Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
SYNPO	11346	genome.wustl.edu	36	5	150008763	150008763	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	150008763	150008763	A	C	SNP	SYNPO	NM_007286	human	genbank	54_36p	+1	validated	missense	c.733	p.I245L	0.557	NULL	NULL	-	no_errors
ENSG00000201027	0	genome.wustl.edu	36	14	89158251	89158251	+	RNA	SNP	C	C	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	89158251	89158251	C	T	SNP	ENSG00000201027	ENST00000364157	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
CMYA5	202333	genome.wustl.edu	36	5	79061259	79061259	+	Silent	SNP	C	C	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	79061259	79061259	C	T	SNP	CMYA5	NM_153610	human	genbank	54_36p	+1	validated	silent	c.915	p.G305	0.001	NULL	superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_SPRY	-	no_errors
CSRNP2	81566	genome.wustl.edu	36	12	49743968	49743968	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	49743968	49743968	T	C	SNP	CSRNP2	NM_030809	human	genbank	54_36p	-1	provisional	missense	c.1460	p.E487G	0.750	NULL	NULL	-	no_errors
EMG1	10436	genome.wustl.edu	36	12	6954116	6954116	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	6954116	6954116	G	T	SNP	EMG1	ENST00000261406	human	ensembl	54_36p	+1	known	missense	c.409	p.V137F	1.000	HMMPfam_EMG1	HMMPfam_EMG1	-	no_errors
MST1P9	11223	genome.wustl.edu	36	1	16956184	16956184	+	RNA	SNP	G	G	A			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16956184	16956184	G	A	SNP	MSTP9	NR_002729	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
MRPS12	6183	genome.wustl.edu	36	19	44114886	44114886	+	Silent	SNP	C	C	A			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	44114886	44114886	C	A	SNP	MRPS12	NM_021107	human	genbank	54_36p	+1	reviewed	silent	c.123	p.P41	0.024	superfamily_Nucleic acid-binding proteins,HMMPfam_Ribosomal_S12	superfamily_Nucleic acid-binding proteins,HMMPfam_Ribosomal_S12,PatternScan_RIBOSOMAL_S12	-	no_errors
RBM22	55696	genome.wustl.edu	36	5	150060212	150060212	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	150060212	150060212	G	T	SNP	RBM22	NM_018047	human	genbank	54_36p	-1	reviewed	missense	c.95	p.P32Q	0.999	NULL	HMMSmart_SM00356,HMMPfam_zf-CCCH,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
ENSG00000210082	0	genome.wustl.edu	36	MT	2779	2779	+	RNA	SNP	G	G	A			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	2779	2779	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	54_36p	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
PTCH1	5727	genome.wustl.edu	36	9	97260346	97260346	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	97260346	97260346	C	T	SNP	PTCH1	NM_000264	human	genbank	54_36p	-1	reviewed	missense	c.2938	p.G980S	1.000	HMMPfam_Patched	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
TEKT4	150483	genome.wustl.edu	36	2	94906188	94906188	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	94906188	94906188	A	G	SNP	TEKT4	NM_144705	human	genbank	54_36p	+1	provisional	missense	c.1255	p.M419V	1.000	HMMPfam_Tektin	HMMPfam_Tektin	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08					-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
LOC100134187	100134187	genome.wustl.edu	36	4	5232135	5232136	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	5232135	5232136	-	G	INS	LOC100134187	XM_001715505	human	genbank	54_36p	-1	model	frame_shift_ins	c.304_303	p.I101fs	0.034:0.045	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
DOCK4	9732	genome.wustl.edu	36	7	111168880	111168880	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	111168880	111168880	G	T	SNP	DOCK4	NM_014705	human	genbank	54_36p	-1	reviewed	missense	c.4844	p.A1615E	0.994	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors
