_CRA	-	no_errors
HSPD1	3329	genome.wustl.edu	36	2	198060140	198060140	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	198060140	198060140	C	T	SNP	HSPD1	NM_002156	human	genbank	54_36p	-1	reviewed	missense	c.1597	p.A533T	1.000	superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1	superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,superfamily_SSF54849,superfamily_SSF52029,PatternScan_CHAPERONINS_CPN60	-	no_errors
UNC5B	219699	genome.wustl.edu	36	10	72721224	72721224	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	72721224	72721224	C	T	SNP	UNC5B	NM_170744	human	genbank	54_36p	+1	validated	missense	c.1324	p.P442S	1.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors
C17orf97	400566	genome.wustl.edu	36	17	263968	263968	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	263968	263968	A	G	SNP	C17orf97	NM_001013672	human	genbank	54_36p	+1	validated	missense	c.1018	p.K340E	0.000	NULL	NULL	-	no_errors
FURIN	5045	genome.wustl.edu	36	15	89222377	89222377	+	Silent	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	89222377	89222377	C	T	SNP	FURIN	NM_002569	human	genbank	54_36p	+1	reviewed	silent	c.679	p.L227	1.000	superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8	superfamily_Prot_inh_propept,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Gal_bind_like,HMMPfam_P_proprotein,HMMSmart_FU,superfamily_Grow_fac_recept	-	no_errors
MRPS16	51021	genome.wustl.edu	36	10	74681759	74681759	+	Silent	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	74681759	74681759	C	T	SNP	MRPS16	NM_016065	human	genbank	54_36p	-1	reviewed	silent	c.42	p.G14	0.465	NULL	PatternScan_RIBOSOMAL_S16,superfamily_Ribosomal_S16,HMMPfam_Ribosomal_S16	-	no_errors
RASGEF1A	221002	genome.wustl.edu	36	10	43016258	43016258	+	Silent	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	43016258	43016258	G	A	SNP	RASGEF1A	NM_145313	human	genbank	54_36p	-1	validated	silent	c.544	p.L182	0.279	superfamily_Ras GEF	HMMSmart_SM00229,superfamily_Ras GEF,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF	-	no_errors
LOC645961	645961	genome.wustl.edu	36	9	89935500	89935500	+	RNA	SNP	T	T	C			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	89935500	89935500	T	C	SNP	LOC645961	XR_040572	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	no_errors
PTPRS	5802	genome.wustl.edu	36	19	5195434	5195434	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	5195434	5195434	T	A	SNP	PTPRS	NM_002850	human	genbank	54_36p	-1	reviewed	missense	c.1048	p.I350F	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
LOC729208	729208	genome.wustl.edu	36	15	56949592	56949592	+	RNA	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	56949592	56949592	G	A	SNP	LOC729208	XR_015915	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
KIF13A	63971	genome.wustl.edu	36	6	17936519	17936519	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	17936519	17936519	T	C	SNP	KIF13A	NM_022113	human	genbank	54_36p	-1	validated	missense	c.1463	p.Q488R	1.000	superfamily_SMAD/FHA domain,HMMPfam_FHA	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMPfam_FHA	-	no_errors
TMEM102	284114	genome.wustl.edu	36	17	7280017	7280017	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7280017	7280017	C	T	SNP	TMEM102	NM_178518	human	genbank	54_36p	+1	provisional	nonsense	c.103	p.Q35*	1.000	NULL	NULL	-	no_errors
CDKN1B	1027	genome.wustl.edu	36	12	12765266	12765266	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	12765266	12765266	A	T	SNP	CDKN1B	ENST00000396340	human	ensembl	54_36p	+1	known	missense	c.476	p.D159V	0.992	NULL	HMMPfam_CDI	-	no_errors
KCNMA1	3778	genome.wustl.edu	36	10	79067158	79067158	+	Silent	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	79067158	79067158	G	A	SNP	KCNMA1	NM_001014797	human	genbank	54_36p	-1	reviewed	silent	c.249	p.G83	0.994	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_BK_channel_a,PatternScan_N6_MTASE	-	no_errors
