Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
MT-ND5	0	genome.wustl.edu	36	MT	13116	13116	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	13116	13116	T	C	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	missense	c.779	p.L260P	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
SSTR4	6754	genome.wustl.edu	36	20	22964628	22964628	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	22964628	22964628	G	A	SNP	SSTR4	NM_001052	human	genbank	54_36p	+1	validated	missense	c.508	p.V170M	0.990	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SEC16A	9919	genome.wustl.edu	36	9	138490038	138490038	+	Silent	SNP	G	G	A			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	138490038	138490038	G	A	SNP	SEC16A	NM_014866	human	genbank	54_36p	-1	validated	silent	c.1851	p.H617	0.465	NULL	NULL	-	no_errors
GPR6	2830	genome.wustl.edu	36	6	110407561	110407561	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	110407561	110407561	G	A	SNP	GPR6	NM_005284	human	genbank	54_36p	+1	validated	missense	c.553	p.V185M	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
GALNT7	51809	genome.wustl.edu	36	4	174456015	174456015	+	Silent	SNP	A	A	G			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	174456015	174456015	A	G	SNP	GALNT7	NM_017423	human	genbank	54_36p	+1	reviewed	silent	c.1140	p.E380	1.000	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	-	no_errors
AP3S2	10239	genome.wustl.edu	36	15	88215721	88215721	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	88215721	88215721	T	C	SNP	AP3S2	NM_005829	human	genbank	54_36p	-1	validated	missense	c.335	p.H112R	1.000	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_S	-	no_errors
MT-ND1	0	genome.wustl.edu	36	MT	3434	3434	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	3434	3434	T	C	SNP	MT-ND1	ENST00000361390	human	ensembl	54_36p	+1	known	missense	c.127	p.Y43H	NULL	HMMPfam_NADHdh	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_errors
SSPO	23145	genome.wustl.edu	36	7	149154128	149154128	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	149154128	149154128	C	G	SNP	SSPO	ENST00000378016	human	ensembl	54_36p	+1	known	missense	c.1277	p.T426R	0.004	NULL	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,superfamily_Cysrich_TIL,PatternScan_GLYCO_HORMONE_BETA_1	-	no_errors
CDX4	1046	genome.wustl.edu	36	X	72584050	72584050	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	72584050	72584050	C	A	SNP	CDX4	NM_005193	human	genbank	54_36p	+1	provisional	missense	c.236	p.P79Q	0.973	HMMPfam_Caudal_act	HMMPfam_Caudal_act,PatternScan_HMG_COA_REDUCTASE_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
ENSG00000211459	0	genome.wustl.edu	36	MT	1311	1311	+	RNA	SNP	A	A	G			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	1311	1311	A	G	SNP	ENSG00000211459	ENST00000389680	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
LOC391811	391811	genome.wustl.edu	36	5	92629791	92629791	+	RNA	SNP	G	G	A			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	92629791	92629791	G	A	SNP	LOC391811	XR_016127	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.776	-	-	-	pseudogene
TRNT1	51095	genome.wustl.edu	36	3	3164779	3164779	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	3164779	3164779	A	G	SNP	TRNT1	NM_182916	human	genbank	54_36p	+1	validated	missense	c.1246	p.K416E	1.000	superfamily_Poly A polymerase C-terminal region-like	superfamily_Nucleotidyltransferase,HMMPfam_PolyA_pol,superfamily_Poly A polymerase C-terminal region-like	-	no_errors
FAM115A	9747	genome.wustl.edu	36	7	143204057	143204057	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	143204057	143204057	A	G	SNP	FAM115A	NM_014719	human	genbank	54_36p	-1	predicted	missense	c.578	p.F193S	0.934	NULL	NULL	-	no_errors
CMYA5	202333	genome.wustl.edu	36	5	79070167	79070167	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	79070167	79070167	C	T	SNP	CMYA5	NM_153610	human	genbank	54_36p	+1	validated	missense	c.9823	p.P3275S	0.515	NULL	HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	-	no_errors
MT-ND4	0	genome.wustl.edu	36	MT	10493	10493	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	10493	10493	T	C	SNP	MT-ND4	ENST00000361335	human	ensembl	54_36p	+1	known	missense	c.23	p.I8T	NULL	HMMPfam_Oxidored_q2	HMMPfam_Oxidored_q2	-	no_errors
CYP26A1	1592	genome.wustl.edu	36	10	94825672	94825672	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	94825672	94825672	G	A	SNP	CYP26A1	NM_000783	human	genbank	54_36p	+1	reviewed	missense	c.964	p.V322I	0.887	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
CBFB	865	genome.wustl.edu	36	16	65673671	65673672	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	65673671	65673672	-	A	INS	CBFB	NM_022845	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.454_455	p.F153fs	1.000:1.000	HMMPfam_CBF_beta	HMMPfam_CBF_beta,superfamily_CBF_beta	-	no_errors
EZH2	2146	genome.wustl.edu	36	7	148135695	148135696	+	Frame_Shift_Ins	INS	-	-	ATGCA			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	148135695	148135696	-	ATGCA	INS	EZH2	NM_004456	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.2232_2231	p.E745fs	0.985:1.000	NULL	HMMSmart_SANT,superfamily_SSF82199,HMMPfam_SET,HMMSmart_SET	-	no_errors
ZNF502	91392	genome.wustl.edu	36	3	44738612	44738612	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	44738612	44738612	A	T	SNP	ZNF502	NM_033210	human	genbank	54_36p	+1	validated	missense	c.1299	p.K433N	1.000	superfamily_SSF57667	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
FAM5C	339479	genome.wustl.edu	36	1	188334484	188334484	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	188334484	188334484	G	A	SNP	FAM5C	NM_199051	human	genbank	54_36p	-1	provisional	missense	c.1588	p.R530C	1.000	NULL	HMMPfam_MACPF,HMMSmart_SM00457	-	no_errors
LOC644717	644717	genome.wustl.edu	36	X	134636041	134636041	+	RNA	SNP	G	G	A			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	134636041	134636041	G	A	SNP	LOC644717	XR_037249	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	no_errors