TKTL2	84076	genome.wustl.edu	36	4	164614217	164614217	+	Silent	SNP	C	C	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	164614217	164614217	C	T	SNP	TKTL2	NM_032136	human	genbank	54_36p	-1	validated	silent	c.120	p.T40	0.992	superfamily_SSF52518,HMMPfam_Transketolase_N	PatternScan_TRANSKETOLASE_1,PatternScan_TRANSKETOLASE_2,superfamily_SSF52518,HMMPfam_Transketolase_N,HMMPfam_Transket_pyr,superfamily_Transketo_C_like,HMMPfam_Transketolase_C	-	no_errors
ProSAPiP1	9762	genome.wustl.edu	36	20	3095744	3095744	+	Silent	SNP	G	G	A			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	3095744	3095744	G	A	SNP	ProSAPiP1	NM_014731	human	genbank	54_36p	-1	validated	silent	c.66	p.A22	0.874	NULL	HMMPfam_Fez1	-	no_errors
LOC730005	730005	genome.wustl.edu	36	22	29264885	29264885	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	29264885	29264885	C	T	SNP	LOC730005	XM_001132040	human	genbank	54_36p	-1	model	missense	c.59	p.R20Q	0.379	superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N	superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO,superfamily_SSF101576	-	no_errors
MT-CO1	0	genome.wustl.edu	36	MT	7273	7273	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	7273	7273	G	A	SNP	MT-CO1	ENST00000361624	human	ensembl	54_36p	+1	known	missense	c.1369	p.G457S	NULL	HMMPfam_COX1,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	no_stop_codon
FLT3	2322	genome.wustl.edu	36	13	27490642	27490642	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27490642	27490642	C	A	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.2503	p.D835Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
USP24	23358	genome.wustl.edu	36	1	55392930	55392930	+	Splice_Site	SNP	A	A	G			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	55392930	55392930	A	G	SNP	USP24	NM_015306	human	genbank	54_36p	-1	validated	splice_site	c.1218+2	e12+2	0.995	-	-	-	no_errors
OR5R1	219479	genome.wustl.edu	36	11	55941700	55941700	+	Silent	SNP	C	C	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	55941700	55941700	C	T	SNP	OR5R1	NM_001004744	human	genbank	54_36p	-1	provisional	silent	c.585	p.K195	0.568	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
DENND5B	160518	genome.wustl.edu	36	12	31504557	31504557	+	Silent	SNP	T	T	C			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	31504557	31504557	T	C	SNP	DENND5B	NM_144973	human	genbank	54_36p	-1	validated	silent	c.930	p.A310	0.614	HMMPfam_DENN,HMMSmart_SM00799	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_RUN,HMMSmart_SM00593,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT	-	no_errors
HLA-B	3106	genome.wustl.edu	36	6	31430968	31430968	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	31430968	31430968	G	A	SNP	HLA-B	NM_005514	human	genbank	54_36p	-1	reviewed	nonsense	c.907	p.Q303*	0.000	NULL	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,HMMPfam_C1-set,superfamily_Immunoglobulin,HMMSmart_SM00407,PatternScan_IG_MHC,HMMPfam_MHC_I_C	-	no_errors
CTSZ	1522	genome.wustl.edu	36	20	57010013	57010013	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	57010013	57010013	C	A	SNP	CTSZ	NM_001336	human	genbank	54_36p	-1	reviewed	missense	c.389	p.G130V	1.000	superfamily_Cysteine proteinases,HMMSmart_SM00645,HMMPfam_Peptidase_C1	superfamily_Cysteine proteinases,HMMSmart_SM00645,HMMPfam_Peptidase_C1,PatternScan_THIOL_PROTEASE_ASN	-	no_errors
OR2Y1	134083	genome.wustl.edu	36	5	180099606	180099606	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	180099606	180099606	C	T	SNP	OR2Y1	NM_001001657	human	genbank	54_36p	-1	provisional	nonsense	c.59	p.W20*	0.001	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