DIP2C	22982	genome.wustl.edu	36	10	418656	418656	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	418656	418656	T	A	SNP	DIP2C	NM_014974	human	genbank	54_36p	-1	reviewed	missense	c.1922	p.K641I	1.000	superfamily_SSF56801	HMMPfam_AMP-binding,HMMPfam_DMAP_binding,PatternScan_AMP_BINDING,superfamily_SSF56801	-	no_errors
PNPLA3	80339	genome.wustl.edu	36	22	42654361	42654361	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	42654361	42654361	C	T	SNP	PNPLA3	NM_025225	human	genbank	54_36p	+1	reviewed	missense	c.401	p.S134F	0.999	superfamily_FabD/lysophospholipase-like,HMMPfam_Patatin	superfamily_FabD/lysophospholipase-like,HMMPfam_Patatin	-	no_errors
SELENBP1	8991	genome.wustl.edu	36	1	149604290	149604290	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	149604290	149604290	T	A	SNP	SELENBP1	NM_003944	human	genbank	54_36p	-1	reviewed	missense	c.1136	p.K379M	1.000	HMMPfam_SBP56,superfamily_Cyt_cd1_haem_C	HMMPfam_SBP56,superfamily_Cyt_cd1_haem_C	-	no_errors
SMOC2	64094	genome.wustl.edu	36	6	168750815	168750815	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	168750815	168750815	G	A	SNP	SMOC2	NM_022138	human	genbank	54_36p	+1	provisional	missense	c.911	p.R304Q	0.973	NULL	superfamily_Thyroglobulin_1,HMMSmart_KAZAL,HMMPfam_Kazal_1,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_TY,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_SPARC_Ca_bdg	-	no_errors
NEB	4703	genome.wustl.edu	36	2	152091774	152091774	+	Nonsense_Mutation	SNP	A	A	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	152091774	152091774	A	T	SNP	NEB	NM_004543	human	genbank	54_36p	-1	reviewed	nonsense	c.16746	p.Y5582*	1.000	HMMSmart_SM00227,HMMPfam_Nebulin	HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
LAMA1	284217	genome.wustl.edu	36	18	6997234	6997234	+	Silent	SNP	C	C	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	6997234	6997234	C	A	SNP	LAMA1	NM_005559	human	genbank	54_36p	-1	validated	silent	c.4164	p.G1388	0.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00180,superfamily_EGF/Laminin	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMSmart_SM00282,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors
CMYA5	202333	genome.wustl.edu	36	5	79063408	79063408	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	79063408	79063408	G	A	SNP	CMYA5	NM_153610	human	genbank	54_36p	+1	validated	missense	c.3064	p.E1022K	0.262	NULL	HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	-	no_errors
SLC25A20	788	genome.wustl.edu	36	3	48871614	48871614	+	Silent	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	48871614	48871614	C	T	SNP	SLC25A20	NM_000387	human	genbank	54_36p	-1	reviewed	silent	c.633	p.R211	0.998	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors
PEX11B	8799	genome.wustl.edu	36	1	144228634	144228634	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	144228634	144228634	G	A	SNP	PEX11B	NM_003846	human	genbank	54_36p	+1	provisional	missense	c.61	p.A21T	0.996	HMMPfam_PEX11	HMMPfam_PEX11	-	no_errors
SMTN	6525	genome.wustl.edu	36	22	29817415	29817415	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	29817415	29817415	G	A	SNP	SMTN	NM_134270	human	genbank	54_36p	+1	reviewed	missense	c.1406	p.R469H	0.993	NULL	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain	-	no_errors
C1orf31	388753	genome.wustl.edu	36	1	232576150	232576150	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	232576150	232576150	G	A	SNP	C1orf31	NM_001012985	human	genbank	54_36p	+1	predicted	nonsense	c.63	p.W21*	0.002	NULL	superfamily_Cytochrome c oxidase subunit h	-	no_errors
ITM2C	81618	genome.wustl.edu	36	2	231446467	231446467	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	231446467	231446467	G	C	SNP	ITM2C	NM_030926	human	genbank	54_36p	+1	validated	missense	c.212	p.G71A	1.000	NULL	HMMPfam_BRICHOS	-	no_errors
PLCH2	9651	genome.wustl.edu	36	1	2420518	2420518	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	2420518	2420518	G	A	SNP	PLCH2	NM_014638	human	genbank	54_36p	+1	provisional	missense	c.2570	p.S857N	1.000	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00054,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_PH domain-like	-	no_errors
CLDN14	23562	genome.wustl.edu	36	21	36755479	36755479	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	36755479	36755479	C	T	SNP	CLDN14	NM_012130	human	genbank	54_36p	-1	reviewed	missense	c.385	p.G129S	1.000	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	no_errors
LOC442319	442319	genome.wustl.edu	36	7	63167380	63167380	+	RNA	SNP	C	C	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	63167380	63167380	C	A	SNP	LOC442319	XR_016680	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.994	-	-	-	no_errors
AK8	158067	genome.wustl.edu	36	9	134591004	134591004	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	134591004	134591004	C	A	SNP	C9orf98	NM_152572	human	genbank	54_36p	-1	validated	missense	c.1332	p.E444D	0.997	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ADK,superfamily_Microbial and mitochondrial ADK insert ""zinc finger"" domain"	-	no_errors
NGFR	4804	genome.wustl.edu	36	17	44938910	44938910	+	Silent	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	44938910	44938910	G	A	SNP	NGFR	NM_002507	human	genbank	54_36p	+1	reviewed	silent	c.459	p.T153	0.991	superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1	PatternScan_LIPASE_SER,superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,PatternScan_EGF_2,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors
CELSR3	1951	genome.wustl.edu	36	3	48674114	48674114	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	48674114	48674114	T	C	SNP	CELSR3	NM_001407	human	genbank	54_36p	-1	reviewed	missense	c.958	p.N320D	1.000	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMSmart_SM00282,HMMPfam_HRM,HMMSmart_SM00008,HMMSmart_SM00179,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_EGF/Laminin	-	no_errors
SYNGR4	23546	genome.wustl.edu	36	19	53570758	53570758	+	Silent	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	53570758	53570758	C	T	SNP	SYNGR4	NM_012451	human	genbank	54_36p	+1	reviewed	silent	c.408	p.F136	0.848	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
RAB12	201475	genome.wustl.edu	36	18	8599947	8599947	+	Silent	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	8599947	8599947	C	T	SNP	RAB12	NM_001025300	human	genbank	54_36p	+1	validated	silent	c.222	p.T74	1.000	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	-	no_errors
ENSG00000221188	0	genome.wustl.edu	36	15	20816339	20816339	+	RNA	SNP	C	C	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	20816339	20816339	C	A	SNP	ENSG00000221188	ENST00000408261	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.020	-	-	-	no_errors
PTPRU	10076	genome.wustl.edu	36	1	29511754	29511754	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	29511754	29511754	G	A	SNP	PTPRU	NM_005704	human	genbank	54_36p	+1	reviewed	missense	c.3206	p.R1069H	0.998	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404	HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_Immunoglobulin,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
MEGF8	1954	genome.wustl.edu	36	19	47530112	47530112	+	Silent	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	47530112	47530112	G	A	SNP	MEGF8	NM_001410	human	genbank	54_36p	+1	validated	silent	c.465	p.P155	0.000	HMMSmart_EGF	superfamily_CUB,HMMSmart_CUB,HMMPfam_CUB,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_PSI,PatternScan_C_TYPE_LECTIN_1,HMMPfam_PSI,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,PatternScan_EGF_LAM_1,HMMSmart_EGF_Lam	-	no_errors
DMD	1756	genome.wustl.edu	36	X	31764826	31764826	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	31764826	31764826	G	A	SNP	DMD	NM_004006	human	genbank	54_36p	-1	reviewed	missense	c.7130	p.P2377L	1.000	superfamily_Spectrin repeat	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_t-snare proteins,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Prefoldin	-	no_errors
GMIP	51291	genome.wustl.edu	36	19	19609727	19609727	+	Splice_Site	SNP	A	A	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	19609727	19609727	A	T	SNP	GMIP	NM_016573	human	genbank	54_36p	-1	reviewed	splice_site	c.927+2	e10+2	0.997	-	-	-	no_errors
MAMDC4	158056	genome.wustl.edu	36	9	138870774	138870774	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	138870774	138870774	A	T	SNP	MAMDC4	ENST00000392881	human	ensembl	54_36p	+1	known	missense	c.1559	p.D520V	0.006	HMMSmart_SM00137,HMMPfam_MAM	HMMPfam_MAM,HMMSmart_SM00137,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1	-	no_errors
TBC1D10A	83874	genome.wustl.edu	36	22	29021738	29021738	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	29021738	29021738	C	A	SNP	TBC1D10A	NM_031937	human	genbank	54_36p	-1	provisional	missense	c.512	p.R171L	1.000	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
MIR1825	100302183	genome.wustl.edu	36	20	30289288	30289288	+	RNA	SNP	T	T	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	30289288	30289288	T	A	SNP	MIRN1825	ENST00000408740	human	ensembl	54_36p	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
LOC644743	644743	genome.wustl.edu	36	1	44341586	44341598	+	RNA	DEL	GGACTCGGACACC	GGACTCGGACACC	-			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	GGACTCGGACACC	GGACTCGGACACC			GGACTCGGACACC	GGACTCGGACACC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	44341586	44341598	GGACTCGGACACC	-	DEL	LOC644743	XR_016703	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.998:1.000:1.000:0.999:1.000:1.000:1.000:1.000:0.996:0.938:0.870:0.852:0.427	-	-	-	pseudogene
DERL3	91319	genome.wustl.edu	36	22	22509310	22509310	+	Silent	SNP	C	C	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	22509310	22509310	C	A	SNP	DERL3	NM_001002862	human	genbank	54_36p	-1	reviewed	silent	c.555	p.L185	0.999	HMMPfam_DER1	HMMPfam_DER1	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08					-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
SPDEF	25803	genome.wustl.edu	36	6	34616796	34616796	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	34616796	34616796	G	A	SNP	SPDEF	NM_012391	human	genbank	54_36p	-1	provisional	nonsense	c.577	p.Q193*	1.000	superfamily_SAM_homology,HMMPfam_SAM_PNT,HMMSmart_SAM_PNT	superfamily_SAM_homology,HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2	-	no_errors
USO1	8615	genome.wustl.edu	36	4	76952496	76952496	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	76952496	76952496	G	A	SNP	USO1	NM_003715	human	genbank	54_36p	+1	reviewed	missense	c.2743	p.D915N	1.000	superfamily_ARM repeat,HMMPfam_Uso1_p115_C	superfamily_ARM repeat,HMMPfam_Uso1_p115_head,HMMPfam_Uso1_p115_C	-	no_errors
TSHZ3	57616	genome.wustl.edu	36	19	36461818	36461818	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	36461818	36461818	C	T	SNP	TSHZ3	NM_020856	human	genbank	54_36p	-1	validated	missense	c.721	p.D241N	1.000	NULL	PatternScan_HOMEOBOX_1,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
AZI1	22994	genome.wustl.edu	36	17	76797355	76797355	+	Silent	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	76797355	76797355	C	T	SNP	AZI1	NM_014984	human	genbank	54_36p	-1	validated	silent	c.240	p.T80	0.696	NULL	NULL	-	no_errors
ANKIB1	54467	genome.wustl.edu	36	7	91855228	91855228	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	91855228	91855228	G	A	SNP	ANKIB1	NM_019004	human	genbank	54_36p	+1	validated	missense	c.1843	p.E615K	1.000	HMMSmart_RING	PatternScan_ZF_RING_1,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SSF57850,HMMSmart_RING,HMMPfam_IBR,HMMSmart_IBR,HMMPfam_UIM	-	no_errors
TFE3	7030	genome.wustl.edu	36	X	48783671	48783671	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	48783671	48783671	G	A	SNP	TFE3	NM_006521	human	genbank	54_36p	-1	provisional	missense	c.439	p.P147S	0.928	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors
uc003nnt.2	0	genome.wustl.edu	36	6	29868037	29868037	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	29868037	29868037	C	A	SNP	uc003nnt.2	ENST00000399243	human	ensembl	54_36p	+1	known	missense	c.40	p.L14M	0.238	NULL	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog	-	no_errors
CASZ1	54897	genome.wustl.edu	36	1	10622228	10622228	+	Silent	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	10622228	10622228	C	T	SNP	CASZ1	NM_001079843	human	genbank	54_36p	-1	validated	silent	c.4638	p.A1546	0.969	NULL	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
MST1	4485	genome.wustl.edu	36	3	49698094	49698094	+	Silent	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	49698094	49698094	C	T	SNP	MST1	NM_020998	human	genbank	54_36p	-1	validated	silent	c.1284	p.G428	0.965	superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1	HMMPfam_PAN_1,superfamily_SSF57414,HMMSmart_PAN_AP,superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	-	no_errors
PWWP2A	114825	genome.wustl.edu	36	5	159452689	159452689	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	159452689	159452689	C	T	SNP	PWWP2A	NM_052927	human	genbank	54_36p	-1	validated	missense	c.1546	p.A516T	1.000	NULL	NULL	-	no_errors
SCN5A	6331	genome.wustl.edu	36	3	38615544	38615544	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	38615544	38615544	G	A	SNP	SCN5A	NM_001099404	human	genbank	54_36p	-1	reviewed	missense	c.1892	p.T631I	0.996	NULL	HMMPfam_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
ZACN	353174	genome.wustl.edu	36	17	71589577	71589577	+	Silent	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	71589577	71589577	G	A	SNP	ZACN	NM_180990	human	genbank	54_36p	+1	validated	silent	c.897	p.L299	0.999	superfamily_Neurotransmitter-gated ion-channel transmembrane pore	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore	-	no_errors
CLCNKB	1188	genome.wustl.edu	36	1	16254793	16254793	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16254793	16254793	A	T	SNP	CLCNKB	NM_000085	human	genbank	54_36p	+1	validated	missense	c.1882	p.T628S	0.271	HMMPfam_CBS	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMPfam_CBS,HMMSmart_SM00116	-	no_errors
NWD1	284434	genome.wustl.edu	36	19	16721291	16721291	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	16721291	16721291	C	T	SNP	NWD1	NM_001007525	human	genbank	54_36p	+1	validated	missense	c.433	p.R145C	0.005	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
SEC14L2	23541	genome.wustl.edu	36	22	29125693	29125693	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	29125693	29125693	T	A	SNP	SEC14L2	NM_012429	human	genbank	54_36p	+1	reviewed	missense	c.116	p.L39Q	1.000	superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N	superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO,superfamily_SSF101576	-	no_errors
MOBKL2C	148932	genome.wustl.edu	36	1	46851433	46851433	+	Silent	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	46851433	46851433	G	A	SNP	MOBKL2C	NM_145279	human	genbank	54_36p	-1	reviewed	silent	c.304	p.L102	1.000	HMMPfam_Mob1_phocein,superfamily_Mob1/phocein	HMMPfam_Mob1_phocein,superfamily_Mob1/phocein	-	no_errors
GRK1	6011	genome.wustl.edu	36	13	113370228	113370228	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	113370228	113370228	C	T	SNP	GRK1	NM_002929	human	genbank	54_36p	+1	reviewed	nonsense	c.526	p.Q176*	1.000	superfamily_Regulator of G-protein signaling RGS,superfamily_Protein kinase-like (PK-like)	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_stop_codon:bad_bp_length_for_coding_region
SH2D3C	10044	genome.wustl.edu	36	9	129541784	129541784	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	129541784	129541784	T	C	SNP	SH2D3C	NM_170600	human	genbank	54_36p	-1	validated	missense	c.2405	p.Q802R	1.000	HMMSmart_SM00147	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Ras GEF,HMMSmart_SM00147	-	no_errors
CADPS	8618	genome.wustl.edu	36	3	62493667	62493667	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	62493667	62493667	C	T	SNP	CADPS	NM_003716	human	genbank	54_36p	-1	reviewed	missense	c.2210	p.R737Q	1.000	NULL	HMMPfam_C2,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041,superfamily_PH domain-like	-	no_errors
OR7E85P	442105	genome.wustl.edu	36	3	131223910	131223910	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	131223910	131223910	C	T	SNP	OR7E85P	ENST00000321828	human	ensembl	54_36p	-1	known	missense	c.241	p.A81T	0.001	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	PatternScan_SERPIN,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
C20orf132	140699	genome.wustl.edu	36	20	35220845	35220845	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	35220845	35220845	T	A	SNP	C20orf132	NM_152503	human	genbank	54_36p	-1	validated	missense	c.497	p.D166V	0.457	NULL	superfamily_ARM repeat	-	no_errors
DCAF6	55827	genome.wustl.edu	36	1	166227168	166227168	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	166227168	166227168	T	C	SNP	IQWD1	NM_018442	human	genbank	54_36p	+1	validated	missense	c.655	p.Y219H	1.000	superfamily_WD40_like,HMMPfam_WD40,HMMSmart_WD40	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,HMMSmart_IQ	-	no_errors
C14orf102	55051	genome.wustl.edu	36	14	89826500	89826500	+	Silent	SNP	A	A	G			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	89826500	89826500	A	G	SNP	C14orf102	NM_017970	human	genbank	54_36p	-1	validated	silent	c.2047	p.L683	0.002	superfamily_Prenyl_trans	superfamily_Prenyl_trans,HMMPfam_DUF1740	-	no_errors
SF3B2	10992	genome.wustl.edu	36	11	65576759	65576759	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	65576759	65576759	C	T	SNP	SF3B2	NM_006842	human	genbank	54_36p	+1	reviewed	missense	c.173	p.T58I	0.931	HMMPfam_SAP,HMMSmart_SM00513	HMMPfam_SAP,HMMSmart_SM00513,HMMPfam_DUF382,HMMSmart_SM00581,HMMPfam_PSP	-	no_errors
ARIH2	10425	genome.wustl.edu	36	3	48940018	48940018	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	48940018	48940018	A	T	SNP	ARIH2	NM_006321	human	genbank	54_36p	+1	provisional	missense	c.23	p.Q8L	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_IBR,HMMSmart_SM00647,PatternScan_ZF_RING_1	-	no_errors
ZAN	7455	genome.wustl.edu	36	7	100199665	100199665	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	100199665	100199665	C	T	SNP	ZAN	ENST00000349350	human	ensembl	54_36p	+1	known	missense	c.4177	p.H1393Y	0.727	HMMPfam_C8	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMSmart_SM00214,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMPfam_TIL_assoc,HMMPfam_EGF,HMMSmart_SM00181,HMMSmart_SM00215,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_C8,HMMPfam_TIL,superfamily_EGF/Laminin	-	no_errors
ICA1	3382	genome.wustl.edu	36	7	8234829	8234829	+	Splice_Site	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	8234829	8234829	C	T	SNP	ICA1	NM_004968	human	genbank	54_36p	-1	reviewed	splice_site	c.184-1	e3-1	1.000	-	-	-	no_errors
LOC100133263	100133263	genome.wustl.edu	36	3	132583544	132583544	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	132583544	132583544	G	C	SNP	LOC100133263	XM_001717995	human	genbank	54_36p	-1	model	missense	c.481	p.P161A	0.000	NULL	NULL	-	no_errors
DDN	23109	genome.wustl.edu	36	12	47677721	47677721	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	47677721	47677721	G	A	SNP	DDN	NM_015086	human	genbank	54_36p	-1	validated	missense	c.1043	p.P348L	1.000	NULL	NULL	-	no_errors
GPR88	54112	genome.wustl.edu	36	1	100777515	100777515	+	Silent	SNP	C	C	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	100777515	100777515	C	A	SNP	GPR88	NM_022049	human	genbank	54_36p	+1	validated	silent	c.405	p.A135	0.994	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
HDAC6	10013	genome.wustl.edu	36	X	48566449	48566449	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	48566449	48566449	A	G	SNP	HDAC6	NM_006044	human	genbank	54_36p	+1	reviewed	missense	c.2696	p.E899G	0.001	NULL	superfamily_SSF52768,HMMPfam_Hist_deacetyl,HMMSmart_ZnF_UBP,HMMPfam_zf-UBP	-	no_errors
CHAF1A	10036	genome.wustl.edu	36	19	4373768	4373768	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	4373768	4373768	G	A	SNP	CHAF1A	NM_005483	human	genbank	54_36p	+1	validated	missense	c.1223	p.R408H	0.916	NULL	NULL	-	no_errors
JAK3	3718	genome.wustl.edu	36	19	17811445	17811445	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	17811445	17811445	A	T	SNP	JAK3	NM_000215	human	genbank	54_36p	-1	reviewed	missense	c.1282	p.C428S	1.000	HMMSmart_SM00252,superfamily_SH2 domain	PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00252,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMSmart_SM00295,superfamily_SH2 domain	-	no_errors
CLCF1	23529	genome.wustl.edu	36	11	66889598	66889598	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	66889598	66889598	G	A	SNP	CLCF1	NM_013246	human	genbank	54_36p	-1	validated	missense	c.263	p.T88I	0.992	HMMPfam_PRF,superfamily_4_helix_cytokine	HMMPfam_PRF,superfamily_4_helix_cytokine	-	no_errors
NGEF	25791	genome.wustl.edu	36	2	233547809	233547809	+	Silent	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	233547809	233547809	G	A	SNP	NGEF	NM_019850	human	genbank	54_36p	-1	validated	silent	c.36	p.T12	0.000	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
CYP51A1	1595	genome.wustl.edu	36	7	91594860	91594860	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	91594860	91594860	T	A	SNP	CYP51A1	NM_000786	human	genbank	54_36p	-1	reviewed	missense	c.490	p.M164L	1.000	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_TRYPSIN_HIS,PatternScan_CYTOCHROME_P450	-	no_errors
LOC442255	442255	genome.wustl.edu	36	6	122017543	122017543	+	RNA	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	122017543	122017543	C	T	SNP	LOC442255	XR_016618	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.047	-	-	-	pseudogene
SLC47A1	55244	genome.wustl.edu	36	17	19399749	19399749	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	19399749	19399749	C	T	SNP	SLC47A1	NM_018242	human	genbank	54_36p	+1	validated	missense	c.788	p.A263V	1.000	NULL	HMMPfam_MatE	-	no_errors
PDLIM7	9260	genome.wustl.edu	36	5	176843768	176843768	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	176843768	176843768	C	T	SNP	PDLIM7	NM_005451	human	genbank	54_36p	-1	reviewed	nonsense	c.1080	p.W360*	1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	HMMPfam_PDZ,superfamily_PDZ domain-like,HMMSmart_SM00228,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,HMMPfam_LIM,PatternScan_LIM_DOMAIN_1	-	no_errors
DGKZ	8525	genome.wustl.edu	36	11	46345875	46345875	+	Splice_Site	SNP	T	T	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	46345875	46345875	T	A	SNP	DGKZ	NM_001105540	human	genbank	54_36p	+1	reviewed	splice_site	c.933+2	e3+2	1.000	-	-	-	no_errors
DPP6	1804	genome.wustl.edu	36	7	154216768	154216768	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	154216768	154216768	G	A	SNP	DPP6	ENST00000252510	human	ensembl	54_36p	+1	known	missense	c.1183	p.A395T	1.000	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9	-	no_errors
CACNA1D	776	genome.wustl.edu	36	3	53820407	53820407	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	53820407	53820407	A	T	SNP	CACNA1D	NM_000720	human	genbank	54_36p	+1	validated	missense	c.6480	p.E2160D	0.967	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
EPYC	1833	genome.wustl.edu	36	12	89889885	89889885	+	Silent	SNP	T	T	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	89889885	89889885	T	A	SNP	EPYC	NM_004950	human	genbank	54_36p	-1	reviewed	silent	c.525	p.T175	0.989	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors
LOC100134184	100134184	genome.wustl.edu	36	1	4536	4536	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	4536	4536	G	C	SNP	LOC100134184	XM_001717138	human	genbank	54_36p	+1	model	missense	c.917	p.G306A	0.023	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
VIPR1	7433	genome.wustl.edu	36	3	42535775	42535775	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	42535775	42535775	G	A	SNP	VIPR1	NM_004624	human	genbank	54_36p	+1	validated	missense	c.241	p.V81I	1.000	HMMPfam_HRM,HMMSmart_SM00008,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_Hormone receptor domain (HRM Pfam 02793)	HMMPfam_7tm_2,HMMPfam_HRM,HMMSmart_SM00008,PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Family A G protein-coupled receptor-like	-	no_errors
ZNF72	100287084	genome.wustl.edu	36	2	132578076	132578076	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	132578076	132578076	G	A	SNP	ZNF72	ENST00000357025	human	ensembl	54_36p	+1	known	missense	c.170	p.G57D	0.410	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_start_codon:no_stop_codon
POLR1A	25885	genome.wustl.edu	36	2	86119372	86119372	+	Silent	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	86119372	86119372	G	A	SNP	POLR1A	NM_015425	human	genbank	54_36p	-1	validated	silent	c.3996	p.C1332	0.996	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb1_5	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb1_1,HMMSmart_SM00663,HMMPfam_RNA_pol_Rpb1_2,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_4,HMMPfam_RNA_pol_Rpb1_5	-	no_errors
SLC6A19	340024	genome.wustl.edu	36	5	1265467	1265467	+	Silent	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	1265467	1265467	C	T	SNP	SLC6A19	NM_001003841	human	genbank	54_36p	+1	reviewed	silent	c.531	p.Y177	1.000	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1	-	no_errors
JPH3	57338	genome.wustl.edu	36	16	86235854	86235854	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	86235854	86235854	A	T	SNP	JPH3	NM_020655	human	genbank	54_36p	+1	reviewed	missense	c.872	p.E291V	1.000	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN	-	no_errors
MXI1	4601	genome.wustl.edu	36	10	111978019	111978019	+	Silent	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	111978019	111978019	C	T	SNP	MXI1	NM_130439	human	genbank	54_36p	+1	reviewed	silent	c.357	p.S119	1.000	NULL	HMMPfam_HLH,superfamily_HLH_basic,HMMSmart_HLH	-	no_errors
ARL10	285598	genome.wustl.edu	36	5	175731429	175731429	+	Silent	SNP	T	T	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	175731429	175731429	T	A	SNP	ARL10	NM_173664	human	genbank	54_36p	+1	validated	silent	c.660	p.I220	0.365	superfamily_SSF52540,HMMPfam_Arf	superfamily_SSF52540,HMMPfam_Arf	-	no_errors
CBS	875	genome.wustl.edu	36	21	43361751	43361751	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	43361751	43361751	C	G	SNP	CBS	NM_000071	human	genbank	54_36p	-1	reviewed	missense	c.253	p.G85R	1.000	superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes,HMMPfam_PALP	superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes,HMMPfam_PALP,PatternScan_CYS_SYNTHASE,superfamily_CBS-domain,HMMPfam_CBS,HMMSmart_SM00116	-	no_errors
MLST8	64223	genome.wustl.edu	36	16	2198310	2198310	+	Silent	SNP	G	G	A			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	2198310	2198310	G	A	SNP	GBL	NM_022372	human	genbank	54_36p	+1	validated	silent	c.672	p.L224	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
FCHSD1	89848	genome.wustl.edu	36	5	141009287	141009287	+	Silent	SNP	C	C	T			TCGA-AB-2810-03B-01W-0728-08	TCGA-AB-2810-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	141009287	141009287	C	T	SNP	FCHSD1	NM_033449	human	genbank	54_36p	-1	provisional	silent	c.234	p.R78	0.999	HMMSmart_SM00055,HMMPfam_FCH	HMMSmart_SM00055,HMMPfam_FCH,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1,HMMPfam_SH3_2	-	no_errors
